BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08390.1
Length=3242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1 4879 0.0
Ahg489203 jgi|Araly1|489203|fgenesh2_kg.6__2337__AT5G23430.1 2270 0.0
Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780 483 5e-135
Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683 91.6 3e-17
> Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1
Length=3228
Score = 4879 bits (2642), Expect = 0.0
Identities = 3078/3275 (94%), Gaps = 83/3275 (3%)
Strand=Plus/Plus
Query 4 TGTCTGTGTGTCATTCACATCTCCCTCCTCTCTTCTTCACCATTAGAGGAGAGAAAACAC 63
||||||||||||||||||||||| |||||||||||||| |||||||| | |||
Sbjct 1 TGTCTGTGTGTCATTCACATCTCTCTCCTCTCTTCTTCGCCATTAGA-G-GAG------- 51
Query 64 ACTTTCAAATATATATATAAGTATAACTCATCCAACAACTCCA-TTTTTATCTTCTTCGT 122
|| | | |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 52 -------AA-A-A-ATATAAGT-TAACTCATCCAACAACTCCATTTTTTATCTTCTTCGT 100
Query 123 AAAGGAAACAACGACGTTTACTCCAAGATACTGTTCCTCAATCTGCATTCTTTTCCAATC 182
||||| |||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||
Sbjct 101 AAAGGCAACAACGACGTTTACTGCAAGATACTCTTCTTCATTCTGCATTCTTTTCCAATC 160
Query 183 GA--T------CT-AAATTTGGTTTCTGTGCTGAGATT-GGCTTTCTGGG-TGTTGCTGA 231
|| | || ||| |||||||||| |||| |||| ||| ||||||| | ||| |||
Sbjct 161 GATTTCAACCCCTCAAA-TTGGTTTCTGAGCTGCGATTGGGC-TTCTGGGTTTTTGTTGA 218
Query 232 TTGCAAATTGCTGTTGACAAGCTGAGATCTTAAGGTGCTTTTGCAGTAGCTGAGATTTTT 291
|||| |||||||||| | |||||||||||| ||||||||| || || || |
Sbjct 219 TTGC-AATTGCTGTT----TGTTGAGATCTTAAGTTGCTTTTGC--TA-CT-AG----CT 265
Query 292 CGAGGTTTTTGTCTGTTCGTGAGTAGAAGAATTTGGATGGTCGCCGATGTAAGGGTTTCG 351
| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 266 -G-GATTTTTGTCTGTTCGTGAGTAGAAGAATTTGGATGGTCGCCCATGTAAGGGTTTCG 323
Query 352 TTTCCGCTATGAACACCAAGCGCGCCTACAAGCTCCAGGAATTTGTGGCACATTCTGCTG 411
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TTTCCGCCATGAACACCAAGCGCGCCTACAAGCTCCAGGAATTTGTGGCACATTCTGCTG 383
Query 412 CTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACAGGCGGAGAAG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 384 CTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACAGGCGGGGAAG 443
Query 472 ATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGAGCTTGTATGGGC 531
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATCACAAGGTCAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGAGCTTGTATGGGC 503
Query 532 ACTCTAGCGGGATTGATTCAGTAACATTTGATGCTTCGGAAGGCTTAGTAGCAGCAGGAG 591
||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 504 ACTCTAGTGGGATTGATTCAGTTACGTTTGATGCTTCGGAATGCTTAGTAGCAGCAGGAG 563
Query 592 CTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGGAAGCAAAGGTTGTCAGAACTCTCA 651
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 564 CTGCTAGTGGTACAATTAAACTTTGGGATCTCGAGGAGGCAAAGGTTGTCAGAACTCTCA 623
Query 652 CTGGTCACAGGTCAAACTGCGTATCCGTGAATTTTCACCCTTTTGGTGAGTTTTTTGCTT 711
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTGGTCACAGGTCGAACTGCGTATCCGTGAATTTTCACCCTTTTGGTGAGTTTTTTGCTT 683
Query 712 CTGGTTCTCTAGACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATA 771
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 684 CTGGTTCTCTAGACACTAATCTCAAGATATGGGATATAAGAAAGAAGGGATGCATCCATA 743
Query 772 CTTACAAGGGTCACACTAGAGGGGTCAACGTACTCAGATTCACTCCAGATGGTCGTTGGA 831
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 744 CTTACAAGGGTCACACTCGAGGGGTCAATGTACTCAGATTTACTCCAGATGGTCGTTGGA 803
Query 832 TTGTATCTGGAGGAGAAGATAATGTTGTCAAGGTGTGGGATTTGACTGCTGGAAAACTTT 891
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 804 TTGTATCTGGAGGAGAAGATAATGTTGTCAAGGTTTGGGATTTGACTGCTGGAAAACTTT 863
Query 892 TGCATGAGTTTAAGAGTCATGAAGGGAAAATTCAGAGTCTAGATTTTCATCCCCATGAAT 951
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 864 TGCATGAGTTTAAGAGTCATGAAGGGCAAATTCAGAGTCTAGATTTTCATCCCCATGAAT 923
Query 952 TTCTGCTGGCAACAGGTTCAGCTGATAAGACTGTAAAATTCTGGGACCTTGAAACATTCG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTCTGCTGGCAACAGGTTCAGCTGATAAGACTGTAAAATTCTGGGACCTTGAAACATTCG 983
Query 1012 AGCTTATTGGTTCTGGTGGAACTGAGACTACTGGGGTCCGTTGCCTAACCTTTAATCCAG 1071
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 984 AGCTTATTGGTTCTGGTGGAACTGAGACTACTGGGGTCCGTTGCCTGACCTTTAATCCAG 1043
Query 1072 ATGGAAAGAGTGTGCTTTGTGGATTGCAAGAAAGTCTTAAAATTTTCTCATGGGAGCCAA 1131
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1044 ACGGAAAGAGTGTGCTTTGTGGATTGCAAGAAAGTCTCAAAATTTTCTCATGGGAGCCAA 1103
Query 1132 TAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACG 1191
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TAAGACGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACG 1163
Query 1192 AGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACC 1251
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1164 AGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTTGGCGTTTGGGTTGTAGACC 1223
Query 1252 TCTCGCGCACTGAGCCTATGAGTGGAGGCGCCACTCAGTCAAATTCTCATCCAGAGAAAA 1311
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCTCGCGCCCTGAGCCTATGAGTGGAGGCGCCACTCAGTCAAATTCTCATCCAGAGAAAA 1283
Query 1312 CATCAGGCTCAGGCAGAGATCAAGCAGGTCTGAACGATAACAGCTCAAAGGTTATTCTCG 1371
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1284 CATCGGGCTCAGGCAGAGATCAATCAGGTCTGAACGATAACAGCTCAAAGGTTATTCTCG 1343
Query 1372 GAAAGTTGCCTGGTTCCCAGAAAGTGGATCCTTTATTGAAGGAAACAAAGTCTCTTGGAA 1431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GAAAGTTGTCTGGTTCCCAGAAAGTGGATCCTTTATTGAAGGAAACAAAGTCTCTTGGAA 1403
Query 1432 AATTATCAGTTTCTCAAAACTCGGATCCGTTGCCAAAAGATACAAAGTCTACTGGAAGGT 1491
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1404 AATTATCAGTTTCTCAAAACTCGGATCCTTTGCCAAAAGAAACAAAGTCTACTGGAAGGT 1463
Query 1492 CATCAGT-ATCTCAAAGTTCAGATCCTTTGGTAAAGGAACCAAAGCCTCTCGGAAGGTTT 1550
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 CATCA-TCATCTCAAAGTTCAGATCCTTTGGTAAAGGAACCAAAGCCTCTCGGAAGGTTG 1522
Query 1551 TCAGCTACTCA-CA--GCTCAGACACAGTAAAAGAGTCAAGAACCCTGTCATCCACAGGA 1607
|||| |||||| || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1523 TCAGTTACTCATCATAGCTCAGACGCAGTAAAAGAGTCAAGACCCCTGTCATCCACAGGA 1582
Query 1608 AGTGTATCAGACTCTCCTCACAGGGTTACTTTGACCAGTGCTCCAAAAAGTGCTTCTGGT 1667
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1583 AGTGTATCAGACTCTCCTCACAGGGTTACGTTGACCAGTGCCCCAAAAAGTGCTTCTGGT 1642
Query 1668 ATTTCTACAGTTGTCCCTAATGCTGCAGCCTCAAAGAGAAATTTTGGAAAAGCTAACCCA 1727
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 ATTTCGACAGTTGTCCCCACTGCTGCAGCCTCAAAGAGAAATTTTGGAAAAGCTAACCCA 1702
Query 1728 AAGGCGAATCCTCCAGTAGTCAATAAAGAGGATTATTTTCCAGTAATCGTCCCCAGAACG 1787
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1703 AAGGCGAATCCTCCAGTAGTCAATAAAGAAGATTATTTTCCAGTAATTGTCCCCAGAACG 1762
Query 1788 GAGCCAATAATTGAGCAGGCATCTGAATCCAGAGCAGAACTTGACATTATCGGAAGAACT 1847
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1763 GAGCCAATAATTGAGCAGGCATCTGAATTCAGAGCAGAACTTGACATTATTGGAAGAACT 1822
Query 1848 ATGCCATATTCGCTGCAGTCAAAGGCCGCTGATTCTCGAAGGCTGTCGAGCAGCAGAAAT 1907
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||
Sbjct 1823 ATGCCATATTCGCTGCAGTCAAAGGCGGCTGATTCTCGGAGGCTGTCAAGCAGCAAAAAT 1882
Query 1908 GAGCCAGATCTACCAACCAGTTCGCTTCTTGAAAGGTCTCAGTCTCAACCTATAGAACCA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 GAGCCAGATCTACCAACCAGTTCGCTTCTTGAAAGGTCTCAGTCTCAACCTATAGAACCA 1942
Query 1968 ATCACTTTACAAGATGGGAATACATATCCTAGTGACGAAGGTGGCTCCTGGGATACAGCT 2027
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1943 ATCACTTTACAAGATGGGAATACTTATCCTAGTGACGAAGGTGGCTCATGGGATACAGCT 2002
Query 2028 GAGAGAACAAATAAAGAGAGCAAATGCAGGGTATTTGGAAGGTTTAATTCAAGATCACTG 2087
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 2003 GAGAGAACAAATAAAGATAGCAGATACAGGGTATTTGGAAGGTTTAATTCAAGATCACTG 2062
Query 2088 GTGAGATCACCTCCGAGAAATCACGACGAAAACTCTGACTTGATTAGCTATAATGCAAAT 2147
||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2063 GTGAGATCACCACCGAGAAATCACAACGAAAACTCTGACTTGATTAGGTATAATGCAAAT 2122
Query 2148 AGAGATTCAAGTCCTACTGAAAGCCGAAAAGGAGGAAGACTGCATTCCCTCGTTCTAAAT 2207
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 2123 AGAGATTCAAGTCCTACTGAAAGTCGAAAAGGAGGAAGACTGCATTCCGTCGTTCTAAAT 2182
Query 2208 AGGGAAAGAAGAGGAAGATTTTCTAACTTTGAGGGTCCTGTTTCGAGTTCTTCTGGTGGA 2267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2183 AGGGAAAGAAGAGGAAGATTTTCAAACTTTGAGGGTCCTGTTTCGAGTTCTTCTGGTGGA 2242
Query 2268 AATATGACTGCACCAAACAGTCGCCCTTCCAATATGCTCAAGCAGAGAGGAAATCATGTG 2327
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 2243 AATATGACTGCACCAAACAGTCGCCCTTCCAATATGGTCAAGCACAGAGGAAATTATGTG 2302
Query 2328 CCAGTTGATCAAGGAATCACTTCAGCTAGCGAAGAAGATATAGTTGCAGACATAATGGGG 2387
||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct 2303 CCAGTTGATCAAGGAGTCACTTCTGCTAGCGAAGAAGATATTGTTGTAGACATAATGGGG 2362
Query 2388 CAACACGATCAATTTGTCAGCTCTATGCACTCTCGTTTGGCTAAGTTACAGGTCGTCCGT 2447
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 2363 CAACACGATCAATTTGTCAGCTCCATGCAGTCTCGTTTGGCTAAGTTACAGGTTGTCCGT 2422
Query 2448 AGATATTGGGAAAGAAATGATATTAAAAACTCGATAAGTTCAATAGAGAAGATGGCTGAT 2507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2423 AGATATTGGGAAAGAAATGATATTAAAAACTCGATAAGTTCAATAGAGAAGATGGCTGAT 2482
Query 2508 AATGCTGTAATTGCGGATGTACTACTTATAGTAAACGAGAGACCTGAGATTTTGACACTG 2567
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 AATGCTGTCGTTGCGGATGTACTACTTATAGTAAACGAGAGACCTGAGATTTTGACACTG 2542
Query 2568 GATACCTGTACCTCTCTTCTCCCCCTTTTGACAGCTCTTCTAGGGAGCAACATGGATAGT 2627
||||| |||||||||||||| |||||||||||| | ||||||||||||||||| ||||||
Sbjct 2543 GATACTTGTACCTCTCTTCTTCCCCTTTTGACAACACTTCTAGGGAGCAACATTGATAGT 2602
Query 2628 CATTTGAGTGTCTGCCTTGATTTGCTGCTTAAGCTGGTAAGAATGTATGGGTCACAAATT 2687
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2603 CATTTGAGTGTCTGCCTGGAATTGCTGCTTAAGCTGGTAAGAATGTATGGGTCACAAATT 2662
Query 2688 TACTCGTCGCTTTCCGCTCCCTCATCTGTTGGTGTAGATATTGAGGCTGAGCAAAGGATG 2747
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2663 TACTCGTCGCTTTCGGCTCCATCATCTGTTGGTGTGGATATTGAGGCTGAGCAAAGGATG 2722
Query 2748 GAGCGGTACAGTTGTTGCTTTGTCGAG-TTCGAGAAAATCAAGGCTTGCCTTCCCTCTTT 2806
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2723 GAGCGGTACAGTTGTTGCTTTGTCGAACTT-GAGAAAATCAAGGCTTGCCTTCCCTCTTT 2781
Query 2807 AGCAAGAAGAGGAAATTTGGTGGCCAAGACTCTCCATGAACTCAACTTAACATTTCAAGA 2866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2782 AGCAAGAAGAGGAAATTTGGTGGCCAAGACTCTCCATGAACTCAACTTAACATTTCAAGA 2841
Query 2867 AGTTTCATCGTGAT--------ACTTTTTGGATGTGGATTTGGTTCCAATGTGGAGTTTA 2918
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2842 AGTTTCTTCGTGATGCCTCCGTACTTTTTGGATGTGGATTTGGTTCCAATGTGGAGTTTA 2901
Query 2919 ACAGTACTAAAGCCTAACTCTACCAAGCTAACCAATAGAGTCTATGGAAGACTAACTAAC 2978
||| || ||||| || | | | | ||||||||| ||||||||||||||||||||||||
Sbjct 2902 ACAATAGTAAAG--TA-C-C-A--A-GCTAACCAAAAGAGTCTATGGAAGACTAACTAAC 2953
Query 2979 CCTCGCGTATTGCGTATGGCCACTGCTCGGGTCCGTAACCTTTGCCTTGCGTATG--GA- 3035
||||| || |||||| |||||||||||||||||| | |||||||||||||| | | ||
Sbjct 2954 CCTCGTGTGTTGCGTCTGGCCACTGCTCGGGTCCATTACCTTTGCCTTGCGGAAGCAGAA 3013
Query 3036 T----ACGGTACTGTCTCTCG-TTTCAAGCTAACTTGGTGTGTAAAGAGCCATTTCGGTT 3090
| ||||||||||| |||| ||||||||||||||||||||||||||||||||| || |
Sbjct 3014 TCTCCACGGTACTGTCGCTCGGTTTCAAGCTAACTTGGTGTGTAAAGAGCCATTTTGGCT 3073
Query 3091 GTTGTATTGATCTAGGTTATCATTTCTTCCACACTGTTTAGCTATTTGTTCTTAAGAGCA 3150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3074 GTTGTATTGATCTAGGTTATCATTTCTTCCACACTGTTTAGCTATTTGTTCTTAAGAGCA 3133
Query 3151 CAAAAAAGAAGCCTATAT-TT-AACAAAA-CTGTTTTGTAGAAGATTCAGATCTTGAAGT 3207
||||| |||||||||| | || ||||||| ||||||| ||||| ||||||||||||||||
Sbjct 3134 CAAAAGAGAAGCCTATGTGTTTAACAAAAACTGTTTTCTAGAAAATTCAGATCTTGAAGT 3193
Query 3208 ACTTATACCCAAAATCAGGATTTGTCATTCCCTCT 3242
|||||||||||||||||||||||||||||||||||
Sbjct 3194 ACTTATACCCAAAATCAGGATTTGTCATTCCCTCT 3228
> Ahg489203 jgi|Araly1|489203|fgenesh2_kg.6__2337__AT5G23430.1
Length=3308
Score = 2270 bits (1229), Expect = 0.0
Identities = 2148/2582 (83%), Gaps = 102/2582 (4%)
Strand=Plus/Plus
Query 342 AAGGGTTTCGTTTCCGCT-ATGAACACCAAGCGCGCCTACAAGCTCCAGGAATTTGTGGC 400
|||||||||||| ||| | |||| ||||||||| || || ||||| ||||||||||||||
Sbjct 400 AAGGGTTTCGTTACCG-TCATGACCACCAAGCGAGCTTATAAGCTTCAGGAATTTGTGGC 458
Query 401 ACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTAC 460
||||||||||||||| |||||||||||||| || ||||| || || |||||||| || ||
Sbjct 459 ACATTCTGCTGCTGTCAATTGTCTTAAGATCGGAAGGAAATCTTCTAGGGTTCTGGTAAC 518
Query 461 AGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGAG 520
||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 519 AGGTGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGTAAGCCCAATGCCATTCTGAG 578
Query 521 CTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTTCGGAAGG-CTTAG 579
||||||||||||||| || || ||||||||||| || ||||||||||| | ||| |||||
Sbjct 579 CTTGTATGGGCACTCAAGTGGAATTGATTCAGTGACGTTTGATGCTTCCG-AGGTCTTAG 637
Query 580 TAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGGAAGCAAAGGTTG 639
| ||||||||||||||||||||||| || |||||||||||| | ||||| |||||| |||
Sbjct 638 TTGCAGCAGGAGCTGCTAGTGGTACTATCAAACTTTGGGATTTAGAGGAGGCAAAGATTG 697
Query 640 TCAGAACTCTCACTGGTCACAGGTCAAACTGCGTATCCGTGAATTTTCACCCTTTTGGTG 699
|||| |||||||||||||||||||| || ||| | || ||| ||||||||||||||||||
Sbjct 698 TCAGGACTCTCACTGGTCACAGGTCCAATTGCATCTCAGTGGATTTTCACCCTTTTGGTG 757
Query 700 AGTTTTTTGCTTCTGGTTC-TCTAGACACAAATCTCAAGATATGGGATATAAGAAAGAAG 758
|||||||||| || || || | ||||||||||||| |||||||||||||||||||| |||
Sbjct 758 AGTTTTTTGCGTCAGGCTCAT-TAGACACAAATCTTAAGATATGGGATATAAGAAAAAAG 816
Query 759 GGCTGCATCCATACTTACAAGGGTCACACTAGAGGGGTCAACGTACTCAGATTCACTCCA 818
|||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |||
Sbjct 817 GGCTGCATCCATACTTACAAGGGTCACACTCGAGGAGTCAATGTACTTAGATTCACCCCA 876
Query 819 GATGGTCGTTGGATTGTATCTGGAGGAGAAGATAATGTTGTCAAGGTGTGGGATTTGACT 878
|||||||| ||| ||||||||||||| || || || |||| ||||| |||||||| ||
Sbjct 877 GATGGTCGCTGGGTTGTATCTGGAGGTGAGGACAACATTGTGAAGGTATGGGATTTAACA 936
Query 879 GCTGGAAAACTTTTGCA-TGAGTTTAAGAGTCATGAAGGGAAAATTCAGAGTCTAGATTT 937
||||||||||| || | ||||||||||||||||||||| ||||||| || ||||||||
Sbjct 937 GCTGGAAAACTGCTG-ACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTT 995
Query 938 TCATCCCCATGAATTTCTGCTGGCAACAGGTTCAGCTGATAAGACTGTAAAATTCTGGGA 997
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 996 TCATCCTCATGAATTCCTGCTGGCAACAGGTTCAGCTGATAGGACTGTAAAATTCTGGGA 1055
Query 998 CCTTGAAACATTCGAGCTTATTGGTTCTGGTGGAACTGAGACTACTGGGGTCCGTTGCCT 1057
|| |||||||||||||| ||||||||||||||| |||||||| | |||||||||||| |
Sbjct 1056 TCTGGAAACATTCGAGCTGATTGGTTCTGGTGGACCTGAGACTGCCGGGGTCCGTTGCTT 1115
Query 1058 AACCTTTAATCCAGATGGAAAGAGTGTGCTTTGTGGATTGCAAGAAAGTCTTAAAATTTT 1117
| |||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1116 GAGCTTTAATCCAGATGGAAAGACTGTGCTTTGTGGATTGCAAGAAAGTCTCAAGATTTT 1175
Query 1118 CTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAA-ACTTGTCGG 1176
||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1176 CTCGTGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGA-TTGTCAG 1234
Query 1177 ATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCG 1236
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1235 ATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAAAGTTGTGTAGGCG 1294
Query 1237 TTTGGGTTGTAGACCTCTCGCGCACTGAGCCTATG-AGTGGA-GGCGCCACT-CAG--TC 1291
| ||||||||||| |||||||| |||||||| ||| | ||| || | |||| || ||
Sbjct 1295 TGTGGGTTGTAGATCTCTCGCGTACTGAGCC-ATGTA-TGGCTGGAGACACTGCACAATC 1352
Query 1292 AAATTCTCATCCAGAGAAAACATCAGGCTCAGGCAGAGATCAAGCAGGTCTGAACGATAA 1351
|||| |||||||||||||| ||| ||||||| ||||||| || || ||| || || ||
Sbjct 1353 AAATGGTCATCCAGAGAAAAGATCTTGCTCAGGAAGAGATCCAGTAGTTCTCAATGAAAA 1412
Query 1352 CAGCTCAAAGGTTA-TTCTCGGAAAGTTGCCTGGTTCCCAGAAAGTGGATCCTTTATTGA 1410
| ||||||| | ||||||| ||| |||| | ||||||||| || |||||||||||||
Sbjct 1413 TAACTCAAAGAC-AGTTCTCGGGAAGCTGCCCGTTTCCCAGAATGTAGATCCTTTATTGA 1471
Query 1411 AGGAAACAAAGTCTCTTGGAAAATTATCAGTTTCTCAAAACTCGGATCCGTT-GCCAAAA 1469
||||||||||||||||||||| |||||| |||||||| ||||| ||||| || | |||||
Sbjct 1472 AGGAAACAAAGTCTCTTGGAAGATTATCTGTTTCTCAGAACTCTGATCC-TTCGACAAAA 1530
Query 1470 GATACAAAGTCTACTGGAAGGTCATCAGTATCTCAAAGTTCAGAT-CCTTTGGTAAAGGA 1528
|| |||||||| | ||||||||||||| ||| |||| ||||||| ||| | | |||||
Sbjct 1531 GAAACAAAGTCCATTGGAAGGTCATCAACATCCCAAAATTCAGATTCCTC-GATGAAGGA 1589
Query 1529 ACCAAAGCCTCTCGGAAGGTTTTCAGCTACTCACAGCTCAGACACAG-TAAAAGAGTCAA 1587
| ||||||||||||| ||||| |||| | |||| | |||||| |||| |||||||
Sbjct 1590 ATCAAAGCCTCTCGGGAGGTTGTCAGTTTCTCAAAATTCAGACGTTTCTAAA-GAGTCAA 1648
Query 1588 GAACCCTGTCATCCACAGGAAGTGTATCAGACTCTCCTCACAGGGTTACTTTGACCA--G 1645
| || ||||||||||||||||| || ||| | |||| || ||||| | || ||||| |
Sbjct 1649 GGACTTTGTCATCCACAGGAAGTTTACCAGGCACTCCACATAGGGTCAGTTCGACCAATG 1708
Query 1646 TGCTCCAAAAAGTG-CTTCTGGTATTTCTACAGTTGTCCCTAATGCTGCAGCCTCAAAGA 1704
|| || |||| | |||| ||| |||| |||| ||| ||||||||||| | ||| ||
Sbjct 1709 TG-TC-AAAA-GCCACTTCAGGTGTTTCAACAGCCGTCTCTAATGCTGCAACGTCACGGA 1765
Query 1705 GAAATTTTG-GAAAAGCTAACCCAAAGGCGAATCCTCCAGTAGTCAATAAAG-AG--GAT 1760
| |||||| |||| ||||||||||||||||||||| || |||||| | || |||
Sbjct 1766 GGAATTTTATGAAA-GCTAACCCAAAGGCGAATCCT---GT---CAATAAGGCAGCAGAT 1818
Query 1761 TATT-TTCCAGTAATCGTCCCCAGAACGGAGCCAATAATTGAGCAGGC-ATCTGAATCCA 1818
| || |||| || || ||||||||| | || || | ||| |||||||| | |||||||||
Sbjct 1819 T-TTGTTCCGGTGATTGTCCCCAGAGCAGACCCTAGAATAGAGCAGGCTA-CTGAATCCA 1876
Query 1819 GAGCAGAACTTGACATTATCGGAAGAACTATGCCATATTCGCTGCAGTCAAAGGCCGCTG 1878
|||||||||||||||| || | |||||| ||||| |||||| ||||| | ||| ||
Sbjct 1877 GAGCAGAACTTGACATAATTGCAAGAACCATGCCTTATTCGTTGCAGGC---GGC---TG 1930
Query 1879 ATTCTCGAAGGCTGTCG-AGCAGCAGAAATGAGCCAGATCTACCAACCAG-TTC-GCTTC 1935
||||||||||| | | |||||||||||| | || ||||| |||| | ||| | ||
Sbjct 1931 ATTCTCGAAGG-TCACCTAGCAGCAGAAATAACCCTGATCTGCCAAAT-GCTTCTGGTT- 1987
Query 1936 TTGAAAGGTCTCAGTCTCAACCTA-TAGAACCAA-TCACTTTACAAGATGGGAATACA-T 1992
|||||| |||| |||||| || | | ||||||| | | | ||| ||||||| |||| |
Sbjct 1988 TTGAAATGTCTGAGTCTCGGCC-AGTTGAACCAAATAA-TATACTAGATGGGGGTACACT 2045
Query 1993 ATCCTAGTGACGAA-GG-TGGC-TCCTGGGATACAGCTGAGAGAA-CAAATAAAGAGAGC 2048
|||| ||| ||| || |||| | | ||| | || ||||| ||| || ||| ||
Sbjct 2046 -TCCTGGTG--GAAAGGGTGGCATGCGGGG-TGCAACTGAGCGAAGCAT-TAATGATTTT 2100
Query 2049 AAATGCAGG-GTATTTGGAAGGTTTAATTCAAGATCACTGG-TGAGATCACCTCCGA-GA 2105
| || || | | || ||| ||| ||||||||| |||| || || | |||||||| | ||
Sbjct 2101 AGATACAAGAG-ATATGGCAGGAGTAATTCAAGGTCAC-GGATGGGGTCACCTCC-ACGA 2157
Query 2106 AATCACGACGAAAACTCTGACTTGATTAGCTATAA-TGCAAATAGAGATTCAAGTCCTAC 2164
|| ||||| ||||||| ||||||| | ||| | || | |||||||||| |||| || ||
Sbjct 2158 AACCACGATGAAAACTATGACTTGGTAAGCCACAAAT-CAAATAGAGACCCAAGCCCCAC 2216
Query 2165 TGAAAGCC-GAAAAGGAGGAAGACTGCATTCCCTCGTTC-TAAATAGGGAAAGAAGAGGA 2222
|||||| | |||| ||||||||| | || || ||||| | |||||||||| |||||||||
Sbjct 2217 TGAAAGTCAGAAA-GGAGGAAGATTCCAGTCGCTCGT-CATAAATAGGGAGAGAAGAGGA 2274
Query 2223 AGATTTTCTAACTTT-GAGGGTCCTGTTTCGAGTTCTTCTGGTGGAAATATGACTGCACC 2281
|| ||||| || ||| |||||||||||||| | || ||| |||||||| || |||| ||
Sbjct 2275 AGGTTTTCAAA-TTTCGAGGGTCCTGTTTCAAATTTTTCAAGTGGAAATGTGCCTGCTCC 2333
Query 2282 AAACAGTC-GCCCTTCCAATATGCTCAAGCAGAGAGGAAATCATGTGCCAGTTGATCAAG 2340
||||| || ||||||| |||||| ||||||||||||| || ||| ||||||| || ||||
Sbjct 2334 AAACA-TCCGCCCTTCAAATATGTTCAAGCAGAGAGGGAACCATATGCCAGTAGAACAAG 2392
Query 2341 -GAATC-ACTTCAGCTAGC-GAAGAAGATATAGTTGCAGACATAATGGGGCAA-CACGAT 2396
|| || | ||| || | |||||| |||| |||| ||||||||||||| || ||||||
Sbjct 2393 AGA-TCGA-TTCTCCTT-CTGAAGAAAATATTGTTGAAGACATAATGGGG-AAGCACGAT 2448
Query 2397 CAATTTGTCAGCTCTATGCACTCTCGTTTGGCTAAGTTACAGGTCGTCCGTAGATATTGG 2456
|||||| ||||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 2449 CAATTTTTCAGCTCTATGCAGTCTCGTTTGGCTAAGTTACAGGTAGTTCGCAGATATTGG 2508
Query 2457 GAAAGAAATGATATTAAAAACTCGATAAGTTCAATAGAGAAGATGGCTGATAATGCTGTA 2516
||||| |||||| | |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2509 GAAAGGAATGATGTAAAAAACTCGATATGTTCGATAGAGAAGATGGCTGATAATGCTGTT 2568
Query 2517 ATTGCGGATGTACTACTTATAGTAAACGAGAGACCTGAGATTTTGACACTGGATACCTGT 2576
| ||| |||||| | |||| ||| ||||||| |||||||||||||||||||| |||
Sbjct 2569 ACTGCAGATGTATTGGGTATAATAACCGAGAGAAATGAGATTTTGACACTGGATAATTGT 2628
Query 2577 ACCTCTCTTCTCCCCCTTTTGACAGCTCTTCTAGGGAGCAACATGGAT-AGTCATTTGAG 2635
||||| ||||| |||||| | ||||||||||||||||||||||||||| || ||||||||
Sbjct 2629 ACCTCCCTTCTTCCCCTTCTAACAGCTCTTCTAGGGAGCAACATGGATCAG-CATTTGAG 2687
Query 2636 TGTCTGCCTTGATTTGCTGCTTAAGCTGGTAAGAATGTATGGGTCACAAATTTACTCGTC 2695
|| | ||| |||||| |||| ||||| || ||| |||||||||||| ||||||||| ||
Sbjct 2688 CGTTTCCCTGGATTTGTTGCTGAAGCTTGTCAGACTGTATGGGTCACCAATTTACTCATC 2747
Query 2696 GCTTTCCGCTCCCTCATCTGTTGGTGTAGATATTGAGGCTGAGCAAAGGATGGAGCGGTA 2755
|| || ||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 2748 ACTGTCAGCTCCAGCATCTGTTGGTGTAGATATCGAGGCTGAGCAAAGGATCGAGCGCTA 2807
Query 2756 CAGTTGTTGCTTTGTCGAGTTCGAGAAAATCAAGGCTTGCCTTCCCTCTTTAGCAAGAAG 2815
||| |||||||||| ||| | |||||| |||| | ||||||||||| ||||||||||
Sbjct 2808 CAGCCGTTGCTTTGTAGAGCTAGAGAAAGTCAAAACCTGCCTTCCCTCCCTAGCAAGAAG 2867
Query 2816 AGGAAATTTGGTGGCCAAGACTCTCCAT-GAACTCAA-CTTAACATTTCAAGAAGTTTCA 2873
|||| ||||||||||||| || | | | |||||||| || | ||||||| |||||||||
Sbjct 2868 AGGAGGTTTGGTGGCCAAGTCTGTGC-TCGAACTCAATCT-AGCATTTCAGGAAGTTTCA 2925
Query 2874 TC 2875
||
Sbjct 2926 TC 2927
> Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780
Length=2427
Score = 483 bits (261), Expect = 5e-135
Identities = 293/309 (95%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 388 AGGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCA 447
||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||| |
Sbjct 443 AGGAATTTGTGGCACCTTCTGCCGCTGTTAAGTGTCTTAATATTGGGAGGAAGTCCTCGA 502
Query 448 GGGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCA 507
|||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 503 GGGTTCTCGTAACTGGCGGGGAAGATCACAAGGTCAATCTATGGGCTATTGGTAAGCCCA 562
Query 508 ACGCCATCCTGAGCTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTT 567
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 563 ACGCCATCCTGAGCTTGTATGGGCACTCGAGTGGGATTGATTCAGTAACGTTTGATGCTT 622
Query 568 CGGAAGGCTTAGTAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGG 627
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CGGAAGGCTTAGTAGCAGCTGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGG 682
Query 628 AAGCAAAGGTTGTCAGAACTCTCACTGGTCACAGGTCAAACTGCGTATCCGTGAATTTTC 687
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 683 AGGCAAAGGTTGTCAGAACTCTCACTGGTCACAGGTCGAACTGCGTATCTGTGAATTTTC 742
Query 688 ACCCTTTTG 696
|||||||||
Sbjct 743 ACCCTTTTG 751
Score = 381 bits (206), Expect = 2e-104
Identities = 234/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 389 GGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAG 448
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 57 GGAATTTGTGGCACATTCCGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCAAA 116
Query 449 GGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAA 508
||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 117 GGTTCTCGTAACAGGCGGGGAAGATCACAAGGTCAATCTGTGGGCTATTGGTAAGCCCAA 176
Query 509 CGCCATCCTGAGCTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTTC 568
||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 177 CGCCATCCTGAGCTTGTATGGGCACTCGAGTGGGGTTGATTCAGTAACGTTTGATGCTTC 236
Query 569 GGAAGGCTTAGTAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGGA 628
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 GGAAGGCTTACTAGCAGCAGGAGCTGCTAGTGGTACAACTAAACTTTGGGATCTGGAGGA 296
Query 629 AGCAAAGG 636
|||||||
Sbjct 297 GGCAAAGG 304
Score = 230 bits (124), Expect = 7e-59
Identities = 136/142 (96%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 723 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 363
Query 783 CACACTAGAGGGGTCAACGTACTCAGATTCACTCCAGATGGTCGTTGGATTGTATCTGGA 842
|||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 364 CACACTCGAGGGGTCAATGTACTCAGATTCACTCAAGATGGTCGTTGGACTGTATCTGGA 423
Query 843 GGAGAAGATAATGTTGTCAAGG 864
||| ||||| ||||||||||||
Sbjct 424 GGAAAAGATTATGTTGTCAAGG 445
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 360 ATGAACACCAAGCGCGCCTACAAGCTCC 387
||||||||||||||||||||||||||||
Sbjct 1 ATGAACACCAAGCGCGCCTACAAGCTCC 28
> Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683
Length=864
Score = 91.6 bits (49), Expect = 3e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 3194 TCAGATCTTGAAGTACTTATACCCAAAATCAGGATTTGTCATTCCCTCT 3242
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TCAGATCTTGAAGTACTTATACCCAAAATCAGGATTTGTCATTCCCTCT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122355097195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5