BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08391.1 Length=484 Score E Sequences producing significant alignments: (Bits) Value Ahg487673 jgi|Araly1|487673|fgenesh2_kg.6__807__AT5G08391.1 387 5e-107 > Ahg487673 jgi|Araly1|487673|fgenesh2_kg.6__807__AT5G08391.1 Length=362 Score = 387 bits (209), Expect = 5e-107 Identities = 238/252 (94%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 27 CATCATCCTTATCATCAAGAAAGAGAGAAAATGTCGGATTGGGGACCGGTGCTAGTTACG 86 ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1 CATCATCATCATCATCAAGAAAGAGAGAAAATGTCAGATTGGGGACCGGTGCTAGTGACG 60 Query 87 GTGATACTCTTCGTGATGCTTACGCCAGGGCTTCTGTTTCAGTTGCCGGGACGACAAAAG 146 |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||| Sbjct 61 GTGATACTCTTCGTGATGCTCACGCCGGGGCTTCTGTTTCAGTTGCCGGGCCGAC-AAAG 119 Query 147 -TACGTTGAGTTTGGTAATTTTCAGACAAGCGCTGTCTCCGTTATCGTCCATTCTCTTCT 205 || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 120 ATATGTTGAATTTGGTAATTTTCAGACAAGTGCTGTCTCCGTTATCGTCCATTCTCTTCT 179 Query 206 CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA 239 Query 266 ATTCATTAGTTT 277 ||| |||| ||| Sbjct 240 ATTAATTATTTT 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17551570940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5