BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08391.1
Length=484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487673 jgi|Araly1|487673|fgenesh2_kg.6__807__AT5G08391.1 387 5e-107
> Ahg487673 jgi|Araly1|487673|fgenesh2_kg.6__807__AT5G08391.1
Length=362
Score = 387 bits (209), Expect = 5e-107
Identities = 238/252 (94%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 27 CATCATCCTTATCATCAAGAAAGAGAGAAAATGTCGGATTGGGGACCGGTGCTAGTTACG 86
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 CATCATCATCATCATCAAGAAAGAGAGAAAATGTCAGATTGGGGACCGGTGCTAGTGACG 60
Query 87 GTGATACTCTTCGTGATGCTTACGCCAGGGCTTCTGTTTCAGTTGCCGGGACGACAAAAG 146
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||
Sbjct 61 GTGATACTCTTCGTGATGCTCACGCCGGGGCTTCTGTTTCAGTTGCCGGGCCGAC-AAAG 119
Query 147 -TACGTTGAGTTTGGTAATTTTCAGACAAGCGCTGTCTCCGTTATCGTCCATTCTCTTCT 205
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 ATATGTTGAATTTGGTAATTTTCAGACAAGTGCTGTCTCCGTTATCGTCCATTCTCTTCT 179
Query 206 CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTACTTCTCCCTTGTTTGCGTCTTCCTTCTCGCACTCAAGATTCACATCTACATCGGCTA 239
Query 266 ATTCATTAGTTT 277
||| |||| |||
Sbjct 240 ATTAATTATTTT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17551570940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5