BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08400.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683 1044 0.0
Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1 558 4e-158
> Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683
Length=864
Score = 1044 bits (565), Expect = 0.0
Identities = 595/610 (98%), Gaps = 0/610 (0%)
Strand=Plus/Plus
Query 421 GGTACTGGAAAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGTACTGGAGAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT 314
Query 481 AGGAAATCCTGAGCTCATGagaaagaaggttgaagaaagagttaggaagaagggaaaaga 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGGAAATCCTAAGCTCATGAGAAAGAAGGTTGAAGAAAGAGTTAGGAAGAAGGGAAAAGA 374
Query 541 tttccagaaacagaagaCTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGATTTCAA 600
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 TTTCCAGAAGCAGAAGACTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGACTTCAA 434
Query 601 TCCTGTAGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCAGATCGAGATGTTGA 660
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 435 TCCTGTTGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCTGATCGAGATGTTGA 494
Query 661 TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGATTGGGCGCTTTCAATAC 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 495 TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGGTTGGGCGCTTTCAATAC 554
Query 721 ATCCAACTTGCAGCTAGCAAACACATCCCTAGAATATGATCCTCTCTATGACGCAGAGAA 780
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 555 ATCCAACTTGCAGCTGGCAAATTCATCTCTAGAATATGATCCTCTCTATGACGCAGAGAA 614
Query 781 GGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA 674
Query 841 CTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT 734
Query 901 CAACTGTTTGACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGTGG 960
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 CAACTGTTTAACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGAGG 794
Query 961 TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT 854
Query 1021 CAAGATCTGA 1030
||||||||||
Sbjct 855 CAAGATCTGA 864
Score = 390 bits (211), Expect = 2e-107
Identities = 244/260 (94%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 68 ATGAATCTCAATTTCGCTTTCTCCCCATTCCTTGTCTCTCAGAGACAACCATTCTCTTCC 127
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1 ATGAATCTCAATTTCGCTTTCTCCCCATTCCATGTCTCTCAGACACAACCATTCTCTCCC 60
Query 128 CACAAGCGTAATCTTCACACTCTCGTTGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT 187
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CACAAGCGTAATCTTCACACTCTCGTCGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT 120
Query 188 GAAGATAACGGCGGAATTTCGGCGGCAAATAAAGGTTCTGGGACTACAGCGAGAGGAAGG 247
||| ||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||
Sbjct 121 GAAAATAACGGCGGAATGTCGGCGGCGAATAAAGGTTCTGGTACTACGGCAAGAGGAAGG 180
Query 248 AGATTACTCAAGGTTAGAGAAGAGAAGCGAAAACGCGACTACGATCGTCTTCACGATTAC 307
||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||
Sbjct 181 AGATTACTCAAGGTTAGAGAAGACAAGAGGAAACGCGACTACGATCGTCTGCACGATTAT 240
Query 308 CCATCTTGGGCCAAG-TACT 326
||||||||||||||| ||||
Sbjct 241 CCATCTTGGGCCAAGGTACT 260
> Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1
Length=3228
Score = 558 bits (302), Expect = 4e-158
Identities = 406/451 (90%), Gaps = 27/451 (6%)
Strand=Plus/Minus
Query 982 AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGAATCTTCTACAA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 3228 AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGAATTTTCTAGAA 3169
Query 1042 AACAGTTTT-GTTAAATA--TAGGCTTCTTTTTTGTGCTCTTAAGAACAAATAGCTAAAC 1098
||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 3168 AACAGTTTTTGTTAAACACATAGGCTTCTCTTTTGTGCTCTTAAGAACAAATAGCTAAAC 3109
Query 1099 AGTGTGGAAGAAATGATAACCTAGATCAATACAACAACCGAAATGGCTCTTTACACACCA 1158
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 3108 AGTGTGGAAGAAATGATAACCTAGATCAATACAACAGCCAAAATGGCTCTTTACACACCA 3049
Query 1159 AGTTAGCTTGAAAC-GAGAGACAGTACCGT--A--T-C--CATACGCAAGGCAAAGGTTA 1210
|||||||||||||| ||| ||||||||||| | | | | | |||||||||||||| |
Sbjct 3048 AGTTAGCTTGAAACCGAGCGACAGTACCGTGGAGATTCTGCTTCCGCAAGGCAAAGGTAA 2989
Query 1211 CGGACCCGAGCAGTGGCCATACGCAATACGCGAGGGTTAGTTAGTCTTCCATAGACTCTA 1270
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 2988 TGGACCCGAGCAGTGGCCAGACGCAACACACGAGGGTTAGTTAGTCTTCCATAGACTCTT 2929
Query 1271 TTGGTTAGCTTGGTAGAGTTAGGCTTTAGTACTGTTAAACTCCACATTGGAACCAAATCC 1330
||||||||||||||| ||| || | | ||||||||||||||||||||||||||||
Sbjct 2928 TTGGTTAGCTTGGTACT-TTA--CT--A-T--TGTTAAACTCCACATTGGAACCAAATCC 2877
Query 1331 ACATCCAAAAAGTA--------TCACGATGAAACTTCTTGAAATGTTAAGTTGAGTTCAT 1382
|||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2876 ACATCCAAAAAGTACGGAGGCATCACGAAGAAACTTCTTGAAATGTTAAGTTGAGTTCAT 2817
Query 1383 GGAGAGTCTTGGCCACCAAATTTCCTCTTCT 1413
|||||||||||||||||||||||||||||||
Sbjct 2816 GGAGAGTCTTGGCCACCAAATTTCCTCTTCT 2786
Score = 182 bits (98), Expect = 1e-44
Identities = 110/116 (95%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1682 CCAACCTTTGCTCAGCCTCAATATCTACACCAACAGATGAGGGAGCGGAAAGCGACGAGT 1741
||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2723 CCATCCTTTGCTCAGCCTCAATATCCACACCAACAGATGATGGAGCCGAAAGCGACGAGT 2664
Query 1742 AAATTTGTGACCCATACATTCTTACCAGCTTAAGCAGCAAATCAAGGCAGACACTC 1797
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2663 AAATTTGTGACCCATACATTCTTACCAGCTTAAGCAGCAATTCCAGGCAGACACTC 2608
Score = 115 bits (62), Expect = 1e-24
Identities = 69/72 (96%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 1528 CTTGCTAAAGAGGGAAGGCAAGCCTTGATTTTCTCGAACT-CGACAAAGCAACAACTGTA 1586
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 2787 CTTGCTAAAGAGGGAAGGCAAGCCTTGATTTTCTC-AAGTTCGACAAAGCAACAACTGTA 2729
Query 1587 CCGCTCCATCCT 1598
||||||||||||
Sbjct 2728 CCGCTCCATCCT 2717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5