BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08400.1 Length=1797 Score E Sequences producing significant alignments: (Bits) Value Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683 1044 0.0 Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1 558 4e-158 > Ahg350090 jgi|Araly1|350090|fgenesh1_pg.C_scaffold_6000683 Length=864 Score = 1044 bits (565), Expect = 0.0 Identities = 595/610 (98%), Gaps = 0/610 (0%) Strand=Plus/Plus Query 421 GGTACTGGAAAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT 480 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 GGTACTGGAGAGTGCGTGTAAAGATGATGAAGAGCTTCGAGCTGTTCTTGGTGATAGCAT 314 Query 481 AGGAAATCCTGAGCTCATGagaaagaaggttgaagaaagagttaggaagaagggaaaaga 540 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 AGGAAATCCTAAGCTCATGAGAAAGAAGGTTGAAGAAAGAGTTAGGAAGAAGGGAAAAGA 374 Query 541 tttccagaaacagaagaCTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGATTTCAA 600 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 375 TTTCCAGAAGCAGAAGACTGGTTCTGTGCTTTCTTTCAAAGTTAACTTCAGAGACTTCAA 434 Query 601 TCCTGTAGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCAGATCGAGATGTTGA 660 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 435 TCCTGTTGATTCCTTCATATGGTTTGAGCTCTATGGAACGCCTTCTGATCGAGATGTTGA 494 Query 661 TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGATTGGGCGCTTTCAATAC 720 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 495 TCTCATTGGAAGTGTTATACAGGCATGGTATGTTATGGGGCGGTTGGGCGCTTTCAATAC 554 Query 721 ATCCAACTTGCAGCTAGCAAACACATCCCTAGAATATGATCCTCTCTATGACGCAGAGAA 780 ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct 555 ATCCAACTTGCAGCTGGCAAATTCATCTCTAGAATATGATCCTCTCTATGACGCAGAGAA 614 Query 781 GGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA 840 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 615 AGGCTTCAAAGTGATGCCTTCATCGTTTCATGACATTAGCGATGTCGAATTTCAAGACAA 674 Query 841 CTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 TTGGGGTCGTGTGTGGGTTGATCTTGGTACTTCCGATATCTTCGCCCTTGATGTGCTTCT 734 Query 901 CAACTGTTTGACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGTGG 960 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 735 CAACTGTTTAACAGTTATGAGTTCAGAGTACTTGGGCATTCAACAAGTAGTATTTGGAGG 794 Query 961 TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 TAAACGAATGGGAGATTGGGAAGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTT 854 Query 1021 CAAGATCTGA 1030 |||||||||| Sbjct 855 CAAGATCTGA 864 Score = 390 bits (211), Expect = 2e-107 Identities = 244/260 (94%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 68 ATGAATCTCAATTTCGCTTTCTCCCCATTCCTTGTCTCTCAGAGACAACCATTCTCTTCC 127 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || Sbjct 1 ATGAATCTCAATTTCGCTTTCTCCCCATTCCATGTCTCTCAGACACAACCATTCTCTCCC 60 Query 128 CACAAGCGTAATCTTCACACTCTCGTTGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT 187 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 CACAAGCGTAATCTTCACACTCTCGTCGCTGTTTCTGCTAATTCCGACAACCTCGCCGGT 120 Query 188 GAAGATAACGGCGGAATTTCGGCGGCAAATAAAGGTTCTGGGACTACAGCGAGAGGAAGG 247 ||| ||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||| Sbjct 121 GAAAATAACGGCGGAATGTCGGCGGCGAATAAAGGTTCTGGTACTACGGCAAGAGGAAGG 180 Query 248 AGATTACTCAAGGTTAGAGAAGAGAAGCGAAAACGCGACTACGATCGTCTTCACGATTAC 307 ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||| Sbjct 181 AGATTACTCAAGGTTAGAGAAGACAAGAGGAAACGCGACTACGATCGTCTGCACGATTAT 240 Query 308 CCATCTTGGGCCAAG-TACT 326 ||||||||||||||| |||| Sbjct 241 CCATCTTGGGCCAAGGTACT 260 > Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1 Length=3228 Score = 558 bits (302), Expect = 4e-158 Identities = 406/451 (90%), Gaps = 27/451 (6%) Strand=Plus/Minus Query 982 AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGAATCTTCTACAA 1041 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 3228 AGAGGGAATGACAAATCCTGATTTTGGGTATAAGTACTTCAAGATCTGAATTTTCTAGAA 3169 Query 1042 AACAGTTTT-GTTAAATA--TAGGCTTCTTTTTTGTGCTCTTAAGAACAAATAGCTAAAC 1098 ||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| Sbjct 3168 AACAGTTTTTGTTAAACACATAGGCTTCTCTTTTGTGCTCTTAAGAACAAATAGCTAAAC 3109 Query 1099 AGTGTGGAAGAAATGATAACCTAGATCAATACAACAACCGAAATGGCTCTTTACACACCA 1158 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 3108 AGTGTGGAAGAAATGATAACCTAGATCAATACAACAGCCAAAATGGCTCTTTACACACCA 3049 Query 1159 AGTTAGCTTGAAAC-GAGAGACAGTACCGT--A--T-C--CATACGCAAGGCAAAGGTTA 1210 |||||||||||||| ||| ||||||||||| | | | | | |||||||||||||| | Sbjct 3048 AGTTAGCTTGAAACCGAGCGACAGTACCGTGGAGATTCTGCTTCCGCAAGGCAAAGGTAA 2989 Query 1211 CGGACCCGAGCAGTGGCCATACGCAATACGCGAGGGTTAGTTAGTCTTCCATAGACTCTA 1270 |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct 2988 TGGACCCGAGCAGTGGCCAGACGCAACACACGAGGGTTAGTTAGTCTTCCATAGACTCTT 2929 Query 1271 TTGGTTAGCTTGGTAGAGTTAGGCTTTAGTACTGTTAAACTCCACATTGGAACCAAATCC 1330 ||||||||||||||| ||| || | | |||||||||||||||||||||||||||| Sbjct 2928 TTGGTTAGCTTGGTACT-TTA--CT--A-T--TGTTAAACTCCACATTGGAACCAAATCC 2877 Query 1331 ACATCCAAAAAGTA--------TCACGATGAAACTTCTTGAAATGTTAAGTTGAGTTCAT 1382 |||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 2876 ACATCCAAAAAGTACGGAGGCATCACGAAGAAACTTCTTGAAATGTTAAGTTGAGTTCAT 2817 Query 1383 GGAGAGTCTTGGCCACCAAATTTCCTCTTCT 1413 ||||||||||||||||||||||||||||||| Sbjct 2816 GGAGAGTCTTGGCCACCAAATTTCCTCTTCT 2786 Score = 182 bits (98), Expect = 1e-44 Identities = 110/116 (95%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1682 CCAACCTTTGCTCAGCCTCAATATCTACACCAACAGATGAGGGAGCGGAAAGCGACGAGT 1741 ||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 2723 CCATCCTTTGCTCAGCCTCAATATCCACACCAACAGATGATGGAGCCGAAAGCGACGAGT 2664 Query 1742 AAATTTGTGACCCATACATTCTTACCAGCTTAAGCAGCAAATCAAGGCAGACACTC 1797 |||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 2663 AAATTTGTGACCCATACATTCTTACCAGCTTAAGCAGCAATTCCAGGCAGACACTC 2608 Score = 115 bits (62), Expect = 1e-24 Identities = 69/72 (96%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 1528 CTTGCTAAAGAGGGAAGGCAAGCCTTGATTTTCTCGAACT-CGACAAAGCAACAACTGTA 1586 ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 2787 CTTGCTAAAGAGGGAAGGCAAGCCTTGATTTTCTC-AAGTTCGACAAAGCAACAACTGTA 2729 Query 1587 CCGCTCCATCCT 1598 |||||||||||| Sbjct 2728 CCGCTCCATCCT 2717 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67457823895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5