BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08410.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325438 jgi|Araly1|325438|fgenesh1_pm.C_scaffold_6000658 889 0.0
> Ahg325438 jgi|Araly1|325438|fgenesh1_pm.C_scaffold_6000658
Length=1434
Score = 889 bits (481), Expect = 0.0
Identities = 532/557 (96%), Gaps = 2/557 (0%)
Strand=Plus/Plus
Query 55 GATGACTAACAGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 114
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GATGACTAACGGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 938
Query 115 TCAAGACTATCTAG-TTGCTGCTTCTCTTAGTGGACGCAAATCGATCAACTCTTCATCTT 173
|||||||| ||||| || |||||||||||| |||||| |||||||||| |||||||||||
Sbjct 939 TCAAGACTGTCTAGCTT-CTGCTTCTCTTAATGGACGTAAATCGATCACCTCTTCATCTT 997
Query 174 CGTCCATTTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGCCTTCT 233
| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 998 CTTCCATCTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGGCTTCT 1057
Query 234 CAATCTCGCGGAAGAATCCAAAATCGACGATTCGTTGCGATATTGCTGTGAAATCGGCGG 293
|||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| |
Sbjct 1058 CAATCTCGCGAAAGAATCCAAGATCGACAATTCGTTGTGATATTGCTGTGAAATCGGCAG 1117
Query 294 CTTCTGTAGACGCGGACGCTGATCTATCGTCATCTACGTCGTTGGAGACGGAGGAAGACG 353
||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 1118 CTTCTGTCGACGCGGACGCTGATCTTTCTTCATCTACGTCATTGGAGACTGAGGAAGACG 1177
Query 354 AGAAAGCGAAGGAGAAGATTGGAGCTAGGGTTAGGGTTACGGTTCCGTTGAAAGTTTACC 413
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1178 AGAAGGCGAAGGAGAAGATTGGGGCTAGGGTTAGGGTTACGGTGCCGTTGAAAGTTTACC 1237
Query 414 ATGTGGTTCGTGTACCGGAGGTTGAATTGATGGGAATGGAAGGTTTTATCAAAGATTACG 473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1238 ATGTGGTTCGTGTACCGGAGGTTGAGTTGATGGGAATGGAAGGTTTTATCAAAGATTACG 1297
Query 474 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAGTTCGTGA 533
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1298 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAATTCGTGA 1357
Query 534 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 1417
Query 594 AGTTAATTGATCCGTGA 610
|||||||||||||||||
Sbjct 1418 AGTTAATTGATCCGTGA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5