BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08420.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487679 jgi|Araly1|487679|fgenesh2_kg.6__813__AT5G08420.1 2019 0.0
> Ahg487679 jgi|Araly1|487679|fgenesh2_kg.6__813__AT5G08420.1
Length=1337
Score = 2019 bits (1093), Expect = 0.0
Identities = 1238/1306 (95%), Gaps = 18/1306 (1%)
Strand=Plus/Plus
Query 85 GGTCAAACATCATAAACCTTTTGCCGCCGTCACTAATAGGAATTAACTGATCTCGTCAAT 144
|||||||||||||||| | ||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct 44 GGTCAAACATCATAAAGC-TTTGCCGCCGTCACTTATACGAATTAACTGACCTCTTCAAT 102
Query 145 GGCGGAGGTGGAGGAGATTGCGCACGAGGAGCAGAATATCGAGAAGAGGGAGAAGAAGAA 204
||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 103 GGCGGAGGTAGAGGAGCTTGAGCACGAGGAGCAGAATATCGAGAAGAGGGTGAAGAAGAA 162
Query 205 AGGTAAACACGAGAAGCCGAAGCCATGGGATGATGACCCAAACATCGACCGTTGGACAAT 264
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 163 AGGTAAACACGACAAGCCGAAACCATGGGACGATGACCCAAACATCGACCGTTGGACAAT 222
Query 265 CGAGAAGTTTGATCCGGCATGGAACCCCACTGGTATGACTGAAACCAGCACGTTCTCAAC 324
||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 223 CGAGAAGTTTGATCCGGCATGGAACCCCACTGGTATGTTTGAAACCAGCTCCTTCTCCAC 282
Query 325 ACTCTTTCCTCAATACAGAGAGAAGTATCTTCAGGAGTGTTGGCCTAGAGTTGAATCTGC 384
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 283 TCTCTTTCCTCAATACAGAGAGAAGTATCTTCAGGAGTCTTGGCCAAGAGTTGAATCTGC 342
Query 385 TCTTAAGGAGTACGGTGTCGCCTGCAAGCTCAACTTGGTTGAAGGTTCTATGACTGTTTC 444
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TCTCAAGGAATACGGTGTCGCCTGCAAGCTCAACTTGGTTGAAGGTTCTATGACTGTTTG 402
Query 445 GACGACGAGGAAGACAAGAGATCCATACATCATTGTCAAAGCTAGGGATTTGATTAAGCT 504
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GACGACAAGGAAGACAAGAGATCCATACATCATTGTCAAAGCTAGGGATTTGATTAAGCT 462
Query 505 TCTTTCCAGAAGTGTCCCTGCTCCTCAGGCAATTAAGATTCTCGAAGATGAGGTGCAATG 564
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 463 TCTTTCCAGAAGTGTCCCTGCTCCTCAGGCTATTAAGATTCTCGAAGATGAGATGCAATG 522
Query 565 TGATATCATCAAGATCGGTAACTTGGTTAGAAATAAGGAAAGATTTGTTAAAAGAAGGCA 624
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 TGATATCATCAAGATCGGTAACTTGGTTAGGAATAAGGAAAGATTTGTTAAAAGAAGGCA 582
Query 625 GCGGCTTGTGGGTCCTAATTCTTCTACCTTGAAGGCGCTGGAAATATTAACCAACTGTTA 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GCGGCTTGTGGGTCCTAATTCTTCTACCTTGAAGGCGCTGGAAATATTAACCAACTGTTA 642
Query 685 CATTCTAGTTCAGGGAAGTACTGTAGCCGCTATGGGTCCATTTAAAGGTCTCAAACAGCT 744
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 643 CATTCTAGTTCAGGGAAGTACTGTAGCCGCAATGGGTCCATTTAAAGGTCTCAAACAGCT 702
Query 745 CAGAAGGATTGTGGAAGACTGCGTACAGAATATAATGCATCCTGTATACCATATAAAGAC 804
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 703 CAGAAGGATTGTGGAAGACTGCGTACAGAATAAAATGCATCCTGTATACCATATAAAGAC 762
Query 805 TCTCATGATGAAAAAAGAACTGGAGAAGGATCCAGCTCTTGCAAATGAAAGCTGGGATAG 864
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 763 TCTCATGATGAAAAAGGAACTGGAGAAGGATCCAGCTCTTGCAAACGAAAGCTGGGATAG 822
Query 865 GTTTCTTCCCACATTCAGGAAGAAAAATGTTAAGCAAAAGAAACCCAAAAGCAAGGAGAA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GTTTCTTCCCACATTCAGGAAGAAAAATGTTAAGCAAAAGAAACCCAAAAGCAAGGAGAA 882
Query 925 GAAGCCATACACACCTTTCCCACCTCCTCAACCACCTAGCAAGATTGATATGCAGTTGGA 984
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 883 GAAGCCATACACACCTTTCCCACCCCCTCAACCACCTAGCAAGATTGATATGCAGTTGGA 942
Query 985 GTCTGGAGAATACTTCATGAGTGATaaaaagaagtcagagaaaaaatggcaggagaagca 1044
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 943 GTCTGGAGAATACTTTATGAGTGACAAAAAGAAGTCAGAGAAAAAATGGCAGGAGAAGCA 1002
Query 1045 agagaaacagtcagagaagagcacagagaacaaaagaaagagagaTGCCTCATTCCTCCC 1104
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1003 AGAGAAACAGACAGAGAAGAGTACTGAGAACAAAAGAAAGAGAGATGCCTCATTCCTCCC 1062
Query 1105 ACCTGAGGAGCCTATGAACAACAATAGCAACGCAAACAAATCAGAGGATGGAAAGAATGA 1164
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1063 ACCTGAGGAGCCTATGAACAACAATAGCAAGGCAAACAATTCAGAGGATGGAAAGAATGA 1122
Query 1165 TATAACCGAGTTAACA-AATTCCTTGAAGAGCAAGACGAAGGAGTTGAAAAAGCAGAAAA 1223
||||||||| ||||| ||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1123 CATAACCGAGCTAACACAAT-CCTTGAAGAGCAAGACAAAGGAGTTTAAAAAGCAGAAAA 1181
Query 1224 AGACACACGAGAGAGTGAATGCGGAGGAGTATATTGCTGGTCCATCTTCTTCTGCTGATA 1283
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1182 AGACACACGAGAGAGTGAATGCAGAGGAGTATATTGCTGGTCCATCTTCTA-T--TGATA 1238
Query 1284 AATCTTCCAAG-A-A-GTCCAAAAAGATTAGAGATTAATTCT-AAATCCTGttttttttt 1339
|| || ||||| | | ||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 1239 AACCTGCCAAGGAGAAGTCCAAAAAGAATAGAGATTAATTCTTAAA-CCTGTTTTTTTTT 1297
Query 1340 aaaaaaaaaaaaGAGAGAAAAGATTGAAACTTATCTATGCTCAAAA 1385
||||| | || | ||||||||||||||||||| |||||||||
Sbjct 1298 AAAAAGA-----GA-A-AAAAGATTGAAACTTATCTTTGCTCAAAA 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5