BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08430.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487680 jgi|Araly1|487680|fgenesh2_kg.6__814__AT5G08430.1 1687 0.0
> Ahg487680 jgi|Araly1|487680|fgenesh2_kg.6__814__AT5G08430.1
Length=2002
Score = 1687 bits (913), Expect = 0.0
Identities = 1072/1145 (94%), Gaps = 26/1145 (2%)
Strand=Plus/Plus
Query 2 TGTCGGGTTCTTTGTGCTTTCCGTCAATTTCTTCTCGGAGAGCGACTAATTTCGACGATT 61
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TGTCGGGTTTTTTGTGCTTTCCGTCAATTTCTTTTCGGAGAGCGACTAATTTCGACGATT 60
Query 62 AGCTCGGTGGCTGTTTTCTTTCAATTCGTGCATTTCGTCAGATTAACAGG-TTTT-AAGG 119
|||||| ||| |||||||| ||||||||||||||||||| ||||||||| |||| ||||
Sbjct 61 AGCTCGTTGG-GGTTTTCTTCCAATTCGTGCATTTCGTCAAATTAACAGGTTTTTGAAGG 119
Query 120 GAAATTTCTTCCACGCGACGACtttttttt-GT--TTGG---TTCAAGAATCAGTAA-AT 172
|||||||||||||||||||||||||||||| || ||| | |||||||||||| |
Sbjct 120 GAAATTTCTTCCACGCGACGACTTTTTTTTGGTAACTGGAAAAT-AAGAATCAGTAACA- 177
Query 173 GTA----TTCGCCTTTCATTGCAGTAGTAGGGTTTATAGTTTCTTAAGCTAGAGGTGTGA 228
||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 GTACGGGTTCGCATTCCACTGCAGTAGTAGGGTTTATAGTTTCTTAAGCTAGAGTTGTGA 237
Query 229 GtttttttCTTCTCCTTAGGTTTTGAGATATAAATTTTGGGTTGTAATGGGGGATATAAC 288
||||| || || | |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 238 GTTTTGTT-TT-T-CTTAGGTTTTGAGAGAGAAATTTTGGGTTGTAATGGGGGATATAAC 294
Query 289 TTGGGTTGAAGAGGGTAA---TGGCTCTGCGACTTCTTCGAGGAAAAGGAAAGCGAGACC 345
||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 295 TTGGGTTGAGGAGGGTAATGGTGGCTCTGCGATTTCTTCGAGGAAAAGGAAGGCGAGACC 354
Query 346 TAAACGATTCGAATTTGTAGGATGGGGTTCGAGACAACTCATTGAGTTTCTAC-ACTCTC 404
||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 355 TAAACGATTCGAATTTGTAGGATGGGGTTCGAGACAACTCATTGAGTTTCT-CAAATCAC 413
Query 405 TTGGTAAAGATACTTCAGAAATGATCTCTCGTTATGATGTTAGTGACACTATTGCTAAGT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 TTGGTAAAGATACTTCAGAAATGATCTCTCGTTATGATGTTAGTGACACTATTGCTAGGT 473
Query 465 ATATTTCAAAGGAAGGTCTTTTAGATCCTTCCAATAAGAAGAAAGTTGTGTGCGACAAAA 524
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 ATATTGCAAAGGAAGGTCTTTTAGATCCTTCCAATAAGAAGAAAGTTGTGTGCGACCAAA 533
Query 525 GATTGGTTT-TGCTTTTCGGGACTAGGACGATTTTCAGAATGAAAGTCTATGATCTCCTT 583
||||| ||| | |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 534 GATTGCTTTCT-CTTTTCGGGAGTCGGACGATTTTCAGAATGAAAGTCTATGATCTCCTT 592
Query 584 GAAAAGCATTACAAAGAGAATCAGGATGATTCTGACTTTGATTTTCTCTACGAGGATGAG 643
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAAAGCATTATAAAGAGAACCAGGATGATTCTGACTTTGATTTTCTCTACGAGGATGAG 652
Query 644 CCGCAGATTATTTGTCATTCGGAGAAGATAGCTAAACGGACAAGTAAGGTTGTTAAGAAA 703
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCGCAGATCATTTCTCATTCGGAGAAGATAGCTAAACGGACAAGTAAGGTTGTTAAGAAA 712
Query 704 CCTAGAGGTACTTTTGCTGCTATTGTGAGTGATAATATCAAGCTTCTCTACTTGAGAAAG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CCTAGAGGTACTTTTGCTGCTATTGTGAGTGATAATATCAAGCTTCTCTACTTGAGAAAG 772
Query 764 AGCTTAGTCCAGGAACTGCTCAAGTCTCCTGATACCTTTGAGGGTAAAATGTTGGGAAGT 823
||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||
Sbjct 773 AGCTTAGTCCAGGAATTGGTGAAGTCTCCTGATACCTTTGAGAGTAAAATGTTGGGAAGT 832
Query 824 TTTGTGAGGATCAAGTCTGACCCTAATGATTATCTTCAGAAGTACCCTTATCAGCTTGTT 883
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTGTGAGAATCAAGTCCGACCCTAATGATTATCTTCAGAAGTACCCTTATCAGCTTGTT 892
Query 884 CAGGTGACAGGCGTGAAGAAGGAACATGGGACTGATGATTTTCTTCTTCAGGTTACAAAT 943
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 893 CAGGTGACAGGCGTGAAGAAGGAACCTGGGACTGATGATTTTCTTCTTCAGGTTACAAAT 952
Query 944 TATGTGAAAGATGTTTCTATATCTGTGCTATCTGATGATAATTTCTCCCAGGAGGAATGT 1003
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 953 TATGTGAAAGATGTTTCTATATCTGTGCTGTCTGATGATAATTTCTCCCAGGAGGAATGT 1012
Query 1004 GAAGATTTACATCAGAGAATAAAGAACGGACTTCTTAAGAAGCCTACTATTGTGGAGATG 1063
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1013 GAAGATTTACATCAGCGAATAAAGAACGGACTTCTTAAGAAGCCCACAATTGTGGAGATG 1072
Query 1064 GAAGAAAAAGCTAAAAAATTACATAAAGATCAAACAAAACACTGGCTTGGAAGAGAAATT 1123
||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1073 GAAGAAAAAGCTAGAAGTTTACATGAAGATCAGACAAAACACTGGCTTGGAAGAGAAATT 1132
Query 1124 GAATT 1128
| |||
Sbjct 1133 GTATT 1137
Score = 1177 bits (637), Expect = 0.0
Identities = 803/879 (91%), Gaps = 28/879 (3%)
Strand=Plus/Plus
Query 1177 GCTGTCCGAGTACCTAGATAAGAGGGAGCTTCTTCAAAATCCAGATGAACAGGCCAGGCT 1236
||||||||||||||| || ||| |||||||||||||||||||||| ||||||||| | ||
Sbjct 1150 GCTGTCCGAGTACCTGGAGAAGCGGGAGCTTCTTCAAAATCCAGAAGAACAGGCCCGTCT 1209
Query 1237 ACTCCGCGAAGTTCCAGAAGTTATTGGAGAGGA-ACTTGTACAAAACCCTGAAGTTTCGT 1295
||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||
Sbjct 1210 ACTCCGCGAAGTTCCAGAAGTTATTGGAGAGGATA-TTGTACCAAACCCTGAAGTGTCGT 1268
Query 1296 CCCCTGAGGCTCATAAAAGTGACAACGAGCAACGATTGAGTGAATCTCCATTATCGTGCA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CCCCTGAGGCTCATAAAAGTGACAACGAGCAACGATTGAGTGAATCTCCATTATCGTGCA 1328
Query 1356 TCCATGAAACCCCAGAAGCTCGCAACCTCTTTGGTGGAGAAGATCAACAATTTAATAACG 1415
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1329 TCCAAGAAACCCCAGAAGTTCGCAACCTCTTTGGTGGAGAAGATCAACAATTTAATGATG 1388
Query 1416 GCTATGTGATGTCAAACCCCATCACAACTCCGGGAATCACATCTTGTGCTACGGAAATTA 1475
| ||| |||| |||||||||| |||||||| ||||||||| |||| |||||| | ||||
Sbjct 1389 GGTATCTGATATCAAACCCCAGCACAACTCTGGGAATCACGTCTTATGCTAC-G--ATTA 1445
Query 1476 ACAAGGGATTGCCAACATGGATTGCTTCTGCAGGTGCTGAGTATCTTCATGTAGATGTAG 1535
|| ||||||| ||| ||||||||||||||||||||| ||| ||||||| || ||||||||
Sbjct 1446 ACGAGGGATTACCAGCATGGATTGCTTCTGCAGGTGATGAATATCTTCGTGGAGATGTAG 1505
Query 1536 AGCAGCCAGCAAATGGCATCATTGGAGGAGAGACGCCGACTGAAGAGTCTAAAGTTTCTC 1595
||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct 1506 AGCAGCCAGCAAATGGCATCATTGGAGGAGAGACG-C--C------GTCTAAAGTTTCCC 1556
Query 1596 AGCTTCAGTCAAGTATACCAGTAAATAATGTCGACAACGGATCTCAAGTTCAACCAAATC 1655
||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||
Sbjct 1557 AGCTTCAGTCAAGTATACCTGTAATTAATGTCAACAATGGATCTCAAGTTCAACCAAATC 1616
Query 1656 CATCAGAAGTAATCGAACTGAGCGATGATGATGAAGATGACAACGGTGATGGAGAGACCC 1715
||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1617 CATCAGAGGTAATTGAACTGAGCGATGATGATGAAGATGACAACGATGATGGAGAGACCC 1676
Query 1716 TGGACCCTAAAGTTGAAGACGTCCGGGTTCTGTCTTATGATAAAGAGAAGTTAAACTGGT 1775
||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 1677 TGGACCCTAAAGTTGAAGATGTCCAGGTTCTGTCTTATGATAAAGAAAAGTTAAACTGGT 1736
Query 1776 TATACAAAGATCCTCAGGGTCTTGTACAGGGACCATTCTCTCTCACACAACTCAAAGCTT 1835
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1737 TATACAAAGATCCTCAGGGTCTTGTACAGGGACCATTCTCGCTCACACAACTCAAAGCTT 1796
Query 1836 GGAGCGACGCAGAGTATTTCACCAAACAGTTCAGGGTTTGGATGACAGGAGAAAGCATGG 1895
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1797 GGAGAGACGCAGAGTACTTCACCAAACACTTCAGGGTTTGGATGACAGGAGAAAGCATGG 1856
Query 1896 AATCCGCAGTTTTACTAACCGATGTTCTTCGTCTAGTGTAACTAATGCAATACTCTGAAG 1955
||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1857 AATCCGCAGTTTTACTAACCGATGTTCTTCGTCG-GTCTAACTAATGCAGTA-----AA- 1909
Query 1956 ACTATTAGATTCAGTCAAAAGTGGTTTCAGTAATCTGTTATCGTCTGTCATTATCTTCAA 2015
||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||||
Sbjct 1910 -CTATTAGATTCAGTCAAAAGTGGTTTCAGTATTCTGTT-T-GTCA-T--TTATCTTCAA 1963
Query 2016 ATTGCAGTAGG-TTTTGCTCCTCCTTTTCAGTAAACAGC 2053
|||||||||| |||||||||||||||| ||||||||||
Sbjct 1964 GTTGCAGTAGGGTTTTGCTCCTCCTTTTAAGTAAACAGC 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5