BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08440.2

Length=2884
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325441 jgi|Araly1|325441|fgenesh1_pm.C_scaffold_6000661          1941    0.0   
  Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1         651    0.0   
  Ahg940327 jgi|Araly1|940327|scaffold_600871.1                        560    2e-158


> Ahg325441 jgi|Araly1|325441|fgenesh1_pm.C_scaffold_6000661
Length=2175

 Score = 1941 bits (1051),  Expect = 0.0
 Identities = 1147/1191 (96%), Gaps = 16/1191 (1%)
 Strand=Plus/Plus

Query  1497  AGGTTCTATTTAGGCATCTGCAGGAGAAGCTCAATGTTACTGAGGTATGATATGCGGACA  1556
             ||||||||||||||||||||||||||||||||||||||||       ||  |    ||||
Sbjct  1001  AGGTTCTATTTAGGCATCTGCAGGAGAAGCTCAATGTTAC-------TG--A----GACA  1047

Query  1557  AAGCTAAAGGAGACAGAGTACCAATTAGCACCTTGGCAGTCAGATGTAAACCACTCAAAT  1616
             ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct  1048  AAGCTAAAGGAGACAGAATACCAATTAGCACCTTGGCAGTCAGATGCAAACCACTCAATT  1107

Query  1617  GCTTCACCTTTGTCACCATATCAGCCTGTTGGTGTGGGTTTGAGATATTCAACAGATTCA  1676
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1108  GCTTCACCTTTGTCACCATATCAGCCTGTTGGTGTGGGTTTGAGATATTCAACAGATCCA  1167

Query  1677  GAACACCATCATCAAGACAGGCGTGGTGGCTCAGCTGCGAGTAATTACCATCTTGATGGT  1736
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1168  GAACACCATCATCAAGACAGGCATGGTGGCTCAGCTGCGAGTAATTACCATCTTGATGGT  1227

Query  1737  CCTGAGAGTAGGTCGCCAGCCTTCCAGATGCCTGTGCAACCAGCTCTCAATCAAGATGAA  1796
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1228  CCTGAGAGTAGATCGCCAGCCTTCCAGATGCCTGTGCAACCAGCTCTCAATCAAGATGAA  1287

Query  1797  TCTCATGGACCAAATAATCGTGTTCAGTTTCGTGAGCCTCTCAGCAATACTTTTATGGAC  1856
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1288  TCTCATGGACCAAATAATCGTGTTCAGTTTCGTGAGCCTCTCAGCAATACTTTTATGGAC  1347

Query  1857  GATGCATATGCTGACGTACAAGCAGATTCAAATACAACTTTGGAAAATTCGACTTATGTG  1916
             ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1348  GATGCCTATGCTGACGTACAAGCAGATACAAATACAACTTTGGAAAATTCGACTTATGTG  1407

Query  1917  GCTGTCGATGATCCAAGCCCTTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAGCCA  1976
             ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  1408  GCTGTTGATGATCCAAGCCCCTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAACCA  1467

Query  1977  TCTTCATCATTTTCTGAGGCTGCGGATGATGATCCGTTGCCAGGTATAGCAGACTTACAG  2036
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1468  TCTTCATCATTTTCCGAGGCTGCGGATGATGATCCGTTGCCAGGTATAGCAGACTTACAG  1527

Query  2037  ATATCAGGAGAACCTTTTCCTGGGCGAGAGCTTCAGGTTTCTGGTCACTCTATCAACGGA  2096
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1528  ATATCAGGAGAACCTTTTCCTGGACGAGAGCTTCAGGTTTCTGGTCACTCTATCAACGGA  1587

Query  2097  ACGACAAAATGTAATTTTGAGTGGGTAAGACATCTGGAAGATGGATCAGTGAACTACATT  2156
             ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1588  ACGACAAAATGTAATTTTGAGTGGGTACGGCATCTGGAAGATGGATCAGTGAACTACATT  1647

Query  2157  GATGGAGCAAAGAGGCCCGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCT  2216
             ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1648  GATGGAGCAAAAAGGCCAGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCT  1707

Query  2217  ATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAGGGGGAGCTTGTGAGGGTCTTCGCC  2276
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1708  ATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAGGGGGAGCTTGTGAGGGTCTTCGCC  1767

Query  2277  AATGAAAATTGCAAGATCACGTGTCATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTT  2336
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1768  AACGAAAATTGCAAGATCACGTGTCATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTT  1827

Query  2337  TATAACGGTCATGCTTTATTCAAAGTCTCCTATTCAATTGGTTATTTGGATATATGGGAA  2396
             ||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||
Sbjct  1828  TATAACGGTCATGCTTTATTCAAAGTCTTATATTCGATTGGTTATATGGATATATGGGAA  1887

Query  2397  GCAGCTACATTGTCTATTAAGAAAGAAGGCTACAGCATCAAACCTACTAATGACCCTGTA  2456
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1888  GCAGCTACCTTGTCTATTAAGAAAGAAGGCTACAGCATCAAACCTACTAATGACCCTGTA  1947

Query  2457  ATTACAGAAAAGTTCTCCTCTTCTACTAATATTGTGATTCCCTTTGATCAGCCTGCGGAT  2516
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1948  ATTACAGAAAAGTTCTCCTCTTCTACTAATATTGTGATTCCCTTTGATCAGCCTGCGGAT  2007

Query  2517  TTTGTGATTATTGGTACCGATGGCGAGGAGCATCTCTGTCGAGTAGTGGACAATGATGCA  2576
             |||||||||||||||| |||||||| |||||||||||||||||| | || ||||||||||
Sbjct  2008  TTTGTGATTATTGGTAGCGATGGCGTGGAGCATCTCTGTCGAGT-G-GG-CAATGATGCA  2064

Query  2577  ACAGATCTTAGCTGCTCAAGAGATACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  2636
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  2065  ACAGATCTTAGCTGCTCAAGAGACACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  2124

Query  2637  ACTCTGCAGAGAAAGAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGA  2687
              ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  2125  GCTCTGCAGAGAAAAAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGA  2175


 Score = 1626 bits (880),  Expect = 0.0
 Identities = 964/1005 (96%), Gaps = 3/1005 (0%)
 Strand=Plus/Plus

Query  369   ATGGACAACGGCCATGAGGAAAGACTTGCCGAGAGGTTTTCGGGAGTGGGACTCGGAGAA  428
             ||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||
Sbjct  1     ATGGACAACGGCCATGAAGAAAGACTTGCCGAGAGGGTTTCAGGAGTGGAACTCGGAGAA  60

Query  429   TCATCTGGTTCCCATGAAAACGACGTTAAAAACGATAGCTTGTTTCAAGTTATCAAAGCT  488
             || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    TCTTCAGGTTCCCATGAAAACGACGTTAAAAACGATAGCTTGTTTCAAGTTATCAAAGCT  120

Query  489   GTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCTTAAAGGCT  548
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   GTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCTTAAAGGCT  180

Query  549   GAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATAAATCAGGAGAATCCTTGCCCCAG  608
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   GAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATAAATCAGGAGAATCCTTGCCCCAG  240

Query  609   ACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGTCTTCCCCGTTACACCAG  668
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241   ACATCTGATCTAGGAAACCACTCGAATACTACAACCGGTGGGTCTTCCCCGTTACACCAG  300

Query  669   TCGGCCGCTGGTATTAGTCTAGTTGATCGGAGGAAAGGCAAAATCAATGCTTCAGCTGCT  728
             |||||||||||||||| ||||||||| |||| |||||| ||||||| |||||||| | ||
Sbjct  301   TCGGCCGCTGGTATTAATCTAGTTGACCGGATGAAAGGAAAAATCACTGCTTCAGGTACT  360

Query  729   CATCCGTCAGGTATGCTGGTTGTTCACCAGCATGTGCATCCAAATGGAGAGGAAGCTACT  788
              || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  361   GATTCGTCAGGTATGCTGGTTGTTCACAAGCATGTGTATCCAAATGGAGAGGAAGCTACT  420

Query  789   GTGAGTAATCGTTCTGAAGACCACCATTCTGAGGGAATCATGACTAATGGCATTGTCAGA  848
             ||||||  |||||||||||||||   ||||||| ||||||||||||||||||||||||||
Sbjct  421   GTGAGTCTTCGTTCTGAAGACCA---TTCTGAGAGAATCATGACTAATGGCATTGTCAGA  477

Query  849   GGAACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGCCATCTACAATATCATTA  908
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478   GGAACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGCCATCTACAATATCATTA  537

Query  909   TCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTTACACATCAACTCGTCTTCTCAT  968
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  538   TCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTCACACATCAACTCGTCTTCTCAT  597

Query  969   GAATTGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCATGGAAGCAGGAACTCATT  1028
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  598   GAGTTGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCATGGAAGCAGGAACTCGTT  657

Query  1029  CACAAGGTCCAAGAACAAGACCAAGAGATTTTGCGCTTACGAAAATATCTTGCTGATTAT  1088
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  658   CACAAGGTCCAAGAACAAGAACAAGAGATTTTGCGCTTACGAAAATATCTTGCTGATTAT  717

Query  1089  TCTACCAAGGAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCAC  1148
             ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  718   TCTACCAAGGAAGCCCAAATACGCAATGAAAAATATGTTTTGGAAAGGCGTATTGCGCAC  777

Query  1149  ATGCGTTCGGCATTTGACCAACAACAACAAGACCTTGTTGATGCTGCATCAAAAGCTCTT  1208
             ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  778   ATGCGTTCGGCATTTGATCAACAACAACAAGACCTTGTTGATGCTGCAGCAAAAGCTCTT  837

Query  1209  TCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTAACATATGCCTTACAGGCTGCA  1268
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  838   TCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTAACATATGCCTTGCAGGCTGCA  897

Query  1269  GAGCAAGAGAGGTCTCTGTTTGTATCGATCTTGTTACCTCTTCTATCAGAATATTCGCTG  1328
             ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||
Sbjct  898   GAGCAAGAGAGGTCTATGTTTGTATCGAACTTGTTACCTCTTCTATCGGAATATTCACTG  957

Query  1329  CATCCACAGATCTCGGATTCTCAGTCTATTGTTAGCAGTGTGAAG  1373
             || |||||||||||||||||||| |||||||| |||| |||||||
Sbjct  958   CAACCACAGATCTCGGATTCTCAATCTATTGTCAGCAATGTGAAG  1002


> Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1
Length=2673

 Score =  651 bits (352),  Expect = 0.0
 Identities = 816/1029 (79%), Gaps = 76/1029 (7%)
 Strand=Plus/Plus

Query  365   GAATATGGACAACGGCCATGAGGAAAGACTT-GCCGAGAGGTTTTCGGGAGTGGGACTCG  423
             ||| ||||| |||||||| ||||| ||| || |||||||| ||||| |||||||| || |
Sbjct  365   GAAGATGGAGAACGGCCACGAGGAGAGA-TTGGCCGAGAGATTTTCCGGAGTGGGTCTTG  423

Query  424   GAGAATCA-TCTGGTTC-CCATGAAAACGACG-TTAAAAACGATAGCTTGTTTCAAGTTA  480
              || || | ||| ||||  | ||| ||||| | |||| ||||| | ||||||||| || |
Sbjct  424   AAG-ATTATTCTCGTTCGGC-TGAGAACGA-GTTTAAGAACGACAACTTGTTTCAGGTCA  480

Query  481   TCAAAGCTGTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCT  540
             ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||| ||  |
Sbjct  481   TCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGTGGAGGAGAATACCCGAT  540

Query  541   TAAAGGCTGAACTTCAGAGAAGAT-ATCTGGAGCTTGCCAAATATAAATCAGGA-GAATC  598
             |||||||||||||||||||||| |  |||||| || ||||||||||||||| || |||| 
Sbjct  541   TAAAGGCTGAACTTCAGAGAAG-TGCTCTGGAACTGGCCAAATATAAATCA-GATGAATT  598

Query  599   CTTGCCCCAGACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGT-CTTCCC  657
             ||| ||||| || ||| |||| ||| | ||||| ||| |||| | |  || || |  || 
Sbjct  599   CTTACCCCAAACTTCTAATCTCGGAGATCACTCAAATTCTACCA-C--TGTGTCCAGCCT  655

Query  658   CGTTACACCAGTCGGCCG-CTGGTATTAGTCTAGTTGATCGGAGGAAAGGCAAAATCAAT  716
              ||| |||||| | |  | |||| |  ||   ||  | |  | ||   ||     |||| 
Sbjct  656   GGTT-CACCAGCCAGTTGACTGG-A--AG--AAG-AG-T--GTGG--TGG-----TCAAA  698

Query  717   GCTTCAGCTGCTCATCCGTCAGG-TATGCTGGTTGTTCACCAGCATGTGCATCCAAATGG  775
             ||||| | |||| || | ||||| | |||||||||||||||  |||||| || | |||||
Sbjct  699   GCTTCGGATGCTGATTCATCAGGCT-TGCTGGTTGTTCACCCCCATGTGAATGCTAATGG  757

Query  776   AG-AGGAAGCTACTGTGAGTAATCGTTCTG-AAGACCACCATTCTG-AGGGAATCATGAC  832
              | | |||||||||||||||||||||| || ||| ||| |  |||| | ||||  || | 
Sbjct  758   TGCA-GAAGCTACTGTGAGTAATCGTTTTGAAAG-CCA-C--TCTGCA-GGAAAAATAAT  811

Query  833   TAATGGCATTGTCAGAGGA-ACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGC  891
             ||||||||||||||||||| | | ||| |||||  ||  ||||||||     ||  | | 
Sbjct  812   TAATGGCATTGTCAGAGGAGA-TATAGATGGTGCTGGTCCCTCTCAA-----TT--T-G-  861

Query  892   CATCTACAATATCATTATCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTTACACA  951
              || | |    ||||||||||||||||||  ||  ||||||||||| ||||    |||| 
Sbjct  862   -AT-T-C---GTCATTATCTCCTATGAGAATGCGGTTGGAAGGAGAGCATGTGGCACACG  915

Query  952   TCAACTCGTCTTCTCATGAAT-TGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCA  1010
             |||  |||||| |||||| || | |||||| | |||||||||||| |||| || | ||||
Sbjct  916   TCAGTTCGTCTACTCATGGATCT-ATGCCATTTGGTGAAGTAAATCATTCAGGCAATGCA  974

Query  1011  TGGAAGCAGGAACTCATTCACAAGGTCCAAGAACAAGACCAAGAGATTTTGCGCTT-ACG  1069
             ||||||||||| ||||||||||||||||| || || || ||||| |||| || ||| | |
Sbjct  975   TGGAAGCAGGACCTCATTCACAAGGTCCAGGAGCAGGAACAAGAAATTTCGCACTTGAAG  1034

Query  1070  AAAATATCTTGCTGATTATTCTACCAAGGAAGTCCAAATACGCAATGAAAAATATGTTTT  1129
              ||||||||| |||| | ||||   ||||||| |||||| |||||||||||||||||| |
Sbjct  1035  -AAATATCTTACTGACTGTTCTGTTAAGGAAGCCCAAATTCGCAATGAAAAATATGTTCT  1093

Query  1130  GGAAAAGCGTATTGCGC-ACATGCGTTC-GGCATTTGACCAACAACAACAAGACCTTGTT  1187
             ||||||||| ||||| | ||||||| || ||||||||| ||||| |||||||| ||||||
Sbjct  1094  GGAAAAGCGAATTGC-CTACATGCG-TCTGGCATTTGATCAACAGCAACAAGATCTTGTT  1151

Query  1188  GATGCTGCATCAAAAGCTCTTTCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTA  1247
             ||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  1152  GATACTTCATCAAAAGCTCTCTCTTACAGACAAGAGATAATTGAGGAAAATATACGCCTA  1211

Query  1248  ACATATGCCTTACAGGCTGCAGAGCAAGAGAGGTCT-CTGTTTGTATCGAT-CTTGTTAC  1305
             |||||||||||||||||| || | ||||| || ||| |  |||||||| || ||||||||
Sbjct  1212  ACATATGCCTTACAGGCTACACATCAAGAAAGATCTACA-TTTGTATC-ATACTTGTTAC  1269

Query  1306  CTCT-TCTATCAGAATATTCGCTGCATCCACAGATCTCGGATTCTCAGTCTATTGTTAGC  1364
             |||| | |||| || ||||| ||||| |||||| | || ||| |||||||||||||||||
Sbjct  1270  CTCTGT-TATCGGAGTATTCTCTGCAACCACAGGTTTCTGATGCTCAGTCTATTGTTAGC  1328

Query  1365  AGTGTGAAG  1373
             | |||||||
Sbjct  1329  AATGTGAAG  1337


> Ahg940327 jgi|Araly1|940327|scaffold_600871.1
Length=463

 Score =  560 bits (303),  Expect = 2e-158
 Identities = 325/335 (97%), Gaps = 3/335 (1%)
 Strand=Plus/Plus

Query  2302  ATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTTTATAACGGTCATGCTTTATTCAAAG  2361
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  46    ATCCGGAGATGCAGAGTCATATAGAGAAGAGTCTTTATAACGGTCATGCTTTATTCAAAG  105

Query  2362  TCTCCTATTCAATTGGTTATTTGGATATATGGGAAGCAGCTACATTGTCTATTAAGAAAG  2421
             |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct  106   TCTCCTATTCGATTGGTTATATGGATATATGGGAAGCAGCTACCTTGTCTATTAAGAAAG  165

Query  2422  AAGGCTACAGCATCAAACCTACTAATGACCCTGTAATTACAGAAAAGTTCTCCTCTTCTA  2481
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  166   AAGGCTACAGCATCAAACCTACTAATGACCCTGTAATTACAGAAAAGTTCTCCTCTTCTA  225

Query  2482  CTAATATTGTGATTCCCTTTGATCAGCCTGCGGATTTTGTGATTATTGGTACCGATGGCG  2541
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  226   CTAATATTGTGATTCCCTTTGATCAGCCTGCGGATTTTGTGATTATTGGTAGCGATGGCG  285

Query  2542  AGGAGCATCTCTGTCGAGTAGTGGACAATGATGCAACAGATCTTAGCTGCTCAAGAGATA  2601
              |||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
Sbjct  286   TGGAGCATCTCTGTCGAGT-G-GG-CAATGATGCAACAGATCTTAGCTGCTCAAGAGACA  342

Query  2602  CAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  2636
             |||||||||||||||||||||||||||||||||||
Sbjct  343   CAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 108861920210


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5