BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08460.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487685 jgi|Araly1|487685|fgenesh2_kg.6__819__AT5G08460.1 1827 0.0
Ahg892791 jgi|Araly1|892791|Al_scaffold_0006_787 1724 0.0
Ahg940329 jgi|Araly1|940329|scaffold_600873.1 743 0.0
Ahg940330 jgi|Araly1|940330|scaffold_600874.1 553 1e-156
> Ahg487685 jgi|Araly1|487685|fgenesh2_kg.6__819__AT5G08460.1
Length=1180
Score = 1827 bits (989), Expect = 0.0
Identities = 1119/1183 (95%), Gaps = 3/1183 (0%)
Strand=Plus/Plus
Query 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCATAGTACAA 60
Query 61 ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA 120
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 TCATTAGTACTTGTTCCATGGTTTCTAGTAGTAGCAGTACTCGCTGGTGGAGAAGACTCA 120
Query 121 TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC 180
||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 TCC--GA-TACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCATTGGTGGACAAC 177
Query 181 GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT 240
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 178 GGAAACAATAACCACTTGAACTCACTAGCTAGGTCCAACTATCTTCCTTACGGCATTGAT 237
Query 241 TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT 300
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 TTCGCTGGAAATCAACCCACCGGTCGGTTCTCTAACGGCAAAACTATCGTCGATTTCATA 297
Query 301 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG 360
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 298 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCATTTATGGACACGGTGGACGGAGGAGTG 357
Query 361 GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 420
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 417
Query 421 CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA 480
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CGGCATCTGGGAGAGAGATTCAGCATGGGAAGACAAGTAGAGAACTTCGAGAAGACATTA 477
Query 481 ATGGAGATAAGTAGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTG 540
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 478 ATGGAGATAAGTAGAAGCATGAGGAAAGAGTCAGTAAAGGAGTATATGGCAAAGTCATTG 537
Query 541 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTATTC 597
Query 601 CTCTCAAGCTCTATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTCACC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCTCAAGCTCCATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTCACC 657
Query 661 ACTCATCTCCTTGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGT 720
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACTCATCTCCTTGTATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGT 717
Query 721 CCATTGGGTTGCATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGTC 780
||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||
Sbjct 718 CCATTGGGTTGCATACCGGACCAACTAGCCGCCCGAGAGGCTCCGCCAGGTGAATGTGTG 777
Query 781 GAGGCTGTAAACGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCGT 840
||||| || ||||||||||||||||| ||||||||| | || || ||||||||||| |||
Sbjct 778 GAGGCGGTTAACGAGATGGCTGAACTCTTCAACAACGGCCTCGTGTCGCTGGTGGACCGT 837
Query 841 CTCAATTCCGATAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGGTAATACCTATGGA 900
|| |||||| ||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 838 CTTAATTCCAATAGTAAAACTGCTAGTGAAGCCATCTTTGTTTATGGCAATACCTATGGA 897
Query 901 GCCGCCGTGGATATTCTCACCAACCCATTTAATTACGGATTCGAAGTGACGGATAGAGGG 960
|||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 898 GCCGCCGTGGATATCCTCACAAACCCTTTTAGTTACGGATTCGAAGTGACGGATAGAGGG 957
Query 961 TGTTGTGGAGTAGGGAGAAATAGAGGAGAAATAACGTGTCTGCCATTAGCGGTACCATGC 1020
|||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 958 TGTTGTGGAGTAGGTAGAAACAGAGGAGAAATAACGTGTTTGCCACTAGCGGTACCATGT 1017
Query 1021 GCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCTC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCTC 1077
Query 1081 ATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTCT 1137
Query 1141 CAACTTTCTCGTCTCTAAACCCTCAACAAATCCTTCTCTTTTT 1183
||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1138 CAACTGTCTCGTCTCTAAACACTCAACAAATCCTTCTCTTTTT 1180
> Ahg892791 jgi|Araly1|892791|Al_scaffold_0006_787
Length=1152
Score = 1724 bits (933), Expect = 0.0
Identities = 1086/1160 (94%), Gaps = 10/1160 (1%)
Strand=Plus/Plus
Query 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA 60
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGCATGATAGTGAAATATTCAAATTTAAAGAC---ATGATGATGTCTTGCACAGTACAA 57
Query 61 ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA 120
||||||| |||||||||||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct 58 TCATTAGTGCTTGTTCCATGGTTTCTAGTAGTAGTAGGACTTGCCGGTGGAGAAGTCTCA 117
Query 121 TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC 180
||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 118 TCC--GA-GACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCGTTGGTGGACAAC 174
Query 181 GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 175 GGAAACAATAACCACTTGAACTCATTGGCTAGGTCCAACTATCTCCCTTACGGCATTGAT 234
Query 241 TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT 300
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTCGCCGGAAATCAACCCACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATG 294
Query 301 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG 360
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 295 GGAGAGTTGCTAGGGCTGCCGGAGATACCCGCATTTATGGACACGGTGGACGGAGGAGTG 354
Query 361 GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 420
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 414
Query 421 CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA 480
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 415 CGACATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAAAAGACATTA 474
Query 481 ATGGAGATAAGTAGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTG 540
|||||||| |||||||||||||||| ||||||||| || || || |||||||||||||||
Sbjct 475 ATGGAGATCAGTAGGAGCATGAGGAGAGAGTCAGTAAAAGAGTACATGGCAAAGTCATTG 534
Query 541 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 535 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTTTTT 594
Query 601 CTCTCAAGCTCTATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTC-AC 659
||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 595 CTCACTAGCTCCATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAA-TTCTAC 653
Query 660 CACTCATCTCCTTGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 CACTCATCTCCTTGAATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGG 713
Query 720 TCCATTGGGTTGCATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGT 779
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 714 TCCATTGGGTTGCATACCGGACCAACTAGCCGCCCGAGCGGCTCCGCCAGGTGAATGTGT 773
Query 780 CGAGGCTGTAAACGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCG 839
||||| || ||||||||||||||||| ||||||||||| || || ||||||||||| ||
Sbjct 774 GGAGGCGGTTAACGAGATGGCTGAACTCTTCAACAACCGCCTCGTGTCGCTGGTGGACCG 833
Query 840 TCTCAATTCCGATAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGGTAATACCTATGG 899
||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 834 TCTTAATTCCGATAGTAAAACTGCTAGTGAAGCCATCTTTGTTTATGGCAATACCTATGG 893
Query 900 AGCCGCCGTGGATATTCTCACCAACCCATTTAATTACGGATTCGAAGTGACGGATAGAGG 959
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 894 AGCCGCCGTGGATATCCTCACAAACCCTTTTAATTACGGATTCGAAGTGACGGATAGAGG 953
Query 960 GTGTTGTGGAGTAGGGAGAAATAGAGGAGAAATAACGTGTCTGCCATTAGCGGTACCATG 1019
||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 954 GTGTTGTGGAGTAGGTAGAAACAGAGGAGAAATAACGTGTTTGCCACTAGCGGTACCATG 1013
Query 1020 CGCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCT 1079
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1014 TGCTTTCAGAGACCGACATGTGTTCTGGGATGCTTTTCATCCAACACAAGCTTTTAATCT 1073
Query 1080 CATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTC 1139
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1074 CATAATTGCACTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCTATTAATCTTTC 1133
Query 1140 TCAACTT-TCTCGTCTCTAA 1158
|||| || ||||||||||||
Sbjct 1134 TCAA-TTGTCTCGTCTCTAA 1152
> Ahg940329 jgi|Araly1|940329|scaffold_600873.1
Length=542
Score = 743 bits (402), Expect = 0.0
Identities = 467/498 (94%), Gaps = 6/498 (1%)
Strand=Plus/Plus
Query 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA 60
||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 23 ATGGATGATAGTGAAATATTCAAATTTAAAGAC---ATGATGATGTCTTGCACAGTACAA 79
Query 61 ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA 120
||||||| |||||||||||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct 80 TCATTAGTGCTTGTTCCATGGTTTCTAGTAGTAGTAGGACTTGCCGGTGGAGAAGTCTCA 139
Query 121 TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC 180
||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 140 TCC--GA-GACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCGTTGGTGGACAAC 196
Query 181 GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 197 GGAAACAATAACCACTTGAACTCATTGGCTAGGTCCAACTATCTCCCTTACGGCATTGAT 256
Query 241 TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT 300
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TTCGCCGGAAATCAACCCACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATG 316
Query 301 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG 360
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 317 GGAGAGTTGCTAGGGCTGCCGGAGATACCCGCATTTATGGACACGGTGGACGGAGGAGTG 376
Query 361 GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 420
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 436
Query 421 CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA 480
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 437 CGACATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAAAAGACATTA 496
Query 481 ATGGAGATAAGTAGGAGC 498
|||||||| |||||||||
Sbjct 497 ATGGAGATCAGTAGGAGC 514
> Ahg940330 jgi|Araly1|940330|scaffold_600874.1
Length=481
Score = 553 bits (299), Expect = 1e-156
Identities = 364/396 (92%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 493 AGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTGGTGGTGGTGTCA 552
||||||||||||| ||||||||| || || || ||||||||||| |||||||||||||||
Sbjct 18 AGGAGCATGAGGAGAGAGTCAGTAAAAGAGTACATGGCAAAGTCCTTGGTGGTGGTGTCA 77
Query 553 TTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTCCTCTCAAGCTCT 612
|||||||||||||||||||||||||||||||||||||||| ||| || ||| | |||||
Sbjct 78 TTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTTTTTCTCACTAGCTCC 137
Query 613 ATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTC-ACCACTCATCTCCT 671
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 138 ATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAA-TTCTACCACTCATCTCCT 196
Query 672 TGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGTCCATTGGGTTG 731
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TGAATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGGTCCATTGGGTTG 256
Query 732 CATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGTCGAGGCTGTAAA 791
|||||| |||||| ||||||||| |||||||| ||||||||||||||| ||||| || ||
Sbjct 257 CATACCGGACCAAGTAGCCGCCCGAGCGGCTCCGCCAGGTGAATGTGTGGAGGCGGTTAA 316
Query 792 CGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCGTCTCAATTCCGA 851
||||||||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct 317 CGAGATGGCTGAACTCTTCAACAACCGCCTCGTGTCGCTGGTGGACCGTCTTAATTCCGA 376
Query 852 TAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGG 887
|| ||||| |||||||||||||||||||||| |||
Sbjct 377 TAGTAAAACTGCTAGTGAAGCCATCTTTGTTTGCGG 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5