BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08480.2
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887549 jgi|Araly1|887549|Al_scaffold_0487_2 968 0.0
Ahg892780 jgi|Araly1|892780|Al_scaffold_0006_776 859 0.0
Ahg940334 jgi|Araly1|940334|scaffold_600878.1 401 4e-111
> Ahg887549 jgi|Araly1|887549|Al_scaffold_0487_2
Length=657
Score = 968 bits (524), Expect = 0.0
Identities = 596/628 (95%), Gaps = 16/628 (3%)
Strand=Plus/Plus
Query 275 TCAGAGAAACACTTACATATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAG 334
||| |||| ||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 34 TCAAAGAAGGACTTACATATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAG 90
Query 335 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 150
Query 395 ACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 454
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 ACAGGTCCATCAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 210
Query 455 GCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 514
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GCCATACAAAAGAGGCCGACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 270
Query 515 CTTGAAATTGTCAAACCTCCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 574
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 271 CTTGAAATTGTCAAACCTCCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 330
Query 575 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 390
Query 635 TTGTCCTTGATAGAAGGGGA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAA 685
|||||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 391 TTGTCCTTGATAGAAGGGGAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAA 450
Query 686 GAGGAGAAAGCCATTAAAGAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCG 745
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAGGAGAAAGCCATTAAAGAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCA 510
Query 746 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGC 805
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 511 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGG- 569
Query 806 AAACCATAAACCCGACAGATTAATCATAAGTTTGTTCTCTGCCTACTATCCCA-AAGATT 864
|||||||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||
Sbjct 570 AAACCATAAACCCGACAGATTAATCATAAGCTTGTTCTCTGTCTATTACCCCCCAAGATT 629
Query 865 ATGTA-CATGTAGAGTTTCACAACAATA 891
|||| ||||||||||||||||||||||
Sbjct 630 -TGTAACATGTAGAGTTTCACAACAATA 656
> Ahg892780 jgi|Araly1|892780|Al_scaffold_0006_776
Length=528
Score = 859 bits (465), Expect = 0.0
Identities = 511/531 (96%), Gaps = 12/531 (2%)
Strand=Plus/Plus
Query 293 ATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAGCCTGTCACTACATTTGTC 352
||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAGCCTGTCACTACATTTGTC 57
Query 353 CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCAACAGAGAAC 412
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 58 CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCATCAGAGAAC 117
Query 413 AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCA 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCG 177
Query 473 ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT 237
Query 533 CCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT 592
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT 297
Query 593 TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG 357
Query 653 GA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA 703
|| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA 417
Query 704 GAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAA 763
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 GAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCAGGGTATACAGAACCAGAA 477
Query 764 TTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAA 814
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 TTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGGCAAACCATAA 528
> Ahg940334 jgi|Araly1|940334|scaffold_600878.1
Length=486
Score = 401 bits (217), Expect = 4e-111
Identities = 237/246 (96%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 268 TGTTTTGTCAGAGAAACACTTACATATGAATAGCAAAGGGAGTCAAAACGTTGCAACAAC 327
||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 1 TGTTTTGTCAGAGAAGGACTTACATATGAATAACAAAGGGAGTCAGAACGTTG---CAAC 57
Query 328 CTGCAAGCCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTGCAAGCCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCA 117
Query 388 GCGCTTGACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGAT 447
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCGCTTGACAGGTCCATCAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGAT 177
Query 448 AAAAACCGCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAG 507
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 AAAAACCGCCATACAAAAGAGGCCGACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAG 237
Query 508 GCCAAA 513
||||||
Sbjct 238 GCCAAA 243
Score = 375 bits (203), Expect = 2e-103
Identities = 234/247 (95%), Gaps = 9/247 (4%)
Strand=Plus/Plus
Query 597 CAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAA---G-G- 651
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 240 CAAATCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGGGAGA 299
Query 652 --G--GAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAAGAAA 707
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 AAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAAGAGA 359
Query 708 GACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAATTGC 767
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 GACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCAGGGTATACAGAACCAGAATTGC 419
Query 768 TTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAAACCCGACAGATTA 827
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGGCAAACCATAAACCCGACAGATTA 479
Query 828 ATCATAA 834
|||||||
Sbjct 480 ATCATAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5