BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08505.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325447 jgi|Araly1|325447|fgenesh1_pm.C_scaffold_6000667 383 3e-106
> Ahg325447 jgi|Araly1|325447|fgenesh1_pm.C_scaffold_6000667
Length=240
Score = 383 bits (207), Expect = 3e-106
Identities = 230/241 (95%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCACTAAGAAAATATTAG-TAGTATTTGCTTTCACCATTATGTTGGGGATCTC 59
||||||||||||||||||||||| | ||||||||||||||| ||||||||| || ||||
Sbjct 1 ATGGATTTCACTAAGAAAATATT-GTTAGTATTTGCTTTCATCATTATGTTAGGTATCTA 59
Query 60 TTCTGTTCATTGCCGTCCAAGTTTCAAACCCATCCCTTTGTTTGGAGAAAAATTGACTCA 119
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 60 TTCTGTTCATTGCCGTCCAAGTTTCAAACCCATACCTTTGTTTGAAGAAAAATTGACTCA 119
Query 120 GTGTTTCGACACAAGACCATGTCTGCAAGGGATGTTGAAATGCATTGAATTCTGTAGCTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTGTTTCGACACAAGACCATGTCTGCAAGGGATGTTGAAATGCATTGAATTCTGTAGCTC 179
Query 180 AATGGGGACTGCCGATGGACAATGTAATAATGAAAACCTATGTTGTTGCACACATGAATG 239
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 180 AATGGGGACTGCGGATGGACAATGTAATAATGAAAACCTTTGTTGCTGCACACATGAATG 239
Query 240 A 240
|
Sbjct 240 A 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5