BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08510.1
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487690 jgi|Araly1|487690|fgenesh2_kg.6__824__AT5G08510.1 2405 0.0
Ahg940325 jgi|Araly1|940325|scaffold_600869.1 335 8e-91
Ahg929307 jgi|Araly1|929307|scaffold_301764.1 54.7 3e-06
> Ahg487690 jgi|Araly1|487690|fgenesh2_kg.6__824__AT5G08510.1
Length=1589
Score = 2405 bits (1302), Expect = 0.0
Identities = 1501/1596 (94%), Gaps = 18/1596 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGGATCAAGCAACTCCACGCGCACTGTCTGAGAACAGGCGTAGACGAAACCAAA 60
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCAGATCAAGCAGCTCCACGCGCACTGTCTGAGAACAGGCGTAGACGAAACCAAA 60
Query 61 GATCTCTTACAACGATTGCTTCTGATACCAAACCTTGTTTATGCCCGAAAACTCTTCGAT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 GATCTCTTACAACGATTGCTTCTGATTCCAAACCTTGTTTATGCCCGAAAGCTCTTCGAT 120
Query 121 CATCATCAAAATTCTTGTACT-TTCCTCTACAACAAGCTCATTCAAGCTTACTATGTTCA 179
| ||||| ||| |||||| | ||||||||||||||||| |||||| |||||| ||||||
Sbjct 121 CTTCATCGAAACCCTTGTA-TCTTCCTCTACAACAAGCTGATTCAATCTTACTCTGTTCA 179
Query 180 TCACCAGCCCCATGAATCTATCGTCCTCTATAATCTCCTCTCCTTCGATGGTC-TCCGTC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 180 TCATCAGCCCCATGAATCTATCGTCCTCTATAATCTCCTCTCCTTCGATGG-CATCCGTC 238
Query 239 CAAGTCACCACACTTTCAATTTCATTTTCGCAGCTTCTGCTTCGTTTTCTTCCGCTCGAC 298
||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 239 CAAATCACCACACTTTCAATTTCATTTTCGCAGCTTCTGCTTCGTTTTCGTCAGCTCGGC 298
Query 299 CTTTACGGTTGCTTCATTCTCAGTTTTTTAGATCTGGGTTTGAGTCCGATTCGTTCTGCT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CTTTACGGTTGCTTCATTCTCAGTTTTTTAGATCTGGGTTTGAGTCCGATTCCTTCTGCT 358
Query 359 GCACTACCCTAATCACTGCCTATGCGAAGCTAGGAGCTTTGTGTTGTGCGCGCAGAGTGT 418
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCACTGCTCTAATCACTGCCTATGCGAAGCTAGGAGCTTTGTGTTGTGCGCGCAGAGTGT 418
Query 419 TCGACGAAATGTCTAAGAGAGATGTACCCGTGTGGAATGCAATGATCACGGGCTACCAAC 478
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 TCGACGAAATGTCTAACCGAGATGTACCCGTGTGGAATGCAATGATCACGGGTTACCAAA 478
Query 479 GACGAGGTGATATGAAGGCGGCGATGGAGTTGTTTGATTCAATGCCTCGTAAGAACGTAA 538
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 479 GACGAGGTGATATGAAGGCGGCGATGGAGTTGTTTGACTCAATGCCTAATAAGAACGTAA 538
Query 539 CCTCGTGGACCACCGTCATTTCTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTCGTGGACCACCGTCATTTCTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAA 598
Query 599 AGATGTTTTTGTGTATGGAGAAAGACAAGTCCGTGAAACCAAACCATATTACTGTAGTTA 658
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 599 CGATGTTTTTGTGTATGGAGAAAGACAAATCCGTGAAACCAAACCATATTACTCTAGTTA 658
Query 659 GTGTACTCCCCGCTTGTGCGAATCTGGGGGAATTGGAGATTGGCCGAAGATTAGAAGGCT 718
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 GTGTTCTCCCCGCTTGTGCGAATCTAGGGGAATTGGAGATTGGCCGAAGATTAGAAGGCT 718
Query 719 ATGCTAGAGAGAACGGGTTCTTTGATAACATTTACGTGTGTAATGCCACAATAGAGATGT 778
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 719 ATGCTAGAGAGAACGGGTTCTTTGATAACATTTACGTGCGTAATGCTACACTAGAGATGT 778
Query 779 ACTCAAAATGTGGAATGATTGATGTAGCGAAACGCTTATTCGAGGAACTTGGAAACCAGA 838
|||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct 779 ACTCAAAATGTGGAATGATTGATGTAGCGAAACGGTTATTCGATGAAATTGGGAACCAGC 838
Query 839 GAAATTTG-TGCTCATGGAACTCCATGATTGGTAGTCTAGCTACTCACGGGAAACATGAC 897
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 839 GAAATTTGAT-CTCATGGAACTCCATGATCGGTAGTCTAGCTACTCACGGGAAACACGAC 897
Query 898 GAAGCTCTT-ACGCTTTTTGCCCAAATGTTGCGAGAAGGTGAGAA-ACCCGATGCAGTGA 955
||||||||| | ||||| |||||||||||||| |||||| || || ||||||||||||||
Sbjct 898 GAAGCTCTTGA-GCTTTATGCCCAAATGTTGCAAGAAGGAGA-AAGACCCGATGCAGTGA 955
Query 956 CATTTGTTGGATTGTTGCTAGCTTGTGTTCATGGTGGGATGGTGGTGAAGGGCCAAGAAT 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 956 CATTTGTTGGATTGTTGCTAGCTTGTGTTCATGGTGGGATGGTGTTGAAGGGCAAAGAAT 1015
Query 1016 TGTTCAAGTCCATGGAGGAAGTTCACAAGATTTCCCCAAAGCTAGAGCATTATGGATGCA 1075
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1016 TGTTCAAGTCCATGGAGGAAGTTCACAAGATTTCGCCAAAGCTAGAGCACTATGGATGCA 1075
Query 1076 TGATCGATCTCTTGGGGCGTGTTGGAAAGCTGCAAGAAGCCTATGATCTCATCAAAACAA 1135
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1076 TGATCGATCTCTTGGGGCGTGTTGGGAAGCTGCAAGAAGCCTGTGATCTCATCAAAACAA 1135
Query 1136 TGCCAATGAAACCAGATGCTGTCGTATGGGGAACCCTTCTGGGTGCTTGTAGTTTCCACG 1195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 1136 TGCCAATGAAACCAGATGCTGTCGTATGGGGAACCCTTTTGGGTGCTTGTAGTTTTCATG 1195
Query 1196 GAAATGTTGAGATAGCAGAGATAGCAAGTGAGGCACTGTTCAAGCTTGAACCTACAAATC 1255
| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1196 GCAATGTTGAGATAGCAGAGATAGCAAGTGAGGCACTGATGAAGCTTGAACCCACAAATC 1255
Query 1256 CAGGTAACTGTGTGATCATGTCAAATATCTACGCCGCCAATGAGAAGTGGGATGGAGTTT 1315
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1256 CAGGTAACTGTGTGATCATGTCAAACATCTACGCAGCCAATGAGAAGTGGGATGGAGTTT 1315
Query 1316 TGAGGATGCGGAAGTTGATGAAGAAGGAAACGATGACAAAGGCTGCTGGATATAGCTATT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGAGGATGCGGAAGTTGATGAAGAAGGAAACGATGACAAAGGCTGCTGGATATAGCTATT 1375
Query 1376 TTGTGGAAGTTGGAGTTGATGTTCATAAATTTACTGTGGAAGATAAATCACACCCAAGAT 1435
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTGTGGAAGCAGGAGTTGAAGTTCATAAATTTACTGTGGAAGATAAATCACACCCAAGAT 1435
Query 1436 CTTATGAGATCTATCAGGTTCTTGAGGAGATTTTCAGGAGAATGAAACTGGAA-AAGAGT 1494
||||||||||||||||||||||||| | |||| ||| |||||||||| | || ||||||
Sbjct 1436 CTTATGAGATCTATCAGGTTCTTGACAAAATTTCCAGTAGAATGAAACCG-AAGAAGAGT 1494
Query 1495 CGCTTTGATTCTTTGCTTCAGCCTGAACAACTATGCATATGAAAGTAGATGTTTTGTT-- 1552
|| ||||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||||
Sbjct 1495 CGGTTTGATTCTATGCTTCAGCTTGACCAAGTATGCATATGAAAGGAGATGTTTTGTTTG 1554
Query 1553 --CACTT-TGCCAATAACAATGACTGAATCTTTTGA 1585
||||| | ||| ||||||||||||||||| ||||
Sbjct 1555 TTCACTTGT-CCAGTAACAATGACTGAATCTATTGA 1589
> Ahg940325 jgi|Araly1|940325|scaffold_600869.1
Length=296
Score = 335 bits (181), Expect = 8e-91
Identities = 205/217 (94%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 440 ATGTACCCGTGTGGAATGCAATGATCACGGGCTACCAACGACGAGGTGATATGAAGGCGG 499
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ATGTACCCGTGTGGAATGCAATGATCACGGGTTACCAAAAACGAGGTGATATGAAGGCGG 60
Query 500 CGATGGAGTTGTTTGATTCAATGCCTCGTAAGAACGTAACCTCGTGGACCACCGTCATTT 559
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATGGAGTTGTTCGATTCAGTTCCTCGTAAGAACGTAACCTCGTGGACCACCGTCATTT 120
Query 560 CTGGGTTTTCTCAGAACGGGAATTACTCTGAAGCTTTAAAGATGTTTTTGTGTATGGAGA 619
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTGGGTTTTCTCAGAACGGAAATTACTCTGAAGCTTTAACCATGTTTTTGTGTATGGAGA 180
Query 620 AAGACAAGTCCGTGAAACCAAACCATATTACTGTAGT 656
|| |||| |||||||||||||||||||||||| ||||
Sbjct 181 AATACAAATCCGTGAAACCAAACCATATTACTCTAGT 217
> Ahg929307 jgi|Araly1|929307|scaffold_301764.1
Length=1595
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 414 AGTGTTCGACGAAATGTCTAAGAGAGATG 442
|||||||||||||||||||||||||||||
Sbjct 494 AGTGTTCGACGAAATGTCTAAGAGAGATG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72181014275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5