BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08520.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487691 jgi|Araly1|487691|fgenesh2_kg.6__825__AT5G08520.1 2100 0.0
Ahg894246 jgi|Araly1|894246|Al_scaffold_0006_2242 159 5e-38
> Ahg487691 jgi|Araly1|487691|fgenesh2_kg.6__825__AT5G08520.1
Length=1638
Score = 2100 bits (1137), Expect = 0.0
Identities = 1300/1375 (95%), Gaps = 25/1375 (2%)
Strand=Plus/Plus
Query 394 TTCTCTTTATATCCCTAGTTTAGTTGTATGGTTGGGTTTTGATTGGAATATCAAGGGGTA 453
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 283 TTCTCTTTATATCCGTAGTTTAGTTGTATGGTTGGGCTTTGATTGGAATATCAA-GGCTA 341
Query 454 GTTTTTAGCTAGGTTCACTGATACTTGGAAGATCTGAGTTCTT--TGGGATTCTGTTAAG 511
||||||||||||||||| ||||||||||||||||||||||||| || | || | | ||
Sbjct 342 GTTTTTAGCTAGGTTCAGTGATACTTGGAAGATCTGAGTTCTTCGTGTG-TT-T-CTCAG 398
Query 512 -TTTGTGGAGATCTAAAAGACACGAAATTTG-TAGAAATCTGGTTGATATCCCAGA-CTT 568
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 399 CTTTGTGGAGATCTAAAAGACACGAAATTTGCT-GAAATCTGGTTGATATCCCAGATTTT 457
Query 569 TTAGAGGGATTAGGGTAGATTCTATAGAATTTGAGGCGGGTTTGATTGGAATTATGACGG 628
||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||
Sbjct 458 TTAGAGGGATTAGGGTAGATTCTGTTGAATTTG-TGCGGGTTTGATTGGAAACATGACGG 516
Query 629 TGGAGGAAGTTAGTGATGGTTCTGTGTGGAGTAGGGAGGATGATATTGCCTTTGAGAGAG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TGGAGGAAGTTAGTGATGGTTCTGTGTGGAGTAGGGAGGATGATATTGCCTTTGAGAGAG 576
Query 689 CTCTAGCCAATAATACCGATGAATCAGAGGAACGGTGGGAGAAGATTGCTGCAGACGTTC 748
||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 577 CTCTAGCTAATAATACTGATGAATCAGAGGAACGCTGGGAGAAGATTGCTGCTGATGTTC 636
Query 749 CAGGCAAAAGTGTTGAACAGATTAAAGAACATTACGAGCTTTTAGTTGAAGATGTTACTA 808
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 637 CAGGGAAAAGTGTTGAACAGATTAAAGAACATTATGAGCTTTTAGTTGAAGATGTTAGTA 696
Query 809 GGATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTGAAGGATCGAATGGCC 868
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 697 GGATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTCAAGGATCAAATGGTC 756
Query 869 ATGCTGGTGATGAAGGAGCAAGTAGTAAGAAAGGAGGTAACAGTCATGCGGGAGAGTCTA 928
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 757 ATGCTGGTGATGAAGGAGGAAGTAGTAAGAAAGGAGGTAACAATCATGCGGGAGAGTCTA 816
Query 929 ACCAAGCAGGTAAATCAAAGTCCGATCAAGAACGACGAAAGGGTATCGCGTGGACAGAAG 988
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 817 ACCAAGGAGGTAAATCAAAGTCCGATCAAGAACGACGAAAGGGTATTGCGTGGACAGAAG 876
Query 989 ATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAGTACGGGAAAGGTGATTGGCGTAGCA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAGTACGGGAAAGGTGATTGGCGTAGCA 936
Query 1049 TTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTTGCGAGCCATGCTCAAAAGT 1108
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 937 TTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTCGCGAGCCACGCTCAAAAGT 996
Query 1109 ATTTCATTCGTCTAAATTCAATGAACAAAGACAGAAGGCGATCAAGCATTCACGACATCA 1168
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATTTCATTCGTCTAAACTCAATGAACAAAGACAGAAGGCGATCAAGCATTCACGACATCA 1056
Query 1169 CTAGTGTTGGCAACGCAGATGTCTCAACGCCACAAGGACCAATCACTGGTCAGaacaaca 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTAGTGTTGGCAACGCAGATGTCTCAACGCCACAAGGACCAATCACTGGTCAGAACAACA 1116
Query 1229 gcaataacaacaacaacaacaacaacaacaacaGTTCTCCTGCTGTTGCTGGAGGAGGAA 1288
|||| ||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1117 GCAA---CAACAACAACAACAACA-C--CA---GTTCTCCTGCTGTTGCTGGAGGAGGAA 1167
Query 1289 ACAAATCAGCCAAGCAAGCCGTCTCTCAAGCACCACCTGGACCTCCTATGTATGGAACAC 1348
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1168 ACAAATCAGCCAAGCAAGCCGTCTCTCAAGCACCACCTGGAGCTCCTATGTATGGAACAC 1227
Query 1349 CCGCCATAGGTCAGCCAGCAGTTGGAACACCAGTGAACCTCCCAGCTCCACCTCACATGG 1408
|| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CCACCATAGGTCAACCAGTAGTTGGAACACCAGTGAACCTCCCAGCTCCACCTCACATGG 1287
Query 1409 CTTATGGAGTTCATGCGGCTCCAGTCCCTGGCTCAGTGGTTCCTGGTGCAGCAATGAACA 1468
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1288 CTTATGGAGTCCATGCTGCTCCAGTCCCTGGCTCGGTGGTTCCTGGTGCAGCAATGAACA 1347
Query 1469 TTGGTCAAATGCCGTACACCATGCCGCGTACACCAACGGCTCATAGGTAACTCGAAAGCA 1528
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1348 TGGGTCAAATGCCGTACACCATGCCGCGCACACCAACGGCTCATAGGTAACTCGAAAGCA 1407
Query 1529 CCTTTGCTGTCATAGTGCACTTTGTTTTTAGGTGTAAGAAAGAAGATGTGTAAAGGATTT 1588
||||||| || ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1408 CCTTTGCAGTGATAGTGCACTTGGTTTT-AGGTGTAAGAAAGA---TGTGTAAAGGATTT 1463
Query 1589 AGTGAATATTCAA-GCTTGTTCCTTGAGTGAGttttttttATTACTTAGTTTGTGGGGAT 1647
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 AGTGAATATTCAAAGCTTGTTCCTTGAGTGAGTTTTTTTTATTACTTAGTTTGTGGGGAT 1523
Query 1648 TTTGTATGAGGTCCGAATAAGATATGAAGATGACATGATTAGTTTCCAGACTCGAGAAGC 1707
||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1524 TTTGTATGAGGTCCGAATAAGATATTAAGATGACATGATTAGTTTGCAGACTCCAGAAGC 1583
Query 1708 AAAAATACTCCTGTTTGTATGTGAACACAATAAAGCCTCTGTTATGAGACTTACA 1762
||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1584 AAAAAAACTCTTCTTTGTATGTGAACACAATAAAGCCTCTGTTATGAGGCTTACA 1638
Score = 202 bits (109), Expect = 8e-51
Identities = 236/289 (82%), Gaps = 42/289 (15%)
Strand=Plus/Plus
Query 49 ctctctctctcagtcttctgggtttttccta-tt-cc--tctttctctctctctccttcA 104
||||||||||||||||||||||||||||| | || || ||| |||||||||||||||||
Sbjct 31 CTCTCTCTCTCAGTCTTCTGGGTTTTTCCAATTTCCCTTTCTCTCTCTCTCTCTCCTTCA 90
Query 105 AGTTGCTGCAATCCCTTGAAAACCCAATAAACCCCCAATTTTCCA-TTTCTCATAAAGTT 163
||||||||||||||| | | | |||||||||| ||| | ||||| ||||||||
Sbjct 91 AGTTGCTGCAATCCC-T----A---GA-AAACCCCCAA-TTT-GATTTTCTTATAAAGTT 139
Query 164 CACATTTTTCCTTCTTCTTCTTCTGCCAATTCTCTGATTCCCTCGTTTCAATCTCCGTTT 223
|||| || || |||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 140 CACA---TT--TT-TTCTTCTTCTGCCAATCCTCTTTTTCCCTCGTTTCAATCTCCGTTT 193
Query 224 TGC-TTTGCCTATCAGATAAATTTCTTCTTGCTTTCCTTTCTATCTCATAACGATAAGTT 282
||| |||| ||||||||| | ||||||||||||||||||||||
Sbjct 194 TGCTTTTGGCTATCAGAT--A-----------------TTCTATCTCATAACGATAAGTT 234
Query 283 GAATTAATCTTTGCGTCTTAGTTCATCAGTAGAGAGAGTAGGGTTTTTT 331
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TAATTCATCTTTGCGTCTTAGTTCATCAGTAGAGAGAGTAGGGTTTTTT 283
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 TTCCCCTTCCTTTAACAATGGCGTTTTGACC 31
|||||||||||||||||||||||||||||||
Sbjct 1 TTCCCCTTCCTTTAACAATGGCGTTTTGACC 31
> Ahg894246 jgi|Araly1|894246|Al_scaffold_0006_2242
Length=984
Score = 159 bits (86), Expect = 5e-38
Identities = 364/493 (74%), Gaps = 39/493 (8%)
Strand=Plus/Plus
Query 640 AGTGATGGTTC-TGTGTGGAGTAGGGAGGATGATATTGCCTTT-GAGAGAGCTCTAGCCA 697
|||| |||||| | | |||| | ||| |||||||||| |||| |||||||| || | ||
Sbjct 22 AGTGTTGGTTCATCT-TGGAACAAGGATGATGATATTG-CTTTCGAGAGAGCCCTTG-CA 78
Query 698 A-TAATACCGATGAATCAGAGGA-ACGGTGGGAGAAGATTGCTGCAGACGTTCCAGGCAA 755
| | ||| |||| || |||| || || ||| | || ||||| ||| ||||| || ||
Sbjct 79 ATTTATAACGATAAAACAGA-GATTCGTTGGAAAAAAATTGCAACAGTTGTTCCTGGAAA 137
Query 756 AAGTGTT-GAAC-AGATTAAAGAACATTACGAGCTTTTAG-TTGAAGATGTTACTAG--G 810
|| | || |||| || ||| ||| |||||| | |||||| | | ||||||| | | |
Sbjct 138 AACT-TTAGAACAAG-TTATAGAGCATTACAATATTTTAGCTCG-TGATGTTA-T-GTTG 192
Query 811 ATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTGAAGGATCGAAT--GGCC 868
|||||||| |||||| | |||||||||| |||| | | | |||| | | ||| ||
Sbjct 193 ATTGAATCTGGATGTATACCTCTTCCTGATTATGAATTTTCAGAAGAACCAAATCAGG-- 250
Query 869 ATGCTGGTGATGAAG-GAGCAAGTAGTA-AGAAAGGAGGTAACAGTCATGCGGGAGAGTC 926
||||| ||||| ||| || ||| | || | |||| || |||| || | | ||||
Sbjct 251 ATGCTAGTGATAAAGAAAG-AAGCA-TATTGGAAGGTGGCAACAATCGTAAATGCGAGTT 308
Query 927 TAA-C-CAAGCAGGTAAATC-AAAGTCCGATCAAGAACGACGAAAGGGTA-TCGCGTGGA 982
||| | ||| ||||||||| ||| | | ||| ||||||||||||| | || | ||||
Sbjct 309 TAAGCACAA--AGGTAAATCAAAACT-AAAGCAAAAACGACGAAAGGGGATTC-CTTGGA 364
Query 983 C-AGAAGATGAGCACAGGTTATTTCTT-CTTGGTTTGGATAAGTACGGGAAAGGTGATTG 1040
| || ||| ||||| |||| || ||||||||| | || || ||||||||||||||
Sbjct 365 CTTCAA-TTGAACACAGACAATTT-TTGCTTGGTTTGAAAAAATATGGGAAAGGTGATTG 422
Query 1041 GCGTAGCATTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTTGCGAGCCATGC 1100
|||||||||||||||| ||| || || ||||||||| | || || ||||| || |||||
Sbjct 423 GCGTAGCATTTCTCGCCACTGCGTGGTGACAAGAACATCAACTCAGGTTGCAAGTCATGC 482
Query 1101 TCAAAAGTA-TTT 1112
|||||| || |||
Sbjct 483 TCAAAAATACTTT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5