BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08535.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712 715 0.0
Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1 407 7e-113
> Ahg350119 jgi|Araly1|350119|fgenesh1_pg.C_scaffold_6000712
Length=426
Score = 715 bits (387), Expect = 0.0
Identities = 413/426 (97%), Gaps = 0/426 (0%)
Strand=Plus/Plus
Query 247 ATGGGAGATTCCTCGGTTTCGACAAGTTCATGGGCTGTCATTGAATCTGCTAATAGGTTT 306
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGGAGATTCCTCGGTTTCGACAAGTTCATGGGCTGCCATTGACTCTGCTAATAGGTTT 60
Query 307 CAGGTGTCGAGCGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAAT 366
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGTGTCGAACGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAAT 120
Query 367 TCGTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTT 180
Query 427 GGAATCGCTGAACAGGGTATATTGGTGCCTCTACAAGCAGAGCCAAAACATAACAAACGA 486
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 181 GGAATCACTGAACAGGGTATATTGGTGCCTGTACAGGCAGAGCCAAAACATAACAAACGA 240
Query 487 GGAGTGGGAGCTAAACAACCAGCTAAGAGAAAAGTGGCTCAGCCTCAGGCTAAGGATGAA 546
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 241 GGACTGGGAGCTAAACAACCAGCTAAGAGAAAACCGGCACAGCCTCAGGCTAAGGATGAA 300
Query 547 GAAGTCTCAAAGCAGAGTAAGAAACTTTCGAAGAAAATGCGGAAGATGATGGAGCACGAA 606
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAAGTCTCAAAGCAGAGCAAGAAACTTTCAAAGAAAATGCGGAAGATGATGGAGCACGAA 360
Query 607 AAACATTTACAGGAAAAAGAATTTGAACGAGCCTTCTTTAGGGAGTTCTGGCCCGATAAT 666
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AAACATTTACAGGAAAAAGAATTTGAACGAGCCTTCTGTAGGGAGTTCTGGCCCGATAAT 420
Query 667 GTATAA 672
||||||
Sbjct 421 GTATAA 426
> Ahg485602 jgi|Araly1|485602|fgenesh2_kg.5__1594__AT3G52350.1
Length=555
Score = 407 bits (220), Expect = 7e-113
Identities = 320/368 (87%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 310 GTGTCGAGCGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTCG 369
||||| || ||||| ||||| || |||| |||||||| ||||||||||||||| |||||
Sbjct 190 GTGTCCAGTGTTATTGGTGATTCTTCTGAATCAAGCAATTCATTGGCTGCTATCAATTCT 249
Query 370 TCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGGA 429
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 TCTAACATTGGATTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGTACTGGTCTTGGA 309
Query 430 ATCGCTGAACAGGGTATATTGGTGCCTCTACAAGCAGAGCCAAAACATAACAAACGAGGA 489
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 310 ATCGCTGAACAAGGTATATTGGAGCCTCTACAAGCAGAGCCAAAACATAACAAACAAGGA 369
Query 490 GTGGGAGCT-AAACAACCAGCTAAGAGAAAAGTGGCTCAGCCTCAGGCTA-AGGAT--GA 545
| ||| || ||| |||||||||||||||||| ||| ||| |||||| || | | ||
Sbjct 370 CTAGGATCTGAAA-AACCAGCTAAGAGAAAAGCGGCACAGACTCAGGATACATCTTCTGA 428
Query 546 AGAAGTCTCAAAGCAGAGTAAGAAACTTTCGAAGAAAATGCGGAAGATGATGGAGCACGA 605
|||||| |||||| |||| ||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 429 AGAAGTATCAAAGAAGAGCAAGAAACTTTCTAAGAAATTGCGGAAGATGATTGAGCACGA 488
Query 606 AAAACATTTA-CAGGAAAAAGAATTTGAACGAGCCTTCTTTAGGGAGTTCTGGCCCGATA 664
||||| ||| | | |||| ||||| |||||||||||| |||||||||||||| ||||
Sbjct 489 AAAACGCTTAGCTG-AAAACGAATTAGAACGAGCCTTCCGCAGGGAGTTCTGGCCTGATA 547
Query 665 ATGTATAA 672
|| |||||
Sbjct 548 ATATATAA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5