BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08540.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487695 jgi|Araly1|487695|fgenesh2_kg.6__829__AT5G08540.1 2134 0.0
Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1 111 1e-23
> Ahg487695 jgi|Araly1|487695|fgenesh2_kg.6__829__AT5G08540.1
Length=1423
Score = 2134 bits (1155), Expect = 0.0
Identities = 1350/1441 (94%), Gaps = 26/1441 (2%)
Strand=Plus/Plus
Query 1 CTTCACCTTCCGTCGTAGTTCCCCGACAAGCTAACTACTGTTGAGCCCCGCCGCATCCGA 60
||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||
Sbjct 1 CTTCACCTTCCGTCGTAGTTCCCCGACTAGCTAAGTACTGTAGAGCTCCGCCGCATCCGA 60
Query 61 AGCCGACTTTTCAAATCGTCGAGCTTCAACAATGACGTCTCTTCTCCTTCCTTCATCTCA 120
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AGCCGTCTTTTCAAATCGTCGAGCTTCAACAATGACGTCTCTTCTCCTACCTTCATCTCA 120
Query 121 ATTTCTCCAGACTCGAACCCAAAACAATGGCCAACCATTCCTTCTCCCTCTAACACCACT 180
||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 121 ATTTCTCCAGACTCGTAGCCAAAACAATGGCCAACCATTGCTTCTCCCTCGAACACCACT 180
Query 181 GTTCGCAC-CACTACCTTCTCTCCGTCAGTTGAGACCGAAACACATCTCTATTTCCGCCG 239
|||| | |||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 TTTCG-TCTCACTTCCTTCTCTCCGTCAGCTGAGACCGAAACACCTCTCTATTTCCGCCG 239
Query 240 CAGCGCCGAAGAAAA-AATCGGAGACTGTCACGGCGCCGACACCGGCAGCGAAGAAGAAT 298
|||| ||||| |||| ||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 240 CAGCTCCGAA-AAAACAATCGGAGACTGTCACGGCGCCGACGCCGACGGCGAAGAAGAAT 298
Query 299 TCGAGCGTGGAGGAGGAAACAGAAGAGGAAGTAGAGGAAGATATGCCGTGGATTCAAGAG 358
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 299 TCGAGCGTGGAGGAGGAAACAGAAGAGGAAGTAGAGGAGGATATGTTGTGGATTCAAGAG 358
Query 359 AAGGCGTTAGACCTAGTCGAGTTCACTGGATCGGTGAGTCAGGCGATTCCTGGTCCTCGA 418
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 359 AAGGCGTTAGACCTAGTCGAGTTCACTGGATCGGTGACTCAGGCGATTCCAGGTCCTCGA 418
Query 419 GTTGGAAGTAGCAAATTGCCGTGGATGCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTGGAAGTAGCAAATTGCCGTGGATGCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACT 478
Query 479 TTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 TTCGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAACGCAAG 538
Query 539 AAACTGGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAAGCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 539 AAACTGGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTACGGAAAGAT 598
Query 599 GGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGACAGAGTTTAACATGGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGACAGAGTTTAACATGGAG 658
Query 659 GAGATATTGCGGAAATACATTCGTTATGCGTTGAATGAGAAACCGTTTAATCCCGACCTT 718
||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 659 GAGATATTGAGGAAATATATTCGGTATGCGTTGAATGAGAAGCCGTTTAATCCTGACCTT 718
Query 719 GTTGCTGATCTCATTCATCTAAGAAAAGCTTCTGGTTTGAATGATTCTCAGATTCCTGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTGCTGATCTCATTCATCTAAGAAAAGCTTCTGGTTTGAATGATTCTCAGATTCCTGAG 778
Query 779 ATTTTAAATGAGATCTCTCGTCGTATTGTCAAGGAAAAAGGTCCGGTAGTGATGAAAATG 838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 ATTTTAAATGAGATCTCTCGTCGTATTGTCAAAGAAAAAGGTCCGGTAGTGATGAAAATG 838
Query 839 CAAGGCTTTACCGAAAAAGGATTCAAGAGAAAACTCGCCGTGCAAGCGCTTTTTGGAAAG 898
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 CAAGGGTTTACAGAAAAAGGATTCAAGAGAAAACTCGCCGTGCAGGCGCTTTTTGGAAAG 898
Query 899 ATTTACTATCTTTCTGAGCTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAG 958
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTTACTATCTCTCTGAGCTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAG 958
Query 959 GAAATATTCGGCGTTACAGATGAAGACGCAGAGAAGCTGCGGATACACGCTCTTGCTGAA 1018
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 959 GAAATATTCGGAGTTACAGACGAAGACGCAGAGAAGCTGCGGATACACGCCCTTGCTGAA 1018
Query 1019 GCTGGAGACATAGAGGCACTTGAGAAAATGGTGGAATTTGAGAAAACTGCGGAGTCTTCT 1078
|||||||| |||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 1019 GCTGGAGATATAGAGGCACTTGAGAAAATGGTGGAATTTGAGAAAACAGCCGAGACTTCT 1078
Query 1079 TCGGATAAAGAAGAAGATTCAAATGAAGAAGATGACTCTAACACCACTTCCTAAGATGTT 1138
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 TCGGATAAAGAAGAAGATTCAAATGAAGAAGATGATTCTAACACCACTTCCTAAGATGTT 1138
Query 1139 TGTTCAACGACCAACTTTCAACAGTAGATTCTTTCCAAAGGGGGTTTTCTTCTTCTGTTC 1198
|||||||||||||||||| | | | | |||||||| |||||||||||||||
Sbjct 1139 TGTTCAACGACCAACTTT------T---T-C---C-AAAGGGGGGTTTCTTCTTCTGTTC 1184
Query 1199 TTTGACTTATACCCCAAGTTGTGTTGTTTACAGCAGAAGACGTCTGATTCCAACAGAAAT 1258
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1185 TTTGACTTATATCCCAAGTTGTGTTGTTTACAGCAGAATA-GTCTGATTCCAACAGAAAT 1243
Query 1259 TGTC-TTTTGCAAAAAACCATGACACAGCTCGTAATACAAATTAACTGCATCTATAGTGC 1317
|| | |||||||||||| |||||||||||| |||| | ||||| | ||||| || | |||
Sbjct 1244 TGCCCTTTTGCAAAAAAGCATGACACAGCTTGTAAGAGAAATTTATTGCATTTAAAATGC 1303
Query 1318 AGCACAGCAATACAAGTTGGGGCTTATATTCATAGAAATAATATTGTCTTTGCTAAATCT 1377
|||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1304 AGCACAACAATACAAGTTGTGGCTTATATTCATAGAAATTATTTTGTCTTTGCTAAATCT 1363
Query 1378 AAACTCATACAGATATAAAGGGAAAAATAAAA----GACT-CGAGATACTTTAGCTTATA 1432
||||||||||||||||||| ||||||| |||| |||| | |||||||||||||| ||
Sbjct 1364 AAACTCATACAGATATAAAAGGAAAAAAAAAAAAAAGACTAC-AGATACTTTAGCTTCTA 1422
Query 1433 T 1433
|
Sbjct 1423 T 1423
> Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1
Length=3044
Score = 111 bits (60), Expect = 1e-23
Identities = 85/96 (89%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 1343 ATATTCATAGAAATAATATTGTCTTTGCTAAATCTAAACTCATACAGATATAAAGGGAAA 1402
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 3044 ATATTCATAGAAATTATTTTGTCTTTGCTAAATCTAAACTCATACAGATATAAAAGGAAA 2985
Query 1403 AATAAAA----GACT-CGAGATACTTTAGCTTATAT 1433
|| |||| |||| | |||||||||||||| |||
Sbjct 2984 AAAAAAAAAAAGACTAC-AGATACTTTAGCTTCTAT 2950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5