BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08550.1
Length=3066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1 4817 0.0
Ahg350144 jgi|Araly1|350144|fgenesh1_pg.C_scaffold_6000737 1430 0.0
Ahg487695 jgi|Araly1|487695|fgenesh2_kg.6__829__AT5G08540.1 111 2e-23
> Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1
Length=3044
Score = 4817 bits (2608), Expect = 0.0
Identities = 2922/3071 (95%), Gaps = 32/3071 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGTAACCGTCCTAAGAATTTCCGGCGGCGAGGGGACGACGGCGGCGATGAAATT 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTAACCGTCCTAGGAATTTCCGGCGGCGAGGGGACGACGGCGGCGATGAAATC 60
Query 61 GACGGTAAAGTTGCTACCCCCTCGTCAAAACCGACTTCGACTCTTTCCTCCTCGAAACCT 120
||||||||||||||||||||| || |||||||||||||||||| ||| || |||||||||
Sbjct 61 GACGGTAAAGTTGCTACCCCCGCGGCAAAACCGACTTCGACTCCTTCGTCGTCGAAACCT 120
Query 121 AAAACACTCTCAGCCTCGGCCCCGAAGAAGAAACTCCTAAGTTTCGCCGACGACGAGGAG 180
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAAACACCCTCAGCCTCGGCCCCGAAGAAGAAACTTCTAAGTTTCGCCGACGACGAGGAG 180
Query 181 GAGGAAGAAGATGGAGCTCCCCGTGTGACGATAAAGCCTAAGAACGGCAGAGACCGTGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAAGAAGATGGAGCTCCCCGTGTGACGATAAAGCCTAAGAACGGCAGAGACCGTGTC 240
Query 241 AAATCCTCTTCCCGTCTCGGCGTTTCGGGATCTTCTCACAGACACTCTTCAACCAAGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATCCTCTTCCCGTCTCGGCGTTTCGGGATCTTCTCACAGACACTCTTCAACCAAGGAA 300
Query 301 CGTCGTCCCGCTTCTTCTAACGTGCTTCCTCAGGCCGGCTCTTATTCGAAAGAGGCGCTG 360
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CATCGTCCCGCTTCTTCTAACGTGCTTCCTCAGGCCGGTTCTTATTCGAAAGAGGCGCTG 360
Query 361 CTCGAGCTCCAGAAGAACACACGGACGCTTCCTTATTCTCGCTCTAGTGCCAATGCCGAG 420
|||||||||||||||||||||||||||||||| ||||||||| ||||| | ||| |||||
Sbjct 361 CTCGAGCTCCAGAAGAACACACGGACGCTTCCGTATTCTCGCCCTAGTTCAAATTCCGAG 420
Query 421 CCGAAGGTAGTGCTTAAGGGTTTAATCAAACCTCCGCAGGATCATGAGCAGCAGAGTCTG 480
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 421 CCAAAAGTAGTGCTTAAGGGTTTAATCAAACCTCCGCATGAGCATGAGCAGCAGAGTCTC 480
Query 481 AAGGATGTAGTTAAACAGGTTTCGGATTTGGACTTCGATGAGGAAGGGGAAGAAGAGCAG 540
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AAGGATGTGGTCAAACAGGTTTCGGATTTGGACTTCGATGAGGAAGGGGAAAAAGAGCAG 540
Query 541 CATGAAGATGCGTTTGCTGATCAGGCAGCGATTATTAGAGCCAAGAAAGAGAGGATGAGG 600
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTGAAGATGCTTTTGCCGATCAGGCAGCGATTATTAGAGCCAAGAAAGAGAGGATGAGG 600
Query 601 CAGTCACGTTCAGCACCGGCGCCTGATTACATATCACTAGATGGTGGTATCGTAAATCAT 660
|||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 601 CAGTCACGTTCAGCACCGGCGCCTGATTACATATCACTGGATGGTGGTACCGCAAATCAT 660
Query 661 TCTGCTGTTGAAGGAGTCAGCGACGAGGATGCGGATTTTCAGGGAATTTTCGTCGGTCCG 720
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||
Sbjct 661 TCTGCTGTTGAAGGAGTCAGCGATGAGGATGCAGATTTTCAGGGGATTTTCGTCGGTGCG 720
Query 721 AGACCTCAGAAAGATGATAAGAAAGGTGTGTTTGATTTCGGTGATGAAAATCCTACTGCT 780
||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 AGACCACACAAAGGTGATAAGAAAGGTGTGTTTGATTTCGGGGATGAAAATCCTACTGCT 780
Query 781 AAAGAAACCACGACAAGTAGTATTTATGAGGATGAGGATGAAGAAGATAAGTTGTGGGAG 840
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 781 AAAGAAACCACGACAAGTAGTTTTTATGAGGATGAGGATGAAGAAGAGAAGTTGTGGGAA 840
Query 841 GAGGAGCAATTTAAGAAGGGTATTGGTAAAAGAATGGACGAAGGGTCGCATAGGACTGTA 900
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 841 GAGGAGCAATTTAAGAAGGGTATTGGTAAAAGAATGGATGAAGGGTCTCATAGGACTGTA 900
Query 901 ACTAGTAATGGGATTGGCGTGCCTTTGCATTCTAAACAGCAGACACTGCCACAACAGCAA 960
||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 901 ACTAGTAATGGGATTGGCGTGCCTTTGCATTCTAACCAGCAGTCACTACCACACCAGCAA 960
Query 961 CCGCAGATGTATGCTTATCATGCCGGGACACCAATGCCGAATGTTTCTGTCGCTCCTACC 1020
|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 961 CCGCAGATGTATACTTATCATGCCGGGACACCAATGCCGAATATTTCTGTTGCTCCTACC 1020
Query 1021 ATTGGCCCAGCTACTAGTGTTGATACATTACCAATGTCACAACAAGCCG-AGCTTGCCAA 1079
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1021 ATTGGTCCAGCTACTAGTGTTGATACATTACCAATGTCACAACAAGCCGCA-CTTGCCAA 1079
Query 1080 GAAGGCATTGAAAGACAATGTTAAGAAGCTTAAGGAATCTCATGCAAAAACGTTATCCTC 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGGCATTGCAAGACAATGTTAAGAAGCTTAAGGAATCTCATGCAAAAACGTTATCCTC 1139
Query 1140 CCTTACCAAGACAGATGAGAATCTGACTGCGTCGTTGATGAGTATCACAGCTCTTGAAAG 1199
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1140 CCTTACCAAGACAGATGAGAATTTGACTGCTTCGTTGATGAGTATCACAGCTCTTGAAAG 1199
Query 1200 TTCGCTATCTGCAGCTGGAGATAAGTATGTGTTCATGCAAAAACTCAGAGACTTCATTTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCGCTATCTGCAGCTGGAGATAAGTATGTGTTCATGCAAAAACTCAGAGACTTCATTTC 1259
Query 1260 TGTTATCTGTGACTTCATGCAGAATAAGGGTTCATTAATTGAAGAAATTGAAGATCAAAT 1319
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1260 TGTTATCTGCGACTTCATGCAGAACAAGGGTTCCTTAATTGAAGAAATTGAAGATCAGAT 1319
Query 1320 GAAGGAACTTAACGAAAAACATGCTTTATCTATTCTAGAAAGGAGAATTGCAGATAACAA 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 GAAGGAACTTAACGAAAAACATGCTTTATCTATTCTGGAAAGGAGAATTGCAGATAACAA 1379
Query 1380 TGATGAAATGATAGAGTTGGGGGCCGCAGTGAAAGCAGCAATGACAGTTCTAAACAAACA 1439
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 TGATGAAATGTTAGAGTTGGGGGCCGCTGTGAAAGCAGCAATGACAGTTCTAAACAAACA 1439
Query 1440 TGGAAGCAGTAGTTCAGTGATTGCTGCTGCCACAGGTGCTGCGTTGGCTGCCTCTACTTC 1499
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1440 AGGAAGCAGTACTTCAGTGATTGCTGCTGCCACAAGTGCTGCGTTGGCTGCCTCTGCTTC 1499
Query 1500 TATAAGGCAGCAGATGAATCAACCAGTTAAGCTTGATGAATTTGGCAGAGACGAAAATCT 1559
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TATAAGACAGCAGATGAATCAACCAGTTAAGCTTGATGAATTTGGCAGAGACGAAAATCT 1559
Query 1560 GCAGAAGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCAGAAGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATT 1619
Query 1620 TGAAAATAAGCGTGCATCAGCTATGGAGGTTGATGGACCTTCTCTGAAAATAGAAGGAGA 1679
|||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||||||||
Sbjct 1620 TGAAAACAAGCGTGCATCAGCCATGGAGATTGAAGGATCTTCTCTGAAAATAGAAGGAGA 1679
Query 1680 ATCAAGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATCAAGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTT 1739
Query 1740 ACTTCAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAA 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACTTCAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAG 1799
Query 1800 GGTGAAGGCGAGATTTGAGAGGTGGAAGCGAGACTATTCATCAACTTATCGTGATGCTTA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1800 GGTGAAGGCGAGATTTGAGAGGTGGAAGCGAGACTATTCATCAACTTATCGGGATGCTTA 1859
Query 1860 CATGTCTTTGACCGTTCCTTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATG 1919
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CATGTCTTTGACCGTTCCCTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATG 1919
Query 1920 GGATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGGTTGCTTTTTGA 1979
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1920 GGATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGATTGCTATTTGA 1979
Query 1980 TTACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAGATGATACTGATGCCAACCTTGT 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 TTACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAGATGATACTGATGCCAACCTTGT 2039
Query 2040 CCCTGAGCTAGTAGAAAAGGTTGCAATTCCAATTTTGCACCATCAGATAGTTCGTTGCTG 2099
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2040 CCCTGAGCTAGTAGAAAAGGTTGCGATTCCCATTTTGCACCATCAGATAGTTCGTTGCTG 2099
Query 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
Query 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAACTATTTGCTGCTATTCGTGCTCGCCT 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAACTATTTGCTGCTATTCGTGCTCGCCT 2219
Query 2220 TGTTGAAGCCATTGCAGCTATTAGTGTTCCGACATGGGATCCTCTGGTATTGAAGGCTGT 2279
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 2220 TGTTGAAGCCATTGCAGCTGTTAGCGTTCCGACATGGGATCCGCTGGTATTGAAGGCTGT 2279
Query 2280 ACCTAATACTCCACAAGTTGCCGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAAA 2339
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2280 ACCTAATGCTCCACAAGTTGCAGCATATAGATTTGGGACATCAGTCCGTCTTATGAGAAA 2339
Query 2340 TATATGTATGTGGAAAGACATCCTGGCGCT-TCCAGTGTTGGAGAACTTGGCTCTTAGTG 2398
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 2340 TATATGTATGTGGAAAGACATTCTGGCGCTCTC-AGTGTTGGAGAACTTGGCTCTTAGTG 2398
Query 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCAAATATCCATGATG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCAAATATCCATGATG 2458
Query 2459 CTGTGACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTGTGGACAGGACCAAGCG 2518
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2459 CTGTGACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTATGGACAGGACCAAGCG 2518
Query 2519 TCACACGAACCCACAGTCGTCCGCTGCAACCTCTTGTGGATTGTACTCTGACACTTAGAA 2578
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2519 TCACAAGAACCCACAGTCGTCCACTGCAACCTCTTGTGGATTGTACTCTGACACTCAGAA 2578
Query 2579 GAATTCTCGAGAAAAGGCTTGGCTCAGGACTGGACGATGCGGAAACCACTGGTCTCGCCC 2638
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 2579 GAATTCTCGAGAAAAGGCTTGCCTCAGGACTGGACGATGCAGAAACCACTGGTCTCGCCC 2638
Query 2639 GCAGATTAAAGAGAATACTAGTCGAGCTCCATGAACATGACCACGCCAGGGAAATTGTCA 2698
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2639 GCAGGTTAAAGAGAATACTAGTAGAGCTCCATGAACATGACCATGCCAGGGAAATTGTCA 2698
Query 2699 GAACATTCAATCTTAAGGAGGCAGTTT-GACCAAAAGTTTATTGATGGGAAACTGGAAAG 2757
||||||||||||| |||||||| |||| | |||| |||||||||||||||||||||||
Sbjct 2699 GAACATTCAATCTCAAGGAGGCCGTTTAGTG-AAAATTTTATTGATGGGAAACTGGAAAG 2757
Query 2758 TCAACACAGAAATCTTTAGCCTCAGGTTATCAGGCT-CACCTTTCGGGCTGTACCAGCAA 2816
||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||| |
Sbjct 2758 TCAACTCAGAAATCTTTAGCCTCAGGTTATCAGT-TACACCTTTCGGACTGTACCAGCTA 2816
Query 2817 AGGCTCATCGATTTCAACATCGAGGATTACAAGATTTTCCCTAGGATTATTAGGCTAGCA 2876
|| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2817 AGCCTCATCGACTTCAACATCGAAGATTACAACATTTTCCCTAGGATTATTAGGCTAGCA 2876
Query 2877 CCAAAACCTTCCGGAATCCATTTTCAGACACAGAAGAGTTTTAGTACTTTGGCTTAATGT 2936
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2877 CCAAAAGCTTCCGGAATCCATTTTCAGACACAGAAGAGTTTTAGTACTTTGGCTTAATGT 2936
Query 2937 AAGTGTAACCTCTTGTGGTTGTAGAAAACCTTATAA-TAAATATAAGCTAAAGTATCTCG 2995
||||||||||||| | |||| | | | || || | | | || || | |
Sbjct 2937 AAGTGTAACCTCTA-T------AGAAG-C-T-A-AAGTA--TCT--G-TA--GTCTTTT- 2977
Query 2996 AGTCTTTTATTTTTCCCTTTATATCTGTATGAGTTTAGATTTAGCAAAGACAATATTATT 3055
| |||| ||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 2978 --T-TTTT-TTTTTCCTTTTATATCTGTATGAGTTTAGATTTAGCAAAGACAAAATAATT 3033
Query 3056 TCTATGAATAT 3066
|||||||||||
Sbjct 3034 TCTATGAATAT 3044
> Ahg350144 jgi|Araly1|350144|fgenesh1_pg.C_scaffold_6000737
Length=1698
Score = 1430 bits (774), Expect = 0.0
Identities = 1047/1175 (89%), Gaps = 33/1175 (3%)
Strand=Plus/Plus
Query 1565 AGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATTTGAAA 1624
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 533 AGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCCGCAGAAAAGGCGAGCTCGATTTGAAA 592
Query 1625 ATAAGCGTGCATCAG-CTATGGAGGTTGATGGACCTTCTCTGAAAATAGAAGGAGAATCA 1683
| ||||||||||||| | | |||||||||||| ||| |||| |||||||||||| |||
Sbjct 593 ACAAGCGTGCATCAGCCGA-AGAGGTTGATGGATATTCCCTGATAATAGAAGGAGACTCA 651
Query 1684 AGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTTACTT 1743
||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 652 AGCACCGATGAGAGTGACAGTGAGACTTCAGCTTATAAGGAGACACGAGATCGCTTACTT 711
Query 1744 CAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAAGGTG 1803
||| |||| ||||| || |||||| |||||||| || ||||||||||||||||| ||||
Sbjct 712 CAGCGTGCCGATAAAATCCTTAGTGTTGCATCTGTGGTGTACTCCCAGCTTTCAAGGGTG 771
Query 1804 AAGGCGAGATTTGAGAGGTG-GAAGCGAGACTATTCATCAACTTATCGTGA-TGCTTACA 1861
||| ||| |||| ||||||| | |||||||||| |||| ||| ||| || ||||||||
Sbjct 772 AAGACGATATTTAAGAGGTGTG-CGCGAGACTATCCATCTGCTTGTCG-GAGTGCTTACA 829
Query 1862 TGTCTTTGACCGTTCCTTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATGGG 1921
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 830 AGTCTTTGACCGTTCCTTCCATCTATTCACCTTATGTAAGACTGGAGCTTTTGAGATGGG 889
Query 1922 ATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGGTTGCTTTTTGATT 1981
|||||||||||||| |||||||||||| ||||||||| |||||||| |||| |||||||
Sbjct 890 ATCCTCTTCATCAACATGTGGATTTCTCTGACATGAACTGGCATGGACTGCTGTTTGATT 949
Query 1982 ACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAG-ATGATACTGATGCC-AACCTTGT 2039
| | || | |||| ||| ||||||||||| || ||||||| || ||| ||||
Sbjct 950 -----ATG--AG-A-TTGGGAATGGTTTTGCACCAGTTTG-TACTGAT-CCTAACTTTGT 998
Query 2040 CCCTGAGCTAGTAGAAAAGGTTGCAATTCCAATTTTGCACCATCAGATAGTTCGTTGCTG 2099
|||||||||| ||| | ||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 999 ATCTGAGCTAGTGGAATACGTTGCGATTCCCATTTTGCACCATCGGATAGTTCGTTGCTG 1058
Query 2100 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1059 GGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGGCAAG 1118
Query 2160 TTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAA-CTATTTGCTGCTATTCGTGCTCGCC 2218
|||||||| | |||||||| ||||| |||| ||| |||| || |||| ||||||||||||
Sbjct 1119 TTATGTTTATTCTTCGAGTAAGGCCCTAGC-GAAACTATCTGTTGCTCTTCGTGCTCGCC 1177
Query 2219 TTGTTGAAGCCATTGCAGCTATTAGTGTTCCGACATGGGATCCTCTGGTATTGAAGGCTG 2278
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1178 TTGTTGAAGCCATTACAGCTATTAGTGTTCCGACATGGGATCCTCAGGTATCAAAGGCTG 1237
Query 2279 TACCTAATACTCCACAAGTTGCCGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAA 2338
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1238 TACCTAATGCTCCACAAGTTGCAGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAA 1297
Query 2339 ATATATGTATGTGGAAAGACATCCTGGCGCTTCCAGTGTTGGAGAACTTGGCTCTTAGTG 2398
|||||||||||||||||||||| ||| |||||| ||||||||||| |||||||| ||||
Sbjct 1298 ATATATGTATGTGGAAAGACATGATGGAGCTTCCGGTGTTGGAGAAGTTGGCTCTGAGTG 1357
Query 2399 ACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCA-AAT-A--TC--C 2452
|||||||||||||||||||| |||| ||||||||||||||||||||| ||| | | |
Sbjct 1358 ACCTTTTGTTTGGAAAAGTTTTACCTCATGTCAGAAGCATTGCATCAGAATCAAATATGC 1417
Query 2453 ATGATGCTGTGACAAGAACTGAAA-GAATCGTTGCTTCTTTGTCTGGAGTGTGGACAGGA 2511
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 1418 ATGATGCTGTGACAAGAACTGAAATGA-TCGTTGCTTCTTTGTCTGGAGTATGGACTGGA 1476
Query 2512 CCAAGCGTCACACGAACCCACAGTCGTCCGCTGCAACCTCTTGTGGATTGTACTCTGACA 2571
||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1477 CCAAGTGTCACAAGAACCCACAGTCGTCTGCTGCAACCCCTTGTGGATTGTACTCTGACA 1536
Query 2572 CTTAGAAGAATTCTCGAGAAAAGGCTTGGCTCAGGACTGGACGATGCGGAAACCACTGGT 2631
||| ||||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||||
Sbjct 1537 CTTGGAAGAATACTCGAGAAAAGGCTTGCCTCGGGACTGGTCGATACGGAAACCACTGGT 1596
Query 2632 CTCGCCCGCAGATTAAAGAGAATACTAGTCGAGCTCCATGAACATG-ACCACGCCAGGGA 2690
||||||| ||| ||||||| |||||| ||||||||||||||||||| || ||||| ||||
Sbjct 1597 CTCGCCCCCAGGTTAAAGAAAATACTTGTCGAGCTCCATGAACATGGAC-ACGCC-GGGA 1654
Query 2691 AA-TTGTCAGAACATTCAATCTTAAGGAGGCAGTT 2724
|| |||||||| |||||||||| ||||||||||||
Sbjct 1655 AAATTGTCAGAGCATTCAATCTCAAGGAGGCAGTT 1689
> Ahg487695 jgi|Araly1|487695|fgenesh2_kg.6__829__AT5G08540.1
Length=1423
Score = 111 bits (60), Expect = 2e-23
Identities = 85/96 (89%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 2976 ATATAAGCTAAAGTATCTCG-AGTC----TTTTATTTTTCCCTTTATATCTGTATGAGTT 3030
||| |||||||||||||| | |||| |||| ||||||| ||||||||||||||||||
Sbjct 1423 ATAGAAGCTAAAGTATCT-GTAGTCTTTTTTTTTTTTTTCCTTTTATATCTGTATGAGTT 1365
Query 3031 TAGATTTAGCAAAGACAATATTATTTCTATGAATAT 3066
|||||||||||||||||| || ||||||||||||||
Sbjct 1364 TAGATTTAGCAAAGACAAAATAATTTCTATGAATAT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115794344800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5