BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08560.1 Length=2299 Score E Sequences producing significant alignments: (Bits) Value Ahg487697 jgi|Araly1|487697|fgenesh2_kg.6__831__AT5G08560.1 3469 0.0 Ahg951174 jgi|Araly1|951174|scaffold_803061.1 555 7e-157 > Ahg487697 jgi|Araly1|487697|fgenesh2_kg.6__831__AT5G08560.1 Length=2264 Score = 3469 bits (1878), Expect = 0.0 Identities = 2086/2184 (96%), Gaps = 23/2184 (1%) Strand=Plus/Plus Query 131 tctATCATCTCCTCACCGCTTCCTAAATCTCTATAGCGGTCTTCCTTCCCTCCTTTGTTT 190 |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 89 TCTATCATCTTCTCACCGCTTCCTAAATCTCTCTAGCGGTCTTCCTTCCCCCCTTTGTTT 148 Query 191 CCGGGCTGTTCCTTAATCACTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 250 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 149 CCGGGCTGTTCCTTAATCCCTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 208 Query 251 GGGTTTTGCTTCTTATTTGA-AGATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 309 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 209 GGGTTTTGCTTCTTATTTGATA-ATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 267 Query 310 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGAGGCTTGCTGACGAACCGAACGGCT 369 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 268 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGCGGCTTACTGACGAACCGAACGGCT 327 Query 370 TCTCCGCGAACTCGTCTGTTAGAGGTAGTAGTGTGAACAGCAACTCTTTGGGAGACCTGA 429 ||||||||||||| ||| ||||||||||||||||| | | |||||||||||||||||||| Sbjct 328 TCTCCGCGAACTCCTCTCTTAGAGGTAGTAGTGTG-A-A-CAACTCTTTGGGAGACCTGA 384 Query 430 TGGCAAGGCCTCTGCCCTCCCAAGGGGATGACGAAACTATCGGCTCCAAAGGGGTCATTA 489 |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 385 TGGCAAGGCCTCTGACCTCCCAAGGGGATGAGGAAACTATTGGCTCCAAAGGGGTCATTA 444 Query 490 GAAAATCTGAATTCGTTAGGATTATCACTAGGGCTCTTTATTCTCTTGGATATGATAAAA 549 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 445 AAAAATCTGAATTCATTAGGATTATCACTAGGGCTCTTTATTCGCTTGGATATGATAAAA 504 Query 550 CCGGGGCTATGTTGGAGGAAGAATCCGGTATCTCTCTGCACAATTCCACCATTAAGCTGT 609 | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 505 CTGGGGCTATGTTGGAGGAAGAATCCGGAATCTCTCTGCATAATTCCACCATTAAGCTGT 564 Query 610 TTCTGCAGCAGGTTAAGGACGGCAAATGGGATCAAAGTGTTAAAACATTGCACAGAATCG 669 ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| Sbjct 565 TTCTGCAGCAGGTTACGGACGGAAAATGGGATCAAAGTGTTAAAACACTGCACAGAATCG 624 Query 670 GTTTCCCTGATGAGAAGGCTGTCAAGGCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 729 || | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 625 GTCTGCCTGATGAAAAGGCTGTCAAATCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 684 Query 730 TGGAGTTTCTCAAAGTTGAAAAGATAGCTGATGCGCTACGCACCTTAAGGAATGAGATGG 789 ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 685 TGGAGCTTCTCAAAGTTGAAAACATAGCTGATGCGCTAGGCACCTTAAGGAATGAGATGG 744 Query 790 CGCCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 849 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 CACCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 804 Query 850 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 864 Query 910 AGGTTTTGGAGGAACTGCAAACCTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 969 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 865 AGGTTCTGGAGGAACTGCAAAACTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 924 Query 970 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 984 Query 1030 CTTTGGATAGTGATTTGTCTTTGTATTCTGATCATCAATGCGGGAAGCACCAAATTCCTT 1089 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 985 CTTTGGATAGTGATTTGTCTTTGTACTCTGATCATCAATGCGGGCAGCACCAAATTCCTT 1044 Query 1090 CTCAGACTGC-TCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTTTCA 1148 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1045 CTCAGACT-CTTCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTCTCA 1103 Query 1149 CATAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1208 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 CACAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1163 Query 1209 AGCGCAGATGGGCACATTTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGTGATT 1268 |||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1164 AGCGTAGATGGGCACACTTCATTGAAGCATACACTTGTGGGCCACCAGAAACCCGTGATT 1223 Query 1269 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1283 Query 1329 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1343 Query 1389 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGGATAATCGCCGGGATGACAGACCGA 1448 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1344 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGAATAATCGCGGGGATGACAGACCGA 1403 Query 1449 AGCATCTGCATGTGGGATTTAGATGGTAGAGAGAAGGAATGCTGGAAAGGTCAGAGGACT 1508 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1404 AGCATTTGCATGTGGGATTTAGATGGTAGAGAGTTGGAATGCTGGAAAGGTCAGAGGACT 1463 Query 1509 CAAAAGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCAAA 1568 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1464 CAAAAGGTATCAGATATAGCAATGACAGATGATGGAAAGTGGCTCGTAAGTGTATGCAAG 1523 Query 1569 GATTCCGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGATTAATAGAAGAGGAA 1628 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1524 GATTCCGTGATATCTCTATTTGATAGAGAAGCTACAGTTGAGAGATTAATTGAAGAGGAA 1583 Query 1629 GACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTC 1688 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1584 GAAATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATTCTGGTAAACCTCCTC 1643 Query 1689 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCGAGATACAAA 1748 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1644 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCAAGATACAAA 1703 Query 1749 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1763 Query 1809 ATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGGCACAGATCTACAGGGAAGTTA 1868 ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 1764 GTCGCTAGCGGAAGCGAGGATTCCCAGGTATACATATGGCACAGATCTACAGGGAAGTTA 1823 Query 1869 ATAGTTGAGCTACCAGGCCATGCAGGAGCAGTTAACTGCGTGAGCTGGAGCCCGACGAAT 1928 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1824 ATCGTTGAGCTACCAGGCCATGCAGGAGCAGTCAACTGCGTGAGCTGGAGCCCGACGAAC 1883 Query 1929 CTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGATATGGGGACTTGACCGG 1988 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1884 CTACACATGTTGGCTTCAGCAAGCGATGACGGAACCATAAGGATATGGGGACTTGACCGG 1943 Query 1989 ATTAACCAACAAAACCAGAAGAAGAAGCTAGTGCAAGGAAGTAGCAGTAATGGTGTGATT 2048 ||||||||||| |||||||||||| | | |||||||||||||||||||| ||||||||| Sbjct 1944 ATTAACCAACAGAACCAGAAGAAGCA--T-GTGCAAGGAAGTAGCAGTAACGGTGTGATT 2000 Query 2049 CACCGATGCAATGGGAATTGATTATGATa-aaaaaaa-aaG--GAATGACCTTC-TTAAA 2103 ||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||| Sbjct 2001 CACCGATGCAATGGGAATTGATTATGATAGAAAAAAAGAAAATGAATGACCTTCCTTAAA 2060 Query 2104 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCAGCCTCTTTTTGTTTGCTTCCTT 2163 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | Sbjct 2061 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCATCCTCTTTATGTTTGCTTCCGT 2120 Query 2164 TGGTATGGAAAGCAAACGAAAGAAGGTAAAAGCTGttt-tttt-ttttC-AAA-----TT 2215 |||||||||||||||| ||||||||| |||| |||||| |||| |||| ||| || Sbjct 2121 TGGTATGGAAAGCAAAAGAAAGAAGGCAAAATCTGTTTCTTTTCTTTTTTAAAAAAAATT 2180 Query 2216 CTGAACCCATAAGTGGAAGGAACaaaaaggaaaaagaaaaTGCAATTTGCAACATAATTC 2275 |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 2181 CTGAACCCATCAGTGGAAGGAACAAAAAGGAAAAAAAAAATGCAATTTGCAATATAATTC 2240 Query 2276 TTCTATTGATGTTACATTGTACAT 2299 ||||| |||||||||||||||||| Sbjct 2241 TTCTAATGATGTTACATTGTACAT 2264 > Ahg951174 jgi|Araly1|951174|scaffold_803061.1 Length=1586 Score = 555 bits (300), Expect = 7e-157 Identities = 1008/1332 (76%), Gaps = 120/1332 (9%) Strand=Plus/Plus Query 705 TTCTTGCTCCTAGAGCA-AAAGTTCTTGGAGTTTCTCAAAGTTG-AAAA-GATAGCTGAT 761 |||||||| |||||||| ||| ||||| ||| ||||| ||| || |||| |||| ||||| Sbjct 289 TTCTTGCTACTAGAGCACAAA-TTCTTTGAGGTTCTC-AAGATGCAAAAGGATA-CTGAT 345 Query 762 GCGCTACGC-ACCTTAAGGAATGAGATGGCGCCTCTTCGTATTAATACA-AAGCGTGTTC 819 || || || |||||||| || |||||| |||||||| || |||| | | ||||| |||| Sbjct 346 GCTCT-GGCAACCTTAAGAAAGGAGATGACGCCTCTTGGTTTTAACA-AGAAGCGCGTTC 403 Query 820 ATGAGCTCGCTTCC-TCCCTTATATCACCTTCAAGCTTTATATCACATACCACTTCGACT 878 |||||||||| ||| | | || || | || ||| | | | | | ||| Sbjct 404 ATGAGCTCGCATCCAT-AC-TA-AT-A---TC-AGC----T-T--C-T---GC--CGA-- 440 Query 879 CCAGGTAAAGAAAGTGTGAATTCAAGGTCTAAGGTTTTGGAGGA-ACTGCAAACCTTGCT 937 || ||||||||||||||||||| ||||||||||| |||| || |||||||| |||| | Sbjct 441 --AGATAAAGAAAGTGTGAATTCAGGGTCTAAGGTTGTGGA-GACACTGCAAAACTTGTT 497 Query 938 TCCTGCTTC-TGTTATAATCCCAGAAAAGAGGTTGGAGTGT-TTAGTTGAGAA-TTCACT 994 |||| || | || | |||||||||||||| ||||||| | | | | ||||| | || Sbjct 498 TCCTCCTGCAACTT-TTATCCCAGAAAAGAGATTGGAGTATCTCA-TAGAGAAGGGC-CT 554 Query 995 TCA-TATTCAGCGGGATTCT-TGTGTTTTCCATAATACTT-TGGATAGTGATTTGTCTTT 1051 | | || | || | |||| |||| | |||||||| || | || |||||||||| | Sbjct 555 TGATTA-TGAG-TTGTTTCTCTGTGAGTGCCATAATA-TTCCGAATTGTGATTTGTCCCT 611 Query 1052 GTA-TTCTGATCATCAATGCGGGAAGCACCAAATTCCTTCTCAGACTGCT-CAGATC-TT 1108 | ||||||||||| || |||| || ||||||||||| |||||| | |||| | || Sbjct 612 -AAGCTCTGATCATCATTGTGGGATCCATAAAATTCCTTCTAAGACTG-TACAGA-CTTT 668 Query 1109 GGAGTCA-CATACCGATGAAGTTTGGTTCTTGCAATTTTCACATAATGGCAAATATTTGG 1167 | || | ||||| |||||||| ||||||||| |||| |||||| ||||||| ||||||| Sbjct 669 GAAG-AACCATACGGATGAAGTCTGGTTCTTGGAATTCTCACATGATGGCAAGTATTTGG 727 Query 1168 CTTCATCTTCCAAGGATCAAA-CCGCAATTATATGGGAGATCAG-CGCAGATGGGCACAT 1225 ||||||||||||||||| ||| | |||||||||||||||||| | ||| | ||| | | Sbjct 728 CTTCATCTTCCAAGGAT-AAATCAGCAATTATATGGGAGATC-GATGCACAGGGGAAGTT 785 Query 1226 TTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGT-G-ATTGCCATCTTATGGAGT 1283 ||| |||||||| |||||| || || | || ||||| | | || | || |||||| Sbjct 786 TTCGGAGAAGCATAAACTTGTGGGACATGAGAAGCCCGTGGTAATG--GTTTTGTGGAGT 843 Query 1284 CCTGATGATCGTCAAGTTC-TTACATGTGGAGCAGAA-GAGGTTATCA-GACGCTGGGAT 1340 ||||||||| |||| || ||||||||||| | || |||||||||| || |||||||| Sbjct 844 CCTGATGATAAACAAG-TCGCTACATGTGGAG-AAAATGAGGTTATCAGGA-GCTGGGAT 900 Query 1341 GTTGATTCAGGAGACTGTGTTCACAT-GTATGAAA-AAGGCGGTATCAGTCCCATTTCTT 1398 ||||| |||||||| | | |||| || ||| |||| || ||| | || | |||||| Sbjct 901 GTTGAGTCAGGAGAATTTATTCA-ATCGTACGAAAGAA-ATGGTGTTGGTTCTGTTTCTT 958 Query 1399 GCGGATGGTATCCTGATGG-GCAGGGGATAATCGCCGGGATGACAGACCGAAGCATCTGC 1457 | ||||||| || |||||| || || ||||| || |||||||||||| ||||||||||| Sbjct 959 GTGGATGGTTTCATGATGGATCA-GGTATAATTGCTGGGATGACAGACAGAAGCATCTGC 1017 Query 1458 ATGTGGGATTTAGATGGTAGAGAGAAG-GAATGC-TG-GAAAGGT-CA-GAGGACTCAAA 1512 ||||| |||||||||| || | || | ||| || | ||||| || | ||| || | Sbjct 1018 TTGTGGAATTTAGATGG--GACTG-AGCTAGTGCATGAGCAAGGTCCACG-GGA-ACAGA 1072 Query 1513 AGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCA-AAGAT 1571 || | || ||| |||| ||||| ||||||| |||||||| ||||||| || | | | | Sbjct 1073 AGCTTTCTGATGTAGCCATGACAAATGATGGGAAGTGGCTTGTAAGTG--TGGACAGGGT 1130 Query 1572 TC-CGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGA-TTAATAGAAGAGGAAG 1629 | ||||| ||| | ||| |||||||| | | || || |||| | | || |||||||| Sbjct 1131 GCATGTGATCTCATTGTTTAATAGAGAAACCAGAGCTGTGAGACTGATTA-CAGAGGAAG 1189 Query 1630 ACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTCA 1689 |||||||||||||||||||||| ||||| ||||||| || | ||| | || ||| | | Sbjct 1190 ACATGATTACCTCGTTCTCGCTGTCGAAAAACAACAAGCATCTTCTGATCAATCTCATTA 1249 Query 1690 ACCAGGAA-ATCCGTCTCTGGAATATTGAAGGTGACCCC-A-AGATTGTGTCGAGATACA 1746 |||| || |||| | ||||||| |||||||| | || | | || || | || ||| | Sbjct 1250 CCCAG-AAGATCCATGTCTGGAACATTGAAGGCCAACCATATAAAT-GTTTTGA-ATATA 1306 Query 1747 AAGGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTAT-AA-ACAAGC 1804 | |||||||||||| || || |||||||| |||||||||||||| ||| || ||| || Sbjct 1307 ATGGCCACAAGCGTAGTCGGTTTATCATCAGGTCATGCTTTGGTGGCTATGAAGACA-GC 1365 Query 1805 TTTCATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGG--CA--C-A-GATCTAC 1858 || |||||| || || || || || |||||||| || |||||| || | | ||| ||| Sbjct 1366 TT-CATCGCCAGTGGGAGTGAAGATTCTCAGGTGTACATATGGATCATACGAAGAT-TAC 1423 Query 1859 AG--GGAAG-TTAATAGTTG-AGCTACCAGGCCA-TGCAGGAGCAGTTAACTGCGTGAGC 1913 || |||| || || ||| | | | ||| || | ||||||| || |||||||||||| Sbjct 1424 AGAAGGAACCTTG-TA-TTGTAT-TGCGAGGACACT-CAGGAGCTGTGAACTGCGTGAGC 1479 Query 1914 TGGAGCCCGACGAATCTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGATA 1973 |||| ||||| || || || ||||||||||||||||| || |||||||| || |||| Sbjct 1480 TGGAACCCGATTAACCTGCATATGTTGGCTTCAGCAAGTGACGATGGAACCATTCGGATT 1539 Query 1974 TGGGGACTTGAC 1985 |||||||||||| Sbjct 1540 TGGGGACTTGAC 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86579126885 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5