BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08560.1
Length=2299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487697 jgi|Araly1|487697|fgenesh2_kg.6__831__AT5G08560.1 3469 0.0
Ahg951174 jgi|Araly1|951174|scaffold_803061.1 555 7e-157
> Ahg487697 jgi|Araly1|487697|fgenesh2_kg.6__831__AT5G08560.1
Length=2264
Score = 3469 bits (1878), Expect = 0.0
Identities = 2086/2184 (96%), Gaps = 23/2184 (1%)
Strand=Plus/Plus
Query 131 tctATCATCTCCTCACCGCTTCCTAAATCTCTATAGCGGTCTTCCTTCCCTCCTTTGTTT 190
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 89 TCTATCATCTTCTCACCGCTTCCTAAATCTCTCTAGCGGTCTTCCTTCCCCCCTTTGTTT 148
Query 191 CCGGGCTGTTCCTTAATCACTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 250
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCGGGCTGTTCCTTAATCCCTATCTCTTTCTCTTTCTTCTGCCATCGCCAAACCTTATCT 208
Query 251 GGGTTTTGCTTCTTATTTGA-AGATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 309
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 209 GGGTTTTGCTTCTTATTTGATA-ATTTATATGGGCTGAACTAGGAATTTCATGGGAGTTG 267
Query 310 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGAGGCTTGCTGACGAACCGAACGGCT 369
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 268 TGGAGGATACTGAACCTCCTTTGAAACGTGCTAAGCGGCTTACTGACGAACCGAACGGCT 327
Query 370 TCTCCGCGAACTCGTCTGTTAGAGGTAGTAGTGTGAACAGCAACTCTTTGGGAGACCTGA 429
||||||||||||| ||| ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 328 TCTCCGCGAACTCCTCTCTTAGAGGTAGTAGTGTG-A-A-CAACTCTTTGGGAGACCTGA 384
Query 430 TGGCAAGGCCTCTGCCCTCCCAAGGGGATGACGAAACTATCGGCTCCAAAGGGGTCATTA 489
|||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 385 TGGCAAGGCCTCTGACCTCCCAAGGGGATGAGGAAACTATTGGCTCCAAAGGGGTCATTA 444
Query 490 GAAAATCTGAATTCGTTAGGATTATCACTAGGGCTCTTTATTCTCTTGGATATGATAAAA 549
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 445 AAAAATCTGAATTCATTAGGATTATCACTAGGGCTCTTTATTCGCTTGGATATGATAAAA 504
Query 550 CCGGGGCTATGTTGGAGGAAGAATCCGGTATCTCTCTGCACAATTCCACCATTAAGCTGT 609
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 505 CTGGGGCTATGTTGGAGGAAGAATCCGGAATCTCTCTGCATAATTCCACCATTAAGCTGT 564
Query 610 TTCTGCAGCAGGTTAAGGACGGCAAATGGGATCAAAGTGTTAAAACATTGCACAGAATCG 669
||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 565 TTCTGCAGCAGGTTACGGACGGAAAATGGGATCAAAGTGTTAAAACACTGCACAGAATCG 624
Query 670 GTTTCCCTGATGAGAAGGCTGTCAAGGCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 729
|| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 625 GTCTGCCTGATGAAAAGGCTGTCAAATCTGCGTCTTTCTTGCTCCTAGAGCAAAAGTTCT 684
Query 730 TGGAGTTTCTCAAAGTTGAAAAGATAGCTGATGCGCTACGCACCTTAAGGAATGAGATGG 789
||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 685 TGGAGCTTCTCAAAGTTGAAAACATAGCTGATGCGCTAGGCACCTTAAGGAATGAGATGG 744
Query 790 CGCCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 849
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CACCTCTTCGTATTAATACAAAGCGTGTTCATGAGCTCGCTTCCTCCCTTATATCACCTT 804
Query 850 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CAAGCTTTATATCACATACCACTTCGACTCCAGGTAAAGAAAGTGTGAATTCAAGGTCTA 864
Query 910 AGGTTTTGGAGGAACTGCAAACCTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 969
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 865 AGGTTCTGGAGGAACTGCAAAACTTGCTTCCTGCTTCTGTTATAATCCCAGAAAAGAGGT 924
Query 970 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TGGAGTGTTTAGTTGAGAATTCACTTCATATTCAGCGGGATTCTTGTGTTTTCCATAATA 984
Query 1030 CTTTGGATAGTGATTTGTCTTTGTATTCTGATCATCAATGCGGGAAGCACCAAATTCCTT 1089
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 985 CTTTGGATAGTGATTTGTCTTTGTACTCTGATCATCAATGCGGGCAGCACCAAATTCCTT 1044
Query 1090 CTCAGACTGC-TCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTTTCA 1148
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1045 CTCAGACT-CTTCAGATCTTGGAGTCACATACCGATGAAGTTTGGTTCTTGCAATTCTCA 1103
Query 1149 CATAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1208
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CACAATGGCAAATATTTGGCTTCATCTTCCAAGGATCAAACCGCAATTATATGGGAGATC 1163
Query 1209 AGCGCAGATGGGCACATTTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGTGATT 1268
|||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1164 AGCGTAGATGGGCACACTTCATTGAAGCATACACTTGTGGGCCACCAGAAACCCGTGATT 1223
Query 1269 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GCCATCTTATGGAGTCCTGATGATCGTCAAGTTCTTACATGTGGAGCAGAAGAGGTTATC 1283
Query 1329 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AGACGCTGGGATGTTGATTCAGGAGACTGTGTTCACATGTATGAAAAAGGCGGTATCAGT 1343
Query 1389 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGGATAATCGCCGGGATGACAGACCGA 1448
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1344 CCCATTTCTTGCGGATGGTATCCTGATGGGCAGGGAATAATCGCGGGGATGACAGACCGA 1403
Query 1449 AGCATCTGCATGTGGGATTTAGATGGTAGAGAGAAGGAATGCTGGAAAGGTCAGAGGACT 1508
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1404 AGCATTTGCATGTGGGATTTAGATGGTAGAGAGTTGGAATGCTGGAAAGGTCAGAGGACT 1463
Query 1509 CAAAAGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCAAA 1568
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1464 CAAAAGGTATCAGATATAGCAATGACAGATGATGGAAAGTGGCTCGTAAGTGTATGCAAG 1523
Query 1569 GATTCCGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGATTAATAGAAGAGGAA 1628
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1524 GATTCCGTGATATCTCTATTTGATAGAGAAGCTACAGTTGAGAGATTAATTGAAGAGGAA 1583
Query 1629 GACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTC 1688
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1584 GAAATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATTCTGGTAAACCTCCTC 1643
Query 1689 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCGAGATACAAA 1748
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1644 AACCAGGAAATCCGTCTCTGGAATATTGAAGGTGACCCCAAGATTGTGTCAAGATACAAA 1703
Query 1749 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 GGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTATAAACAAGCTTTC 1763
Query 1809 ATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGGCACAGATCTACAGGGAAGTTA 1868
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1764 GTCGCTAGCGGAAGCGAGGATTCCCAGGTATACATATGGCACAGATCTACAGGGAAGTTA 1823
Query 1869 ATAGTTGAGCTACCAGGCCATGCAGGAGCAGTTAACTGCGTGAGCTGGAGCCCGACGAAT 1928
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1824 ATCGTTGAGCTACCAGGCCATGCAGGAGCAGTCAACTGCGTGAGCTGGAGCCCGACGAAC 1883
Query 1929 CTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGATATGGGGACTTGACCGG 1988
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1884 CTACACATGTTGGCTTCAGCAAGCGATGACGGAACCATAAGGATATGGGGACTTGACCGG 1943
Query 1989 ATTAACCAACAAAACCAGAAGAAGAAGCTAGTGCAAGGAAGTAGCAGTAATGGTGTGATT 2048
||||||||||| |||||||||||| | | |||||||||||||||||||| |||||||||
Sbjct 1944 ATTAACCAACAGAACCAGAAGAAGCA--T-GTGCAAGGAAGTAGCAGTAACGGTGTGATT 2000
Query 2049 CACCGATGCAATGGGAATTGATTATGATa-aaaaaaa-aaG--GAATGACCTTC-TTAAA 2103
||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||
Sbjct 2001 CACCGATGCAATGGGAATTGATTATGATAGAAAAAAAGAAAATGAATGACCTTCCTTAAA 2060
Query 2104 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCAGCCTCTTTTTGTTTGCTTCCTT 2163
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 2061 ACTATTTAACAGTTATGTTGTTTCTTCTTTCTTCATCATCCTCTTTATGTTTGCTTCCGT 2120
Query 2164 TGGTATGGAAAGCAAACGAAAGAAGGTAAAAGCTGttt-tttt-ttttC-AAA-----TT 2215
|||||||||||||||| ||||||||| |||| |||||| |||| |||| ||| ||
Sbjct 2121 TGGTATGGAAAGCAAAAGAAAGAAGGCAAAATCTGTTTCTTTTCTTTTTTAAAAAAAATT 2180
Query 2216 CTGAACCCATAAGTGGAAGGAACaaaaaggaaaaagaaaaTGCAATTTGCAACATAATTC 2275
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2181 CTGAACCCATCAGTGGAAGGAACAAAAAGGAAAAAAAAAATGCAATTTGCAATATAATTC 2240
Query 2276 TTCTATTGATGTTACATTGTACAT 2299
||||| ||||||||||||||||||
Sbjct 2241 TTCTAATGATGTTACATTGTACAT 2264
> Ahg951174 jgi|Araly1|951174|scaffold_803061.1
Length=1586
Score = 555 bits (300), Expect = 7e-157
Identities = 1008/1332 (76%), Gaps = 120/1332 (9%)
Strand=Plus/Plus
Query 705 TTCTTGCTCCTAGAGCA-AAAGTTCTTGGAGTTTCTCAAAGTTG-AAAA-GATAGCTGAT 761
|||||||| |||||||| ||| ||||| ||| ||||| ||| || |||| |||| |||||
Sbjct 289 TTCTTGCTACTAGAGCACAAA-TTCTTTGAGGTTCTC-AAGATGCAAAAGGATA-CTGAT 345
Query 762 GCGCTACGC-ACCTTAAGGAATGAGATGGCGCCTCTTCGTATTAATACA-AAGCGTGTTC 819
|| || || |||||||| || |||||| |||||||| || |||| | | ||||| ||||
Sbjct 346 GCTCT-GGCAACCTTAAGAAAGGAGATGACGCCTCTTGGTTTTAACA-AGAAGCGCGTTC 403
Query 820 ATGAGCTCGCTTCC-TCCCTTATATCACCTTCAAGCTTTATATCACATACCACTTCGACT 878
|||||||||| ||| | | || || | || ||| | | | | | |||
Sbjct 404 ATGAGCTCGCATCCAT-AC-TA-AT-A---TC-AGC----T-T--C-T---GC--CGA-- 440
Query 879 CCAGGTAAAGAAAGTGTGAATTCAAGGTCTAAGGTTTTGGAGGA-ACTGCAAACCTTGCT 937
|| ||||||||||||||||||| ||||||||||| |||| || |||||||| |||| |
Sbjct 441 --AGATAAAGAAAGTGTGAATTCAGGGTCTAAGGTTGTGGA-GACACTGCAAAACTTGTT 497
Query 938 TCCTGCTTC-TGTTATAATCCCAGAAAAGAGGTTGGAGTGT-TTAGTTGAGAA-TTCACT 994
|||| || | || | |||||||||||||| ||||||| | | | | ||||| | ||
Sbjct 498 TCCTCCTGCAACTT-TTATCCCAGAAAAGAGATTGGAGTATCTCA-TAGAGAAGGGC-CT 554
Query 995 TCA-TATTCAGCGGGATTCT-TGTGTTTTCCATAATACTT-TGGATAGTGATTTGTCTTT 1051
| | || | || | |||| |||| | |||||||| || | || |||||||||| |
Sbjct 555 TGATTA-TGAG-TTGTTTCTCTGTGAGTGCCATAATA-TTCCGAATTGTGATTTGTCCCT 611
Query 1052 GTA-TTCTGATCATCAATGCGGGAAGCACCAAATTCCTTCTCAGACTGCT-CAGATC-TT 1108
| ||||||||||| || |||| || ||||||||||| |||||| | |||| | ||
Sbjct 612 -AAGCTCTGATCATCATTGTGGGATCCATAAAATTCCTTCTAAGACTG-TACAGA-CTTT 668
Query 1109 GGAGTCA-CATACCGATGAAGTTTGGTTCTTGCAATTTTCACATAATGGCAAATATTTGG 1167
| || | ||||| |||||||| ||||||||| |||| |||||| ||||||| |||||||
Sbjct 669 GAAG-AACCATACGGATGAAGTCTGGTTCTTGGAATTCTCACATGATGGCAAGTATTTGG 727
Query 1168 CTTCATCTTCCAAGGATCAAA-CCGCAATTATATGGGAGATCAG-CGCAGATGGGCACAT 1225
||||||||||||||||| ||| | |||||||||||||||||| | ||| | ||| | |
Sbjct 728 CTTCATCTTCCAAGGAT-AAATCAGCAATTATATGGGAGATC-GATGCACAGGGGAAGTT 785
Query 1226 TTCATTGAAGCATACACTTGTTGGCCACCACAAACCCGT-G-ATTGCCATCTTATGGAGT 1283
||| |||||||| |||||| || || | || ||||| | | || | || ||||||
Sbjct 786 TTCGGAGAAGCATAAACTTGTGGGACATGAGAAGCCCGTGGTAATG--GTTTTGTGGAGT 843
Query 1284 CCTGATGATCGTCAAGTTC-TTACATGTGGAGCAGAA-GAGGTTATCA-GACGCTGGGAT 1340
||||||||| |||| || ||||||||||| | || |||||||||| || ||||||||
Sbjct 844 CCTGATGATAAACAAG-TCGCTACATGTGGAG-AAAATGAGGTTATCAGGA-GCTGGGAT 900
Query 1341 GTTGATTCAGGAGACTGTGTTCACAT-GTATGAAA-AAGGCGGTATCAGTCCCATTTCTT 1398
||||| |||||||| | | |||| || ||| |||| || ||| | || | ||||||
Sbjct 901 GTTGAGTCAGGAGAATTTATTCA-ATCGTACGAAAGAA-ATGGTGTTGGTTCTGTTTCTT 958
Query 1399 GCGGATGGTATCCTGATGG-GCAGGGGATAATCGCCGGGATGACAGACCGAAGCATCTGC 1457
| ||||||| || |||||| || || ||||| || |||||||||||| |||||||||||
Sbjct 959 GTGGATGGTTTCATGATGGATCA-GGTATAATTGCTGGGATGACAGACAGAAGCATCTGC 1017
Query 1458 ATGTGGGATTTAGATGGTAGAGAGAAG-GAATGC-TG-GAAAGGT-CA-GAGGACTCAAA 1512
||||| |||||||||| || | || | ||| || | ||||| || | ||| || |
Sbjct 1018 TTGTGGAATTTAGATGG--GACTG-AGCTAGTGCATGAGCAAGGTCCACG-GGA-ACAGA 1072
Query 1513 AGGTATCAGATATAGCAATGACGGATGATGGAAAGTGGCTCGTAAGTGTATGCA-AAGAT 1571
|| | || ||| |||| ||||| ||||||| |||||||| ||||||| || | | | |
Sbjct 1073 AGCTTTCTGATGTAGCCATGACAAATGATGGGAAGTGGCTTGTAAGTG--TGGACAGGGT 1130
Query 1572 TC-CGTGATATCACTATTTGATAGAGAAGCTACAGTTGAGAGA-TTAATAGAAGAGGAAG 1629
| ||||| ||| | ||| |||||||| | | || || |||| | | || ||||||||
Sbjct 1131 GCATGTGATCTCATTGTTTAATAGAGAAACCAGAGCTGTGAGACTGATTA-CAGAGGAAG 1189
Query 1630 ACATGATTACCTCGTTCTCGCTTTCGAATGACAACAAATATATCCTGGTAAACCTCCTCA 1689
|||||||||||||||||||||| ||||| ||||||| || | ||| | || ||| | |
Sbjct 1190 ACATGATTACCTCGTTCTCGCTGTCGAAAAACAACAAGCATCTTCTGATCAATCTCATTA 1249
Query 1690 ACCAGGAA-ATCCGTCTCTGGAATATTGAAGGTGACCCC-A-AGATTGTGTCGAGATACA 1746
|||| || |||| | ||||||| |||||||| | || | | || || | || ||| |
Sbjct 1250 CCCAG-AAGATCCATGTCTGGAACATTGAAGGCCAACCATATAAAT-GTTTTGA-ATATA 1306
Query 1747 AAGGCCACAAGCGTTCACGATTCATCATCAGATCATGCTTTGGTGGGTAT-AA-ACAAGC 1804
| |||||||||||| || || |||||||| |||||||||||||| ||| || ||| ||
Sbjct 1307 ATGGCCACAAGCGTAGTCGGTTTATCATCAGGTCATGCTTTGGTGGCTATGAAGACA-GC 1365
Query 1805 TTTCATCGCTAGCGGAAGCGAGGACTCTCAGGTATATATATGG--CA--C-A-GATCTAC 1858
|| |||||| || || || || || |||||||| || |||||| || | | ||| |||
Sbjct 1366 TT-CATCGCCAGTGGGAGTGAAGATTCTCAGGTGTACATATGGATCATACGAAGAT-TAC 1423
Query 1859 AG--GGAAG-TTAATAGTTG-AGCTACCAGGCCA-TGCAGGAGCAGTTAACTGCGTGAGC 1913
|| |||| || || ||| | | | ||| || | ||||||| || ||||||||||||
Sbjct 1424 AGAAGGAACCTTG-TA-TTGTAT-TGCGAGGACACT-CAGGAGCTGTGAACTGCGTGAGC 1479
Query 1914 TGGAGCCCGACGAATCTACACATGTTGGCTTCAGCAAGCGATGATGGAACAATAAGGATA 1973
|||| ||||| || || || ||||||||||||||||| || |||||||| || ||||
Sbjct 1480 TGGAACCCGATTAACCTGCATATGTTGGCTTCAGCAAGTGACGATGGAACCATTCGGATT 1539
Query 1974 TGGGGACTTGAC 1985
||||||||||||
Sbjct 1540 TGGGGACTTGAC 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86579126885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5