BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08565.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940349 jgi|Araly1|940349|scaffold_600893.1 593 4e-169
Ahg951176 jgi|Araly1|951176|scaffold_803063.1 344 4e-94
> Ahg940349 jgi|Araly1|940349|scaffold_600893.1
Length=391
Score = 593 bits (321), Expect = 4e-169
Identities = 356/373 (95%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 47 GATTTTGAAGACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCC 106
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTTGGAGACAAATCACAATGGGAGAAGCGCCTGCCCAGATTCCGACGAGTTTCGGCC 60
Query 107 ACGAGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGATT 166
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ACGAGCTCAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGACT 120
Query 167 CTGGATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATG 226
|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 121 CTGGTTGCGAGAATTGTCCTTTCTTCAAAATGGAAGACGATCATGAACGTATCGTCGATG 180
Query 227 TTACAACTCCC-AACTTCAATGGTATAATCTCTATGATGGATCCACGCAGAAGTTGGGCA 285
||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TTACAAC-CCCTAATTTCAATGGTATAATATCTATGATGGATCCACGCAGAAGTTGGGCA 239
Query 286 GCAAGATGGTTAAGAATTGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAG 345
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCAAGATGGTTAAGAATAGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAG 299
Query 346 GCACTCCCAGAGGAAATGCAGTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCC 405
||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 300 GCACTCCCAGAAGAAATGCAGTCCATATGCCAACAAGTACGGGTGCAGTACGTTCCGCCC 359
Query 406 AAACGTATTTGAA 418
||||| |||||||
Sbjct 360 AAACGCATTTGAA 372
> Ahg951176 jgi|Araly1|951176|scaffold_803063.1
Length=392
Score = 344 bits (186), Expect = 4e-94
Identities = 311/371 (84%), Gaps = 10/371 (3%)
Strand=Plus/Plus
Query 53 GAAGACAAATC-ACAATGGGAGAAGCG--CCTGCCCAGATTCCGACGAGTTTCGGCCACG 109
||| ||||| | | ||| || |||||| || || ||||||||||| ||||||||||| |
Sbjct 7 GAAAACAAA-CGATAAT-GG-GAAGCGCACCAGCTCAGATTCCGACTAGTTTCGGCCATG 63
Query 110 AGCTTAGGGCTTGTCTTCGATGCCGCCTCGTCAAGACCTACGATCAGTTTAGGGATTCTG 169
||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| |||
Sbjct 64 AGCTTAGGGCTTGTCTTCGTTGCCGACTCGTCAAGACCTATGACCAGTTCAGGGACGCTG 123
Query 170 GATGCGAGAACTGTCCTTTCTTCAAAATAGAAGACGATCATGAACGCATCGTCGATGTTA 229
| |||||||| || ||||||||||| || ||||| |||||||| || ||||| || || |
Sbjct 124 GTTGCGAGAATTGCCCTTTCTTCAAGATGGAAGAGGATCATGAGCGTATCGTGGAGGTCA 183
Query 230 CAACTCCC-AACTTCAATGGTATAATCTCTATGATGGATCCACGCAGAAGTTGGGCAGCA 288
| || ||| || |||||||||||||||||| ||||||||||| | ||||| ||||| ||
Sbjct 184 CTAC-CCCTAATTTCAATGGTATAATCTCTGTGATGGATCCAAGTAGAAGCTGGGCTGCT 242
Query 289 AGATGGTTAAGAATTGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCTGTCTCAGAGGCA 348
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 243 AGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTTGCGGTCTCAGAGCCA 302
Query 349 CTCCCAGAGGAAATGCAGTTCATATGCCAACAAGCA-CGGGTGCAGTACGTTCCACCCAA 407
||||| |||||||||||| | |||||||| ||| | || || || || |||| || ||
Sbjct 303 CTCCCTGAGGAAATGCAGCACCTATGCCAAGAAG-AGCGTGTACAATATGTTCTGCCGAA 361
Query 408 ACGTATTTGAA 418
||| || ||||
Sbjct 362 ACGCATGTGAA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5