BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08580.1
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325456 jgi|Araly1|325456|fgenesh1_pm.C_scaffold_6000676 1940 0.0
> Ahg325456 jgi|Araly1|325456|fgenesh1_pm.C_scaffold_6000676
Length=1176
Score = 1940 bits (1050), Expect = 0.0
Identities = 1134/1176 (96%), Gaps = 0/1176 (0%)
Strand=Plus/Plus
Query 106 ATGAGTAAAGCTTCGGTGATCCTATACATTACGGTAGGAATCCTGGTGCTCTTCCTCGTC 165
||| ||||||||||||||||||||||||| ||||| || ||||| |||||||||||| ||
Sbjct 1 ATGGGTAAAGCTTCGGTGATCCTATACATCACGGTGGGGATCCTCGTGCTCTTCCTCATC 60
Query 166 TCTTATTCACCGAAGAAGAAGGGTGACCACGATCACCACCATGGTGGTCACAATCAACAT 225
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 TCTTATTCCCCGAAGAAGAAGGGTGACCACGATCACCACCACGGTGGTCACAACCAACAC 120
Query 226 CACCGCTTAAAACTCCGGTCTTCTTTCAATTTCAAACCCACTCGTCACGATCCAGTTCCG 285
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACCGCTTAAAACTCCGGTCTTCTTTCAATTTCAAACCTACTCGTCACGATCCAGTTCCG 180
Query 286 TTTGATCCTCTTGTCGCCGACATGGAGCGCCGCCGCGAGGATAAGGAGTGGGAGCGACAG 345
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 181 TTCGATCCTCTTGTCGCCGACATGGAGCGCCGTCGCGAGGATAAAGAGTGGGAGCGACAG 240
Query 346 TACATTGAGCATTCTCACCCGGAGCTTGTCTCTCATTCTCAGAAAGAAACAACCGGTGGT 405
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TACATTGAGCATTCTCATCCAGAGCTTGTCTCTCATTCACAGAAAGAAACAACCGGTGGT 300
Query 406 GGACATGAACATGCACCTGGTCACGAGTCGCAGCCTGAGTGGGAAGAATTCATGGATGCT 465
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 GGACATGAACATGCACCTGGTCACGAGTCGCAACCTGAGTGGGAAGATTTCATGGATGCT 360
Query 466 GAGGATTACTTAAATGATGAGGAGAAGTTCAATGTCACTGATAGGCTGATATTGTTGTTT 525
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 GAGGATTACTTGAATGATGAGGAGAAGTTCAATGTCACTGATAGGCTGATGTTGTTATTT 420
Query 526 CCGAAGATTGATGTTTCTCCTGCTGATGGGTTTATGACGGAGAGTGAATTGACTGAGTGG 585
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 421 CCGAAGATCGATGTTTCTCCTACTGATGGGTTTGTGACGGAGAGTGAATTGACTGAGTGG 480
Query 586 ACTATGCAGTCTTCTGCCAAGGAAGTTGTGCACAGAACTCAACGAGACCTGGATGTTCAT 645
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 ACTATGCAGTCTTCTGCCAAGGAAGTTGTGCACAGAACTCAAAGAGACCTGGATGTTCAT 540
Query 646 GATAGAAACAAAGATGGTTTTATTTCTTTCTCTGAATATGAACCACCGTCTTGGGTCCGT 705
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATAGAAACAAGGATGGTTTTATTTCTTTCTCTGAATATGAACCACCGTCTTGGGTCCGT 600
Query 706 AAGTCGGATAATAATTCGTTTGGCTATGATATGGGCTGGTGGAAGGAGGAGCATTTTAAT 765
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 601 AAGTCGGATAATAATTCCTTTGGCTATGACATGGGCTGGTGGAAGGAAGAGCATTTTAAT 660
Query 766 GCATCAGATGCAAATGGTGATGGTCTTCTGAATTTAACAGAGTTTAACGACTTTCTGCAT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCATCAGATGCAAATGGTGATGGTCTTCTGAATTTAACAGAGTTTAACGACTTTCTGCAT 720
Query 826 CCTGCTGACACCAAGAACCCAAAGTTACTGTTATGGTTATGCAAGGAGGAAGTAAGAGAA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTGCTGACACCAAGAACCCAAAGTTACTGTTATGGTTATGCAAGGAGGAAGTAAGAGAA 780
Query 886 AGGGATTCAGATAAAGATGGGAAGATCAGTTTCGAAGAGTTTTTCCACGGCCTCTTTGAC 945
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGGGATTCAGATAAAGATGGTAAGATCAGTTTCGAAGAGTTTTTCCACGGCCTCTTTGAC 840
Query 946 ACTGTAAGGAACTACGAAGAAGACAATCACAATTCTACGCATCCTTACCATGACTTGCCT 1005
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 841 ACTGTAAGGAACTACGAAGAAGACAATCACAATTCTACGCATCCTTATCATGACTTACCT 900
Query 1006 GAAGGCCCAGCAAAGCAGTTGTTTTCTCAGCTTGACAAAAATGATGACGGGTACTTATCA 1065
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 GAAGGCCCTGCAAAGCAGTTGTTTGCTCAGCTTGACAAAAATGATGACGGGTACTTATCA 960
Query 1066 GACGTTGAATTGCTTCCCATTATCAGTAAAATCCATCCTACTGAGCATTATTATGCAAAG 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GACGTTGAATTGCTTCCCATTATCAGTAAAATCCATCCTACTGAGCATTATTATGCAAAA 1020
Query 1126 CAACAAGCTGATTATATAATATCACAGGCGGATTCAGACAAAGATAGACGTTTGACTTTG 1185
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 CAACAAGCTGATTATATTATATCACAGGCGGATTCAGACAAAGATAGACGTCTGACTTTG 1080
Query 1186 GCAGAGATGATTGAGCATCCATACGTCTTCTACAGTGCCATTTTCGATGAAGATGACACT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGAGATGATTGAGCATCCATACGTCTTCTACAGTGCCATTTTCGATGAAGATGACACT 1140
Query 1246 GATGATGATTATGGTTTCCACGATGAATTCCGCTAG 1281
|||||||| ||||| | ||||||||| |||||||||
Sbjct 1141 GATGATGACTATGGCTACCACGATGAGTTCCGCTAG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5