BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08600.2
Length=2821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350126 jgi|Araly1|350126|fgenesh1_pg.C_scaffold_6000719 1984 0.0
Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1 1360 0.0
> Ahg350126 jgi|Araly1|350126|fgenesh1_pg.C_scaffold_6000719
Length=2325
Score = 1984 bits (1074), Expect = 0.0
Identities = 1279/1375 (93%), Gaps = 26/1375 (2%)
Strand=Plus/Plus
Query 463 gatgatgatgatgatAGGCACTCACGAATGTTGAAAAATGTCACTGAATTGCCAATTTCA 522
||||||||||| ||||||||| |||| ||||||||| ||||||||| |||||||||| ||
Sbjct 289 GATGATGATGAAGATAGGCACACACGGATGTTGAAAGATGTCACTGGATTGCCAATTGCA 348
Query 523 GCCTTTCAAGGAGAGAGTAAGAACAAACGTGTAGTCTTTACTGAACCATATCCAGAGTCT 582
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 349 GCCTTTCAAGGAGAGAGTAAGAGCAAACGTGTAGTCTTCACTGAACCATATCCAGAGTCT 408
Query 583 GAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACTTT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 409 GAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACCTT 468
Query 643 ATGGAGCCTCTTCAAGGATTACATGGAAATAGCCAACTAAGCAATATGATCTCCCGGATG 702
|||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||
Sbjct 469 ATGGAGCCTCTTCAAGGATTACCTGGATATAGCAAACTAAGCAATATGATCTTCCGGATG 528
Query 703 CGAAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCCAGAACAAGAAAGACTG 762
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 529 CGAAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCAAGAACGAGAAAGACTG 588
Query 763 GAACGGGATGTAGCGAATGAACTGGTTTACAAGGGGTTTGATATTTGGGTGCCTCTGGTA 822
|||||| |||||| ||| ||||| ||| |||||| |||| ||| ||||||||||||||||
Sbjct 589 GAACGGAATGTAGTGAAAGAACTAGTTGACAAGGTGTTTAATAATTGGGTGCCTCTGGTA 648
Query 823 AAAAGGAACAGAGAGGCACCAACTATTTACTTTAACCAAGATGTCAATGTTGGATACTCT 882
|| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 649 AAGAGGAATAGGGAGGCACCAACTGTTTACTTTAACCAAGATGTCAATGTTGGATACTCT 708
Query 883 ACCGTTGGTGCTATAGCATCACAATTTCATCCCAGGACTGAATTTGAGATGAAAATGGCT 942
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 709 ACCGTTGGTGCTATAGCATCACAATTTCAGCCCAGGACTGGATTTGAGATGAAAATGGCG 768
Query 943 TCTCTACTCGATGATCATGAGATTTTGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 1002
||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 769 TCTCTACTCGATGATAATGACATTTGGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 828
Query 1003 GAATTCAAC---G--AG----GTATCTATGGAAGATCACATCAAGAGACGTAACCATGTT 1053
||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 829 GAATTCAACGAGGCAAGTTTTGTATCTATGGAAGATCACATCAAGAGACGTAACCATGTT 888
Query 1054 GCTAAGATGCGGAGCATGCTCTTCCGAGTTGACCTGAAACA-TAAACGAATCAAGCAGAT 1112
|| |||||||| |||||||| |||||||||||||||||| | ||||||||||||| ||||
Sbjct 889 GCGAAGATGCGTAGCATGCTGTTCCGAGTTGACCTGAAA-AGTAAACGAATCAAGAAGAT 947
Query 1113 TAAGTCTAAAACATATCATCGCCTTAAAAACAAAGACCTGAATCAATCGGGTGTTGGAGC 1172
|||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 948 TAAGTCTAAAACTTATCATCGCCTTAAAAACAAAGACCTGAATAAATCGGGAGTTGGAGC 1007
Query 1173 ATTCATGGAGCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCGAGGCGAGTAAA 1232
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1008 ATTCATGGACCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCTAGACGAGTTAA 1067
Query 1233 GGAACGTATGACTTTAAAGCACAAAAACACAGGACAATGGGCCAAACGCATGCTAAGCCG 1292
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1068 GGAACGTATGACTTTAAAGCACAAAAACACAGGACCATGGGCCAAACGCATGCTAAGGCT 1127
Query 1293 TGGACTGAATAGGAAATACGATGTG-ACTCAGGCAGCTCTATCTAAACAACTTCAAATTC 1351
||||||||||||||||||||||| | |||||||||||| ||||| |||||||||| |||
Sbjct 1128 TGGACTGAATAGGAAATACGATG-GAACTCAGGCAGCTATATCTGAACAACTTCAGATTA 1186
Query 1352 ATGCTACTTTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGATGAGGAAG 1411
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1187 ATGCTACATTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGACGAGGAAG 1246
Query 1412 ATTTGAATGATGGTTCAGATCAGGATACTTCTAAACTGATAGCGGAAGCAAAGGAGAAGA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ATTTGAATGATGGTTCAGATCAGGATACTTCTAAACTGATAGCGGAAGCAAAGGAGAAGA 1306
Query 1472 TACTGAAAACTGTGGACGATGATGAAGTCCCCATTTCTCGTCTTATGTCATTACCTTTCA 1531
|||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1307 CACTGAAAACTTTGGAAGATGATGAAGTCCCCATTTCTGGTCTTATGTCATTACCTTTCA 1366
Query 1532 TGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAGAAGGTAAACGTG-ATATT 1590
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1367 TGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAGAAGATAAACGTGGAC-TT 1425
Query 1591 GAGGAGT-TG--GAG---AA-AT-T-TGGTGGAGCAGAAACCTCTAAAAAGTCCACTAAT 1641
||||||| | ||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 1426 GAGGAGTATAAAGAGTTGAAGAACTCTGGTGGAGCAGAAACCTCTAAAAAGTCCACTAAT 1485
Query 1642 GTTGTTGGTAGAAGAGTATTTGGTGCAGAAGCTCCAAAAGAGTCTGAAAAGGAATCAGAC 1701
|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1486 GTTGGTGGTAGAAGAGTATTTGGGGCAGAAGCTCCAAAAGAGTCTAAAAAGGAATCAGAC 1545
Query 1702 AACCTTTTTGATAACAGTGATAGTAGTGACAATGATATGGAAGATAATGAGTTAGAGGCT 1761
||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1546 AACTTTTTTGATAGCAGTGATAGTAGTGACAATGATATGGATGATAATGACTTAGAGGCT 1605
Query 1762 GTAAAAGATAATGCTTCACCTGCTAGAAACACTGAAA-CCATTATGGAAGCCGAG 1815
||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||
Sbjct 1606 GTAAAAGATAATGCTTCACCTGCTAGAAAAACT-AAAGCCATTATGGAAACCGAG 1659
Score = 880 bits (476), Expect = 0.0
Identities = 572/616 (93%), Gaps = 16/616 (3%)
Strand=Plus/Plus
Query 2004 AGAAAGTG---ATGATTCAGAGAGTGAAGCAGAGCAAATGGTTGATGGGATTTTGACATG 2060
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 AGAAAGTGATTATGATTCAGAGAGTGAAGCAGAGCAAATGGTTGATGGGATTTTGACATG 1748
Query 2061 CGGTTCAAAGGAAACGTATGAAATTCCTTGTCAAGCAGAGCTTGTAAGCCGTGCTTTTGC 2120
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1749 TTGTTCAAAGGAAACCTATGAAATTCCTTGTCAGGCAGAGCTTGTAAGCCGTGCTTTTGC 1808
Query 2121 TGGTGATGACGTTGAAGGTGACTTTGAGAAGGATAAGCAAGAGGTACTAAATCAGGAAGT 2180
|||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1809 TGGTGATGACGTTGTAGGTGAATTTGACAAGGATAAGCAAGAGGTACTAAATCAGGAAGT 1868
Query 2181 TCCTGAACCCGAGAAACCGGTTCAAGTTGCTGGTTGGGGACATTGGACCAATAACCAAAA 2240
|||||||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 1869 TCCTGAACCCGAAAAACCAGTTCAAGTTCCTGGTTGGGGACAATGGACCAATACCCAAAA 1928
Query 2241 CAAGAGAGGTTTACCATCAAGGATTGTTAGAGAACACGAAGAAGCCAAGAAAACGAGAGA 2300
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1929 CAAGAGAGGTTTACCATCAAGGATGGTTAGAGAACACGAAGATGCCAAGAAAACGAGAGA 1988
Query 2301 GCAAGCTCTCAGAAAAAGGAAAGACGCTTCTTTCAAACATGTTATCATATCAGAAAAAGT 2360
||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1989 GCAAGCTCTCAAAAAAAGGAAAGACGCTTCTCTCAGACATGTTATCCTATCAGAAAAAGT 2048
Query 2361 TGATAAAAAGGCTGAGAAACTTCAGACAAAGAGTCTACCTTACCCTTACACATCAAAGGA 2420
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2049 CGATAAAAAGGCTGAGAAACTTCATACAACGAGTCTACCTTACCCTTACACATCAAAGGA 2108
Query 2421 AGTTTTCGAACAAAGTATGCGTATGCCTATAGGACCTGAGTTTAATCCCACAACTATTGT 2480
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2109 AGTTTTTGAACATAGTATGCGTATGCCTATTGGACCTGAGTTTAATCCCACAACTATTGT 2168
Query 2481 TGGAGTTCTAAACCGACCTGAGGTTGTGAAGAAAGCTGGAGTGATCATTAAACCTGTCAA 2540
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2169 TGGAGATCTAAACCGACCTGAGGTTGTGAAGAAAGCTGGAATGATCATTAAACCTGTCAA 2228
Query 2541 GTTTGAGGAAGTAAATCCGAA--------T-GA---CGAACACCCTCGTAGCCATCAGAA 2588
||||||||||||| ||||||| | || ||||||| ||||||||||||||||
Sbjct 2229 GTTTGAGGAAGTAGATCCGAAGGAGAAAGTAGAGGACGAACACGCTCGTAGCCATCAGAA 2288
Query 2589 ACAAAAACCCAAGAAA 2604
|||||||||||| |||
Sbjct 2289 ACAAAAACCCAA-AAA 2303
Score = 353 bits (191), Expect = 3e-96
Identities = 249/276 (90%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 118 GGAGGAGAGAAGAGGAAATCTAGTTTCAAAAACCTAGCTAATGCAAAGAAGAGGAGAACA 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 4 GGAGGAGAGAAGAGGAAACCTAGTTTCAAAAACCTAGCTAATGCAAAGAAGAGGA-AA-- 60
Query 178 GGACCTCACTTACCTAGCTCAATACTCAAGACCATTGCGAATGAGAAACGTCCTTTGAAC 237
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 GGACCTCACTTACCCAGCTCAATACTCAAGACCATTGCCAATGAGAAACGCCCTTTGAAC 120
Query 238 TCTGACGAAGGAGACGATGAGATTGATTCTGCTTACGGTGAT--TTT-TACGAGTACGAA 294
||||||||||||||||||||||| ||||| | |||||||||| ||| ||||||||||||
Sbjct 121 TCTGACGAAGGAGACGATGAGATCGATTCCGATTACGGTGATGATTTGTACGAGTACGAA 180
Query 295 GAAGGTGTGCCTGAAGAGGAATCTAGGAAAAACAACCGCTACGAACGCGTCGTTAACTAC 354
||||||||| ||||||||||||| ||||||||||| |||||||| ||||| | ||||||
Sbjct 181 GAAGGTGTGGCTGAAGAGGAATCCAGGAAAAACAAACGCTACGACCGCGTGGATAACTAT 240
Query 355 GAATTCGAGCTTGCAGAGGATTGCGAGGTT-AAAAC 389
||||| |||||| | ||||||| |||| | |||||
Sbjct 241 GAATTTGAGCTTCCCGAGGATTTTGAGGATGAAAAC 276
> Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1
Length=2720
Score = 1360 bits (736), Expect = 0.0
Identities = 1335/1610 (83%), Gaps = 98/1610 (6%)
Strand=Plus/Plus
Query 1021 ATGGAAGATCACATCAAGAGA-CGTAACCATGTTGCTAAGATGCGGAGCATGCTCTTCCG 1079
|||||||| ||||||||| | ||| |||| |||| |||||||||||| ||||||||||
Sbjct 949 ATGGAAGACCACATCAAG-TACCGTGACCACATTGCCAAGATGCGGAGCCTGCTCTTCCG 1007
Query 1080 AGTTGACCTGAAACA-TAAACGAATCAAGCAGATTAAGTCTAAAACATATCATCGCCTTA 1138
||| |||||| | |||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1008 CCATGAACTGAAA-AGTAAACGTATCAAGAAGATTAAGTCTAAAACTTATCATCGCCTTA 1066
Query 1139 AAAACAAAGACCTGAATCAATCGGGTGTTGGAGCATTCATGGAGCCAGCAATGGCTAAAG 1198
|| |||||||||||| |||||| | |||||||| ||||| |||| |||||||||||
Sbjct 1067 AAGGCAAAGACCTGAAGAAATCGGCCATGGGAGCATTTATGGACCCAGAAATGGCTAAAG 1126
Query 1199 AAGAGGCTAAGAAGCAGGAGGCGAGGCGAGTAAAGGAACGTATGACTTTAAAGCACAAAA 1258
||||||||| ||||||||| | || |||||| ||||||| ||||| || ||||||||||
Sbjct 1127 AAGAGGCTATTAAGCAGGAGACTAGACGAGTAGAGGAACGGATGACGTTGAAGCACAAAA 1186
Query 1259 ACACAGGACAATGGGCCAAACGCATGCTAAGCCGTGGACTGAATAG-GAAATACGATGTG 1317
|||| ||| ||||||||||||||||| ||||||||||||||||| | || ||| |||| |
Sbjct 1187 ACACCGGAAAATGGGCCAAACGCATGTTAAGCCGTGGACTGAAT-GAGAGATATGATG-G 1244
Query 1318 -ACTCAGGCAGCTCTATCTAAACAACTTCAAATTCATGCTACTTTGTCCAGAAAGATGAA 1376
|||| ||||||| ||||| |||||||||| ||| |||| |||||||| |||||||||||
Sbjct 1245 AACTCGGGCAGCTATATCTGAACAACTTCAGATTAATGCCACTTTGTCAAGAAAGATGAA 1304
Query 1377 CTCCACAAAAGATGAAAGTAGTAGTGAT--GAG-GAAGAT-TTG-A-A--TGA----TGG 1424
|||||| || |||| |||||| |||||| ||| || ||| | | | ||| |||
Sbjct 1305 CTCCACGAACGATGGAAGTAGCAGTGATGAGAGCGACGATGAGGAAGAGTTGAGTTGTGG 1364
Query 1425 TTCAGATCAGGATA---CTTCTAAACTGATAGCGGAAGCAAAGGAGAAGATACTGAAAAC 1481
|||||||| ||||| |||||||| ||||||| |||| | |||||||| |||||||||
Sbjct 1365 TTCAGATCTGGATACTCCTTCTAAATTGATAGCAAAAGCCAGGGAGAAGACACTGAAAAC 1424
Query 1482 TGTGGACGATGATGAAGTCCCCATTTCTCGTCTTATGTCATTACCTTTCATGGCTCGTGC 1541
|||||| ||||||||||| |||| |||| ||||| | |||||||||||||||||||||||
Sbjct 1425 TGTGGAAGATGATGAAGTACCCAATTCTGGTCTTCTTTCATTACCTTTCATGGCTCGTGC 1484
Query 1542 TGTGAAAAAGAAAAACGAGGAAGCTAAAGAAGAAGGTAAACGTG-ATATTGAGGAGT-TG 1599
| ||||||||||||||||||||| ||| ||||||| |||||||| || ||||||||| ||
Sbjct 1485 TATGAAAAAGAAAAACGAGGAAGTTAATGAAGAAGCTAAACGTGCAT-TTGAGGAGTATG 1543
Query 1600 --GA----GA-AATT-TGGTGGAGCAG-AAACCTCTA-AAAAGTCCACTAATGTT-GTTG 1648
|| || |||| ||||||||||| ||| | ||| |||| ||| || ||||| | ||
Sbjct 1544 AAGAGTTGGAGAATTCTGGTGGAGCAGAAAATC-CTAGAAAA-TCCGCTGATGTTAG-TG 1600
Query 1649 GTAGAAGAGTATTTGGTG------C---A---GAAGCTCCAAAAGAGTCTGAAAAGGAAT 1696
|||||||||||||||||| | | |||||||||||||||||| ||||||| |
Sbjct 1601 GTAGAAGAGTATTTGGTGCCACCTCTAAAGTCGAAGCTCCAAAAGAGTCTAAAAAGGACT 1660
Query 1697 CAGACAACCTTTT-TGATAACAGTGATAGTAGTGACAATGATAT----GG-A-AG---AT 1746
| ||||| ||||| ||| ||||||| | |||||| |||||||| || | || ||
Sbjct 1661 CGGACAA-CTTTTATGACAACAGTG--A-TAGTGAAAATGATATGGAAGGCATAGAAAAT 1716
Query 1747 AATGA-GTTAGAGGCTGTAAAAGATAATGCTTCACCTGCTAGAAACACTGAAACCATTAT 1805
||||| || | || | | ||||| ||||||||||||||||||||||| | |||| |
Sbjct 1717 AATGACCTT-GTGGGTATTGGAGATACTGCTTCACCTGCTAGAAACACTGGAGCCATAAC 1775
Query 1806 GGAAGCCGAGAAGTTGGATGAT-ATTGCTGGAAACCCAGCATCTAAGACAACATTTGATG 1864
|| || |||||| | |||||| | || || ||| ||||| |||||||||||||||||||
Sbjct 1776 AGAGGCTGAGAAGCTCGATGATGA-TGTTGAAAATCCAGCTTCTAAGACAACATTTGATG 1834
Query 1865 TCGCCTTATATGCATCAGGCTCCTGGAAGAAGATGACAGGCTGCAAAAACGCAGAATCCA 1924
| ||||||| ||| |||||||| ||||||||||||| ||||||| |||| ||||||||||
Sbjct 1835 TTGCCTTATTTGCGTCAGGCTCTTGGAAGAAGATGAAAGGCTGCCAAAATGCAGAATCCA 1894
Query 1925 AAAAAGCTTCAAAGACGCATGTGCCCATTTCGCAGTCCCAAGATAAAAAGGAATCGAGTG 1984
||||| || ||||||| ||| || ||||| || |||||||||||||||||| |
Sbjct 1895 AAAAACCTCCAAAGACACATAAACCAATTTCAAAGGGCCAAGATAAAAAGGAATC----G 1950
Query 1985 ATTCAGAAAGTGATGATTCAGAAAGTGATGATTCAGAGAGTGAAGCAGAGCAAATGGTTG 2044
|| | ||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1951 ----AG--A--GATGA---AGAAAGTGAAGATTCCGAGAGTGAAGCAGAGCAAATGGTTG 1999
Query 2045 ATGGGATTTTGACATGCGG-TTCAAAGGAAACGTATGAAATTCCTTGTCAAGCAGAGCTT 2103
||||||||||||||| | | |||||||||||| ||||||||||||| |||||||||||||
Sbjct 2000 ATGGGATTTTGACAT-CTGCTTCAAAGGAAACCTATGAAATTCCTTCTCAAGCAGAGCTT 2058
Query 2104 GTA-AGCCGTGCTTTTGCTGGTGATGACGTTGAAGGTGACTTTGAGAAGGATAAGCAAGA 2162
|| | | |||||||||||||||||||||||| | ||| |||||||||||||| |||||
Sbjct 2059 ATACAAC-GTGCTTTTGCTGGTGATGACGTTGTTGATGAATTTGAGAAGGATAAACAAGA 2117
Query 2163 GGTACTAAATCAGGAAGTTCCTGAACCCGAGAAACCGGTTCAAGTTGCTGGTTGGGGACA 2222
||| ||||||||||||||||||||||| || ||||| |||| |||| |||||||||||||
Sbjct 2118 GGTTCTAAATCAGGAAGTTCCTGAACCGGAAAAACCAGTTCTAGTTCCTGGTTGGGGACA 2177
Query 2223 TTGGACCAATAACCAAA-ACAAGAGAGGTTTACCATCAAGGATTGTTAGAGAACACGAAG 2281
|||||||||| ||||| | |||||||||||||| ||| |||| ||||||||||| ||||
Sbjct 2178 ATGGACCAATATCCAAAGA-AAGAGAGGTTTACCTTCATGGATGGTTAGAGAACATGAAG 2236
Query 2282 AAGCCAAGAAAACGAGAGAGCAAGCTCTCAGAAA-AAGGAAAGACGCTTCTT-TCA-AAC 2338
| || ||||||| |||| ||| || ||||| ||| |||||||||| | | | ||| ||
Sbjct 2237 ATGCAAAGAAAAAGAGAAAGCTAGATCTCA-AAACAAGGAAAGACTAT-CGTCTCAGAA- 2293
Query 2339 ATGTTATCATATCAGAAAAAGTTGATAAAAAGGCTGAGAAACTTCAGACAAAGAGTCTAC 2398
||||||||||||||||||||| |||||||||||||| |||||||| || | || |||||
Sbjct 2294 ATGTTATCATATCAGAAAAAGCCGATAAAAAGGCTGACAAACTTCATACGACGACTCTAC 2353
Query 2399 CTTACCCTTACACATCAAAGGAAGTTTTCGAACAAAGTATGCGTATGCCTATAGGACCTG 2458
||| ||| || ||||| ||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 2354 CTTTCCCATATACATCTAAGGAAGTTTTCGAACACAGCATGCGCATGCCTATAGGACCCG 2413
Query 2459 AGTTTAATCCCACAACTATTGTTGGAGTTCTAAACCGACCTGAGGTTGTGAAGAAAGCTG 2518
|||||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2414 AGTTTAATCCTGCGACTATTGTTGGAGCTCTAAACCGACCAGAGGTTGTGAAGAAAGCTG 2473
Query 2519 GAGTGATCATTAAACCTGTCAAGTTTGAGGAAGTAAATCCGAATGACGAA 2568
| ||||| |||||||| ||||| ||||||||||| ||||| || || |||
Sbjct 2474 GTGTGATAATTAAACCGGTCAAATTTGAGGAAGTGAATCCAAACGA-GAA 2522
Score = 505 bits (273), Expect = 9e-142
Identities = 474/571 (83%), Gaps = 14/571 (2%)
Strand=Plus/Plus
Query 452 atgatgatgatgatgatgatgatgatAGGCACTCACGAATGTTGAAAAATGTCACT-GAA 510
|||| |||| ||| | |||||||||||| ||| | || |||||| || || ||||| |||
Sbjct 329 ATGAGGATGGTGAAGGTGATGATGATAGACACACTCGTATGTTGCAAGATCTCACTGGAA 388
Query 511 TTGCCAATTTCAGCCTTTCAAGGAGAGAGTAAGAACAA-ACGTGTAGTCTTTACTGAACC 569
|||||| | ||||||||||||||||||||||| | || || |||| ||||||||||| |
Sbjct 389 -TGCCAAGTGCAGCCTTTCAAGGAGAGAGTAAG-AGAAGACCTGTACTCTTTACTGAAGC 446
Query 570 ATATCCAGAGTCTGAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCAC 629
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 447 GTATCCAGAGTCTGAATTCAATCCTACCCGTGATGTTCTGGAGGGTAAAGGCCTCATTTC 506
Query 630 AATTGATGAC-TTTATGGAGCCTCTTCAAGGATTACATGGAAATAGCCAACT-AAGCAAT 687
| |||| ||| ||| ||| ||||||| ||||| || ||| || | || ||| ||
Sbjct 507 AGTTGAGGACCTTT-TGGCGCCTCTTGAAGGAAAACCTGGGTTTAATGATCTTAAG-AAG 564
Query 688 ATGATCTCCCGGATGC-GAAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCC 746
| |||| |||||||| |||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 565 AGGATCAACCGGATGCAGAAA-GATACTCAGTCTGTTGTTCATGCTCCTCTGCCAAAGCC 623
Query 747 AGAACAAGAAAGACTGGAACGGGATG-TAGCGAATGAACTGGTTTACAAGGGGTTTGATA 805
||||| |||||||||||||||| | | | | ||| | ||| ||| | || | |||| |||
Sbjct 624 AGAACGAGAAAGACTGGAACGGAAAGCT-GTGAAAGGACTAGTTGAGAAAGAGTTTAATA 682
Query 806 TTTGGGTGCCTCTGGTAAAAAGGAACAGAGAGGCACCAACTATTTACTTTAACCAAGA-T 864
||||||| |||||| || ||||| || |||||||||||| ||||||| |||||| | |
Sbjct 683 AGTGGGTGCATCTGGTCAAGAGGAATAGGGAGGCACCAACTGTTTACTTCAACCAA-ACT 741
Query 865 GTCAATGTTGGATACTCTACCGTTGGTGCTATAGCATCACAATTTCATCCCAGGACTGAA 924
|||| |||||| |||||||| ||||| || ||||||||| | ||||| ||||||||||||
Sbjct 742 GTCAGTGTTGGCTACTCTACAGTTGGCGCAATAGCATCAGAGTTTCAACCCAGGACTGAA 801
Query 925 TTTGAGATGAAAATGGCTTCTCTACTCGATGATCATGAGATTTTGGAGGCTCACAAAGAA 984
||||||| ||||||||||||| ||||| ||||| | ||| || ||||||||||||||||
Sbjct 802 TTTGAGAAGAAAATGGCTTCTGTACTCAATGATAACGAGCTTGGGGAGGCTCACAAAGAA 861
Query 985 GATGGAGCTAGGCTTCTTGAATTCAACGAGG 1015
||||| |||| |||||||||||| |||||||
Sbjct 862 GATGGCGCTAAGCTTCTTGAATTGAACGAGG 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106462234775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5