BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08610.1
Length=2755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1 3027 0.0
Ahg940355 jgi|Araly1|940355|scaffold_600899.1 1943 0.0
Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896 1373 0.0
> Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1
Length=2540
Score = 3027 bits (1639), Expect = 0.0
Identities = 1790/1864 (96%), Gaps = 5/1864 (0%)
Strand=Plus/Plus
Query 799 GTCGTCTTTTCGTGGAAGGAGTGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGTAG 858
||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 632 GTCCTCTTTTCGTGGAAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 691
Query 859 GAATGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGTAGGAATGATAGAAATGTAGA 918
|||||| || |||||||| |||||||| ||||||||||| |||||||| || ||||||||
Sbjct 692 GAATGAGAGGAATGTAGATTCAGGGTCATCTTTTCGTGGAAGGAATGAGAGGAATGTAGA 751
Query 919 ATCAGGGTTTAGGAGAGAGCCAGGTTCCGAAAACAACAGGGGCTTGGGGAAACAGACAAG 978
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 752 TTCAGGGTTTAGGAGAGAGCAAGGTTTGGAAAACAACAGGGGCTTGGGGAAACAGACAAG 811
Query 979 AGGCTTAAGCCTGGAAGAGGAAGATAGTAGTGACGATGACGAGAACAGGGT-TGGATTGG 1037
||| |||| | ||||||||||||||||||||| || |||||| | || || | || ||
Sbjct 812 AGGTTTAAAACAGGAAGAGGAAGATAGTAGTGAAGAGGACGAGGAGAGAGTAT-TATCGG 870
Query 1038 GAAACATCGATGATTTGCCTAGTGAAGATAGTAGTGATGAGGATGATGAAAATGATGAGC 1097
||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 871 GAACCATTGATGATTTGCTTAGTGAAGATAGTAGTGATGAGGATGATGAAGATGATGAGC 930
Query 1098 CTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAACTGGTGAAC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 931 CTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAAGTGGTGAAC 990
Query 1158 ATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTC 1050
Query 1218 CCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGG 1277
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CCTTGTCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGG 1110
Query 1278 CTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTG 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTG 1170
Query 1338 GTAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCTCCTGCAA 1397
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1171 GGAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCCCCTGCAA 1230
Query 1398 GCCGGGATAGTAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTG 1457
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GCCGGGATAATAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTG 1290
Query 1458 CCAGTCAAGCTGCGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTATTGGTGTTC 1517
||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1291 CCAGTCAAGCTGCGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTC 1350
Query 1518 AAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTT 1577
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1351 AAGTTGTGATTGGAGGTACAAAACTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTT 1410
Query 1578 GCCAGATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGAT 1637
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1411 GCCAGATCCTTGTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGAT 1470
Query 1638 TCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATCATCTCTTGG 1697
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1471 TTGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGG 1530
Query 1698 ACATGGGTTTCCGAAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGCAGAGACAAA 1757
||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 1531 ACATGGGTTTCCGAAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAA 1590
Query 1758 CATTTTTATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGA 1817
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CATTTTTATTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGA 1650
Query 1818 AACGGGATCATGAGTTCATCAATTGTGTCCAAGAGGGCTCTGGGGAGACACATCAAAAGG 1877
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1651 AACGGGATCATGAGTTCATCAATTGTGTTCAAGAGGGGACTGGGGAGACACATCAAAAGG 1710
Query 1878 TCACACAAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCTACATGTGCTTC 1937
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1711 TCACACAAATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATATGTGCTTC 1770
Query 1938 TTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTA 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 TTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTA 1830
Query 1998 TGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAGCCTGAACGTCAGAGAGATCC 2057
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1831 TGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCC 1890
Query 2058 ATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGG 2117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 ATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGG 1950
Query 2118 CTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCAT 2177
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1951 CTATTATCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCAT 2010
Query 2178 TGGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAA 2237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 TAGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAA 2070
Query 2238 CCGGGCGGAAAGGGAAGGAAGGGGAAGGAGTCTTATTGTTGGCACCATGGGAAGAGTACT 2297
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2071 CGGGGCGGAAAGGTAAGGAAGGGGAAGGAGTATTATTGTTGGCACCATGGGAAGAGTACT 2130
Query 2298 TTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAG 2357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 TTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAG 2190
Query 2358 AGGCTGTGAAAAGGGTGCAGAAAGGGCTGAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2191 AGGCTGTGAAAAGGGTGCAGAAAGGGCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2250
Query 2418 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2310
Query 2478 GACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTA 2537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GACTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCTA 2370
Query 2538 TCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 TCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAAGT 2430
Query 2598 AGAT-TT-TCTTTTTT-CCTAGTGATCTGCTTTGGTTTTAAAACTTTAATGTTTTGTAAG 2654
|||| || | |||||| ||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 2431 AGATATTGTTTTTTTTACCTAGTGATCTACTTTGGTCTTAAAACTTTAGTGTTTTGTAAG 2490
Query 2655 TGTA 2658
||||
Sbjct 2491 TGTA 2494
Score = 1195 bits (647), Expect = 0.0
Identities = 723/760 (95%), Gaps = 3/760 (0%)
Strand=Plus/Plus
Query 1 TCACCGGTCACCGACGACGGGAACTTGGTAG-TTACAGGAACAAGAAATGTCCTCGAAGT 59
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 TCACCGGTCACCGACGACGGGAACTTGGTAGTTTACAGGAACAAGAAATGTCCTTGAAGT 60
Query 60 TCCCTCTCGGTGTACGCTTCATCACTCATTCTCTTCCTTGTACTCGTCTCGCTTCCATGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCTCTCGGTGTACGCTTCATCACTCATTCTCTTCCTTGTACTCGTCTCGCTTCCATGA 120
Query 120 ATTCTGGCGCCCTTATCTATTCATTTCGTTCCGTTCCTGTTCTATCCAAAGCCTTTCCTT 179
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ATTCTGGCGCACTTATCTATTCATTTCGTTCCGTCCCTGTTCTATCCAAAGCCTTTCCTT 180
Query 180 TTAGGTTAAAGTACATTGGATTAGGTTCCCGGGTCAACTTT-TCAACCCGACCAGAGAGA 238
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 181 TTAGGTTAAAGTACATTGGATTAGGTTCCCGGGTCAA-TTTCTCAACCCGACCAGAGAGA 239
Query 239 TCTCAACCCGAATTCGCGCGGCGAAGTGGAGCTGGAGGAGAGATTCGCGCGTCCAAGAGC 298
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TCCCAACCCGAATTCGGGCGGCGAAGTGGAGCTGGAGGAGAGATTCGTGCGTCCAAGAGC 299
Query 299 TTGATTGAGGATGAGGCAGAGCTTAGTGATTGGGTGAGCGATTTGAGGACTAGTTCGTTG 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGATTGAGGACGAGGCAGAGCTTAGTGATTGGGTGAGCGATTTGAGGACTAGTTCGTTG 359
Query 359 CGCGGGAAGTTCACGAGCGACGAAGATAACGCGGATCCAGAGGTGGTTCGTAGAAACGTA 418
|| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 360 CGTGGGAAGTTCACGAGTGACGAAGATAACTCGGCTCCAGAGGTGGTTCGTAGAAACGTA 419
Query 419 GACAGGGACACCAGTAGGGGTCCAAGGAGAGGAAGGGAAGGCCAATCTGATAGGTTCGGT 478
|||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 420 GACAGGGACAACAGTAGGGGTCCAAGGAGGGGAAGTGTAGGCCAATCTGATAGGTTCGGT 479
Query 479 GGTGCGAAAAGGGGAAAGGAAGGTGAAATGGATAGGTTTGGGAGTCCGAACAGGAGGAGA 538
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 480 GGTGCGAAAAGGGGAAAGGAAGGTGAGATGGATAGGTTTGGGAGTCCGAACCGGAGGAGA 539
Query 539 ACCAGCGGCGAGCCTGCTGATTCGTTCGGGAACAAGCGGTTAGGTGATCGAGAAGGTTCA 598
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 540 ACCAGCGGCGAGCCGGCTGATTCGTTTAGGAACAAGCGGTTAGGTGATCGAGAAGGTGCA 599
Query 599 AGGAACGGTCGTGTTCAAGGAAAGAGTAGTGAGTCGTCTTTTCGTGGAAGGAGTGATAGA 658
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 600 AGGAACGGTCGTGTCCAAGGAAAGAGTAGTGAGTCCTCTTTTCGTGGAAGGAATGATAGA 659
Query 659 AATGTAGATTCAGGGTCGTCTTTTCGTGGAAGGAGTGACAAAAATGTTGACTCAGGGTCG 718
|||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||
Sbjct 660 AATGTAGATTCAGGGTCGTCTTTTCGTGGAAGGAATGAGAGGAATGTAGATTCAGGGTCA 719
Query 719 TCTTTTCGTGGTAGGAATGATAGAAATGTAGATTCAGGGT 758
||||||||||| |||||||| || ||||||||||||||||
Sbjct 720 TCTTTTCGTGGAAGGAATGAGAGGAATGTAGATTCAGGGT 759
Score = 176 bits (95), Expect = 7e-43
Identities = 117/128 (91%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 715 GTCGTCTTTTCGTGGTAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 774
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTCCTCTTTTCGTGGAAGGAATGATAGAAATGTAGATTCAGGGTCGTCTTTTCGTGGAAG 691
Query 775 GAGTGATAGAAATGTAGACTCAGGGTCGTCTTTTCGTGGAAGGAGTGATAGAAATGTAGA 834
|| ||| || |||||||| |||||||| |||||||||||||||| ||| || ||||||||
Sbjct 692 GAATGAGAGGAATGTAGATTCAGGGTCATCTTTTCGTGGAAGGAATGAGAGGAATGTAGA 751
Query 835 CTCAGGGT 842
|||||||
Sbjct 752 TTCAGGGT 759
> Ahg940355 jgi|Araly1|940355|scaffold_600899.1
Length=1721
Score = 1943 bits (1052), Expect = 0.0
Identities = 1363/1510 (90%), Gaps = 33/1510 (2%)
Strand=Plus/Plus
Query 1090 TGATGAGCCTCTTATTAAGAAAGCGGCTTCTGCTAAGGCTGTTCAGACTGATAAGCCAAC 1149
|||||||||||||||||||||||| |||||| ||||| ||| | ||| | | || |
Sbjct 158 TGATGAGCCTCTTATTAAGAAAGCAGCTTCTACTAAGCCTG-T-AGA-TTCTCAG---A- 210
Query 1150 TGGTGAACATGTCAAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCC 1209
| || | | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 211 T--TG--C---T-AAAACTTCAGATTCTTACTTGTCAAAGACAAGATTTGATCAGTTCCC 262
Query 1210 ACTCTCTCCCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGT 1269
||| ||||||||||||||||||| || |||||| |||||| ||||||||||||||||
Sbjct 263 ACTGTCTCCCTTATCGCTAAAAGGAATTGTGGATGCTGGATTTAAGACAATGACTGTTGT 322
Query 1270 GCAGGAGGCTACTCTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAAC 1329
|||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 323 TCAGGAGGCTACTCTTCCTCTCATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAAC 382
Query 1330 AGGCACTGGTAAAACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCC 1389
||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 383 AGGCACTGGGAAAACCGTTGCTTTTTTGCTTCCATCAATTGAAGCTGTTATCAAATCTCC 442
Query 1390 TCCTGCAAGCCGGGATAGTAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCG 1449
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 443 TCCTGCAAGCCGGGATAATAGGCATCCCCCAATTATTGTCCTTGTGGTATGTCCTACTCG 502
Query 1450 GGAACTTGCCAGTCAAGCTGCGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTAT 1509
||||||||| |||||||||| ||||||||||| | ||| || ||||||||||| |||||
Sbjct 503 GGAACTTGCTTGTCAAGCTGCTGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTAT 562
Query 1510 TGGTGTTCAAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCG-TATGCAAA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 563 TGGTGTTCAAGTTGTGATTGGAGGCACAAAGCTTCCTACAGAGCAAAGGCGCT-TGCAAA 621
Query 1569 CGAATCCTTGCCAGATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACA 1628
|| ||| |||||||| || ||||||||||| |||||||||||||||||||| || ||||
Sbjct 622 AGAGTCCATGCCAGATTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACA 681
Query 1629 CTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATC 1688
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 682 CTTCTGGATTTGCAACAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATC 741
Query 1689 ATCTCTTGGACATGGGTTTCCGAAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGC 1748
|||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||
Sbjct 742 ATCTTTTGGACATGGGTTTCCGAAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGC 801
Query 1749 AGAGACAAACATTTTTATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCCATG 1808
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct 802 AGAGACAAACCTTTTTATTTTCCGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATG 861
Query 1809 TTGCTCTGAAACGGGATCATGAGTTCATCAATTGTGTCCAAGAGGGCT-CTGGGGAGACA 1867
|||||||||||||||||||||| ||| |||||||||| |||||||| | ||||||||||
Sbjct 862 TTGCTCTGAAACGGGATCATGAATTCGTCAATTGTGTTCAAGAGGG-TGCTGGGGAGACG 920
Query 1868 CATCAAAAGGTCACACAAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCTA 1927
|||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 921 CATCAAAAGGTCTCACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTT 980
Query 1928 CATG-TGCTTCTTAAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTG 1986
||| | ||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 981 TATGGT-CTTCTGAAAAAACACATCGCAGATAATGTGGGCTATAAGGTTATTATTTTCTG 1039
Query 1987 TACAACTGCTATGGTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAGCCTGAACGT 2046
||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1040 TACAACTGCTATGGTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGT 1099
Query 2047 CAGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCG 2106
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1100 CAGAGAGATCCATTCTAGAAAACCACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCG 1159
Query 2107 CAAGTCCAAG-GCTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACC 2165
|||||| ||| | ||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 1160 CAAGTCTAAGAG-TATTATCCTTGTAACATCCGATGTATCTGCTCGTGGTGTTGATTACC 1218
Query 2166 CTGATGTGTCATTGGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATA 2225
||||||||||| | ||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 1219 CTGATGTGTCACTAGTCGTGCAGATGGGATTGCCATCAGACAGGGAACAATATATCCATA 1278
Query 2226 GACTTGGCAGAACCGGGCGGAAAGGGAAGGAAGGGGAAGGAGT-CTTATTGTTGGCACCA 2284
||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||||
Sbjct 1279 GACTTGGCAGAACTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACT-ATTGTTGGCACCG 1337
Query 2285 TGGGAAGAGTACTTTATGTCATCTGTTAAAGACTTGCCCATCACCAAGTC-TCCACTACC 2343
||||||||||| ||| | || ||||||||||||||||||||||| ||||| || ||||
Sbjct 1338 TGGGAAGAGTATTTTCTATCTTCTGTTAAAGACTTGCCCATCACAAAGTCGTCTT-TACC 1396
Query 2344 GCCAATAGACCCA-GAGGCTGTGAAAAGGGTGCAGAAAGGGCTGAGCCAAGTGGAAATGA 2402
|||||| || | | ||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1397 GCCAATTGATC-ATGAGGCTGTGAAAAAGGTGCAGAAAGGGCTTATCCAAGTGGAAATGA 1455
Query 2403 -AGAACAAGGAGGCGGCGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATT 2461
| ||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1456 CA-AACAAAGAGGCGGCATATCAGGCCTGGTTGGGTTACTACAAATCTCAGAAGAAGATT 1514
Query 2462 GCAAGAGACACGACCAGACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTT 2521
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1515 GCAAGAGACACGACCAGACTGGTGGAGTTAGCCAATGAGTTTAGCCGCAGCATGGGACTT 1574
Query 2522 -GACAGCCCACCAGCTATCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCC 2580
| | ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1575 AGT-ATCCCTCCAGCTATCCCTATAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCC 1633
Query 2581 TGGTCTTAGA 2590
|||| |||||
Sbjct 1634 TGGTATTAGA 1643
> Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896
Length=2166
Score = 1373 bits (743), Expect = 0.0
Identities = 1215/1443 (84%), Gaps = 32/1443 (2%)
Strand=Plus/Plus
Query 1172 GATTCTTACTTGTCTAAGACAAGATTTGATCAAT-TCCCACTCTCTCCCTTATCGCTAAA 1230
|||||||| ||| ||||||||||||||||||| | | ||| | |||||||||||||||||
Sbjct 739 GATTCTTATTTGACTAAGACAAGATTTGATCAGTAT-CCATTGTCTCCCTTATCGCTAAA 797
Query 1231 AGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTAT 1290
||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 798 AGCCATCAAGGATGCTGGATACGAGACAATGACTGTTGTGCAGGAAGCTACTCTCCCTAT 857
Query 1291 CATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGTAAAACCGTTGC 1350
|||||| ||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct 858 AATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 917
Query 1351 ATTTTTGCTTCCAGCAATTGAAGCT-GTTATCAAATCTCCTCCTGCAAGCCGGGATAGTA 1409
|||||||||||| ||||||||| | ||| |||||||||||||| |||||| ||||| ||
Sbjct 918 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAATA 976
Query 1410 GGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGTCAAGCTG 1469
|| |||||||||| ||| ||||||| |||| || ||| | |||||||||| ||||||||
Sbjct 977 AGCGACCCCCAATTCTTGCGCTTGTGATATGCCCAACTAGAGAACTTGCCAATCAAGCTG 1036
Query 1470 CGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTATTGGTGTTCAAGTTGTGATTG 1529
| |||| ||||| ||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 1037 CAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGATTG 1096
Query 1530 GAGGCACAA-AGCTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTTGCCAGATCCTT 1588
||||||||| | ||| | |||||||| || ||||||||| |||||||||||||| ||
Sbjct 1097 GAGGCACAAGA-CTTGGTTTAGAGCAAAAGCTTATGCAAACAAATCCTTGCCAGATT-TT 1154
Query 1589 -GTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAG 1647
|||||||||||||||||||||||||||||||| || ||||| | || || ||||||||
Sbjct 1155 AGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACAAG 1214
Query 1648 ATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATCATCTCTTGGACATGGG-TT 1706
|| | |||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 1215 GTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGACATGGGCTT 1274
Query 1707 TC-CGAAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGCAGAGACAAACATTTT-T 1764
|| | |||| ||||||||||||||||| |||||||||||||| |||||||||| |||| |
Sbjct 1275 TCGC-AAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTTTCT 1331
Query 1765 ATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCC-ATGTTGCTCTGAAACGGG 1823
|||||||||||| |||||||||||||| ||||||||||||| | |||||||||| ||||
Sbjct 1332 ATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCCTA-GTTGCTCTGAGGCGGG 1390
Query 1824 ATCATGAGTTCATCAATTGTGTCCAAGAGGGCTCTGGGGAGACACATCAAAAGGTCACAC 1883
|||| ||||| |||||||||| || || ||| || ||||| |||||| |||||| ||
Sbjct 1391 ATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCAGAC 1450
Query 1884 AAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCT--ACATGTGCTTCTTAA 1941
||||| |||||||||||||||| || |||||||| || ||| | ||| ||||||
Sbjct 1451 AAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTGTACACA--CTTCTTCG 1508
Query 1942 AGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATGGT 2001
||||||| ||||| || ||||||||||| || | |||||||||||||| |||||
Sbjct 1509 CCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGTACAACTGCCATGGT 1568
Query 2002 GACAAGATTGGTGGCTGATCTGCTTAG-TCAGCTAAGCCTGAACGTCAGAGAGATCCATT 2060
|||| ||| || |||||||| || || | || ||| | | || || |||||||||||||
Sbjct 1569 TACAAAATTAGTTGCTGATCTACT-AGGTGAGATAAACTTAAATGTGAGAGAGATCCATT 1627
Query 2061 CTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGGCTA 2120
|||||||||||||||||||||| || || |||||| |||||||||| || ||||||| |
Sbjct 1628 CTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGAAAATCCAAGGGT- 1686
Query 2121 TT-ATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCA-TT 2178
|| || || || |||||||||||||||||||| || || ||||||||||||||| | ||
Sbjct 1687 TTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCTGATGTGACCCTT 1746
Query 2179 GGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAAC 2238
| | ||||| ||||||||||| |||||| || || |||||||| |||||||| |||||
Sbjct 1747 GTTT-TACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAAC 1805
Query 2239 CGGGCGGAAAGGGAAGGAAGGGGAAGGAGTCTTATTGTTGGCACCATGGGAAGAGTACTT 2298
||| | ||||| |||||||| ||||| | || ||||||||||||||||| || |||||
Sbjct 1806 GGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGGGAGGAATACTT 1865
Query 2299 TATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAGA 2358
| | |||||| | ||||| || |||||||| |||||||| || || |||||||||||||
Sbjct 1866 TCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCAGA 1925
Query 2359 GGCTGTGAAAAGGGTGCAGAAAGG-GCTGAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2417
|||| |||| |||||| ||||| ||| |||| || || |||| ||||||||||||||
Sbjct 1926 AACTGTAAAAAAGGTGCA-AAAGGCGCTTTGCCATGTTGAGATGAGGAACAAGGAGGCGG 1984
Query 2418 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACAC-GACC 2476
|||||||||| ||||||||||||||||| || ||||||||||||| |||||||| |||
Sbjct 1985 CGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAGAC- 2043
Query 2477 AGACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCT 2536
|| || |||||| |||| || |||||||| || || ||||||||||||| || ||||||
Sbjct 2044 AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCCTCCAGCT 2103
Query 2537 ATCCCCAAAAATG-TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAA 2595
|| || |||| | ||||||| ||||||||||||||||| ||||||||||| ||| ||||
Sbjct 2104 ATACC-AAAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTCAGAGCCAA 2162
Query 2596 GTA 2598
|||
Sbjct 2163 GTA 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103948278605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5