BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08620.1
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940355 jgi|Araly1|940355|scaffold_600899.1 2684 0.0
Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1 2006 0.0
Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896 1282 0.0
> Ahg940355 jgi|Araly1|940355|scaffold_600899.1
Length=1721
Score = 2684 bits (1453), Expect = 0.0
Identities = 1642/1731 (95%), Gaps = 22/1731 (1%)
Strand=Plus/Plus
Query 64 TCTTTTCTCCACTCGTTGGCATGAATTCCGATGGACCCAAATCCGGTAAGAAGAGACGAG 123
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTTCTCCTCTTGTTTCCATGAATTCCGATGGACCCAAATCCGGTAAGAAGAGACGAG 60
Query 124 AGATTCGTGCTAAAC-TTGTGAAGAAGTTGACGAGTGACGAAGATGGCTCGGGAAAGCTA 182
||||||| ||||||| || |||||||||| |||||||||||||| | | |
Sbjct 61 AGATTCGCGCTAAACATT-TGAAGAAGTTAACGAGTGACGAAGA----T-------G--A 106
Query 183 GTCAAGGACAACAATAAGAGTCTAAAGAGGGGAAGAGAAGGCAAATCTGATGTTGATGAG 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 107 --CAAGGACAACAATAAGGGTCTAAAGAGGGGAAGAGAAGGCAAATCTGATGTTGATGAG 164
Query 243 CCTCTTATTAAGAAACCAGCTTCTACTACGCCTCTAG-TGACTCAAATTGCTAAAACTTC 301
||||||||||||||| |||||||||||| |||| ||| | |||| ||||||||||||||
Sbjct 165 CCTCTTATTAAGAAAGCAGCTTCTACTAAGCCTGTAGAT-TCTCAGATTGCTAAAACTTC 223
Query 302 AGATTCTTATTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTAACGTTAAA 361
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 224 AGATTCTTACTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTATCGCTAAA 283
Query 362 AGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 421
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 AGGAATTGTGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 343
Query 422 CATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAAACAGTTGC 481
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 344 CATTCTCCAAGGTAAAGATATCCTTGCCAAGGCCAAAACAGGCACTGGGAAAACCGTTGC 403
Query 482 ATTTTTGCTTCCATCAATTGAAGCTGTTATCAAAGCTCCTCCTGCAAGCCGTGATAATAG 541
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 404 TTTTTTGCTTCCATCAATTGAAGCTGTTATCAAATCTCCTCCTGCAAGCCGGGATAATAG 463
Query 542 GCATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGCTGC 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GCATCCCCCAATTATTGTCCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGCTGC 523
Query 602 TGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTGG 661
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGCAGAGGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGATTGG 583
Query 662 AGGCACTAAGCTTCCTACGGAGCAAAGGCGCTTGCAAAAGAGTCCTTGCCAGATTCTCGT 721
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 584 AGGCACAAAGCTTCCTACAGAGCAAAGGCGCTTGCAAAAGAGTCCATGCCAGATTCTCGT 643
Query 722 GGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAACAAGGTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAACAAGGTT 703
Query 782 GATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGGTTTCCG 841
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 704 GATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTGGACATGGGTTTCCG 763
Query 842 AAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATTTTTATTTTC 901
|||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 764 AAGGGAGATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACCTTTTTATTTTC 823
Query 902 CGCCACAGTATCTGATGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACGGGATCATGA 961
|||||| ||| |||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 824 CGCCACTGTACCTGAAGAAGTCCGCCAAATGTGCCATGTTGCTCTGAAACGGGATCATGA 883
Query 962 ATTCGTCAACTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTTTCACAAATGTA 1021
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 884 ATTCGTCAATTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTCTCACAAATGTA 943
Query 1022 CATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGTCTTCTGAAAAAACACAT 1081
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 944 CATGATTGCATCATTAGATAGACATTTCTCGCTTCTTTATGGTCTTCTGAAAAAACACAT 1003
Query 1082 CACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGGTTACAAGATT 1141
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CGCAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGGTTACAAGATT 1063
Query 1142 GGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCATTCTAGAAAACC 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCATTCTAGAAAACC 1123
Query 1202 GCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAGTATTATCCTTGT 1261
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1124 ACAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCTAAGAGTATTATCCTTGT 1183
Query 1262 GACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTC-CTTAGTCGTACAGA 1320
||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1184 AACATCCGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCACT-AGTCGTGCAGA 1242
Query 1321 TGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAACTGGGCGGAAAG 1380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1243 TGGGATTGCCATCAGACAGGGAACAATATATCCATAGACTTGGCAGAACTGGGCGGAAAG 1302
Query 1381 GTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACTTTCTATCTTCTG 1440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1303 GTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTATTTTCTATCTTCTG 1362
Query 1441 TTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACCATGAGGCTGTGAAAA 1500
|||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1363 TTAAAGACTTGCCCATCACAAAGTCGTCTTTACCGCCAATTGATCATGAGGCTGTGAAAA 1422
Query 1501 AGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACGAACAAGGAGGCGGCATATCAGGCAT 1560
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1423 AGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACAAACAAAGAGGCGGCATATCAGGCCT 1482
Query 1561 GGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACACGACCAGACTGGTGGAGT 1620
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1483 GGTTGGGTTACTACAAATCTCAGAAGAAGATTGCAAGAGACACGACCAGACTGGTGGAGT 1542
Query 1621 TAGCTAATGAGTTTAGCCGCAGTATGGGACTTAGCATCCCTCCGGCTATCCCTGTAAATA 1680
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||
Sbjct 1543 TAGCCAATGAGTTTAGCCGCAGCATGGGACTTAGTATCCCTCCAGCTATCCCTATAAATG 1602
Query 1681 TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGAGTCGCTCCAGGTTTTGACA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGAGTCGCTCCAGGTTTTGACA 1662
Query 1741 AGAAACCTGCAAAGAGAAATTATCGTTCCCGCTAGA-TTTTCTCTTTCTTT 1790
|||||| | ||||||||||| ||||||||||||||| |||| ||||| |||
Sbjct 1663 AGAAACATACAAAGAGAAATAATCGTTCCCGCTAGACTTTTTTCTTTTTTT 1713
> Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1
Length=2540
Score = 2006 bits (1086), Expect = 0.0
Identities = 1320/1434 (92%), Gaps = 12/1434 (1%)
Strand=Plus/Plus
Query 294 AAAACTTCAGATTCTTATTTGTCAAAGACAAGATTTGATCAGTTCCCACTGTCTCCCTTA 353
||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 996 AAAACTTCAGATTCTTACTTGTCTAAGACAAGATTTGATCAATTCCCACTCTCTCCCTTG 1055
Query 354 ACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACT 413
|| |||||| || ||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 1056 TCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACT 1115
Query 414 CTTCCTCTCATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAA 473
|||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1116 CTTCCTATCATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGGAAA 1175
Query 474 ACAGTTGCATTTTTGCTTCCATCAATTGAAGCTGTTATCAAAGCTCCTCCTGCAAGCCGT 533
|| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 1176 ACCGTTGCATTTTTGCTTCCAGCAATTGAAGCTGTTATCAAATCTCCCCCTGCAAGCCGG 1235
Query 534 GATAATAGGCATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGT 593
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1236 GATAATAGGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGT 1295
Query 594 CAAGCTGCTGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTT 653
|||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1296 CAAGCTGCGGCAGAAGCAAACACCTTGCTGAAGTATCACCCATCTATTGGTGTTCAAGTT 1355
Query 654 GTGATTGGAGGCACTAAGCTTCCTACGGAGCAAAGGCGCT-TGCAAAAGAGTCCTTGCCA 712
||||||||||| || || |||||||| ||||||||||| | |||||| || |||||||||
Sbjct 1356 GTGATTGGAGGTACAAAACTTCCTACAGAGCAAAGGCG-TATGCAAACGAATCCTTGCCA 1414
Query 713 GATTCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGC 772
||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1415 GATCCTTGTGGCTACACCCGGAAGGCTCAAAGACCATATTGAGAACACTTCTGGATTTGC 1474
Query 773 AACAAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACAT 832
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 AACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACAT 1534
Query 833 GGGTTTCCGAAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATT 892
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1535 GGGTTTCCGAAGGGATATTGAGAGGATAATAGCTGCTGTCCCTAAGCAGAGACAAACATT 1594
Query 893 TTTATTTTCCGCCACAGTATCTGATGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACG 952
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1595 TTTATTTTCCGCCACTGTACCTGAAGAGGTCCGCCAAATATGCCATGTTGCTCTGAAACG 1654
Query 953 GGATCATGAATTCGTCAACTGTGTTCAAGAGGGTG-CTGGGGAGACGCATCAAAAGGTTT 1011
||||||||| ||| |||| |||||||||||||| | |||||||||| |||||||||||
Sbjct 1655 GGATCATGAGTTCATCAATTGTGTTCAAGAGGG-GACTGGGGAGACACATCAAAAGGTCA 1713
Query 1012 CACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGT-CTTCTG 1070
||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||
Sbjct 1714 CACAAATGTACATGATTGCATCACTGGATAGACATTTCTCGCTTCTATAT-GTGCTTCTT 1772
Query 1071 AAAAAACACATCACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATG 1130
||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1773 AAAGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATG 1832
Query 1131 GTTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAACGTCAGAGAGATCCAT 1190
|| |||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||
Sbjct 1833 GTGACAAGATTGGTGGCTGATCTGCTTAGTCAGCTAAACCTGAACGTCAGAGAGATCCAT 1892
Query 1191 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAG- 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1893 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAG-GC 1951
Query 1250 TATTATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTT 1309
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1952 TATTATCCTTGTCACATCTGATGTATCTGCTCGTGGTGTCGATTACCCTGATGTGTCATT 2011
Query 1310 AGTCGTACAGATGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAAC 1369
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2012 AGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAAC 2071
Query 1370 TGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACTT 1429
|||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||
Sbjct 2072 GGGGCGGAAAGGTAAGGAAGGGGAAGGAGTATTATTGTTGGCACCATGGGAAGAGTACTT 2131
Query 1430 TCTATCTTCTGTTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACC-ATG 1488
| | || |||||||| |||||||||||||| |||||| | ||||||||||||||| | |
Sbjct 2132 TATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCA-G 2190
Query 1489 AGGCTGTGAAAAAGGTGCAGAAAGGGCTTATCCAAGTGGAAATGACGAACAAGGAGGCGG 1548
|||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 2191 AGGCTGTGAAAAGGGTGCAGAAAGGGCTAAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2250
Query 1549 CATATCAGGCATGGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACACGACCA 1608
| |||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 2251 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACACGACCA 2310
Query 1609 GACTGGTGGAGTTAGCTAATGAGTTTAGCCGCAGTATGGGACTT-AGCATCCCTCCGGCT 1667
||||||||||||| || ||||||||||||||||| ||||||||| | || ||| || |||
Sbjct 2311 GACTGGTGGAGTTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGA-CAGCCCACCAGCT 2369
Query 1668 ATCCCTGTAAATATTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAGA 1721
||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2370 ATCCCCAAAAATGTTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGA 2423
> Ahg918145 jgi|Araly1|918145|Al_scaffold_0008_2896
Length=2166
Score = 1282 bits (694), Expect = 0.0
Identities = 1200/1442 (83%), Gaps = 44/1442 (3%)
Strand=Plus/Plus
Query 303 GATTCTTATTTGTCAAAGACAAGATTTGATCAGT-TCCCACTGTCTCCCTTAACGTTAAA 361
|||||||||||| | ||||||||||||||||||| | ||| ||||||||||| || ||||
Sbjct 739 GATTCTTATTTGACTAAGACAAGATTTGATCAGTAT-CCATTGTCTCCCTTATCGCTAAA 797
Query 362 AGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 421
|| || |||||||||||| |||||||||||||||| ||||| |||||||| ||| |
Sbjct 798 AGCCATCAAGGATGCTGGATACGAGACAATGACTGTTGTGCAGGAAGCTACTCTCCCTAT 857
Query 422 CATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAAACAGTTGC 481
|||||| ||||||||||| |||| || |||||||||||||| ||||||||||| || ||
Sbjct 858 AATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 917
Query 482 ATTTTTGCTTCCATCAATTGAAGCT-GTTATCAAAGCTCCTCCTGCAAG-CCGTGATAAT 539
|||||||||||||||||||||| | ||| ||||| |||||||| |||| ||| ||||||
Sbjct 918 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCG-GATAAT 975
Query 540 AGGC-ATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGC 598
| || | ||||||||| ||| ||||||| |||| || ||| | |||||||| ||||||
Sbjct 976 AAGCGA-CCCCCAATTCTTGCGCTTGTGATATGCCCAACTAGAGAACTTGCCAATCAAGC 1034
Query 599 TGCTGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGAT 658
||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1035 TGCAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGAT 1094
Query 659 TGGAGGCACTAAG-CTTCCTACGGAGCAAAGGCGCT-TGCAAA-AGAGTCCTTGCCAGAT 715
||||||||| ||| ||| | ||||||| || | |||||| | | ||||||||||||
Sbjct 1095 TGGAGGCAC-AAGACTTGGTTTAGAGCAAAAGC-TTATGCAAACA-AATCCTTGCCAGAT 1151
Query 716 TCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAAC 775
| | ||||||||||| ||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 1152 TTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAAC 1211
Query 776 AAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGG 835
|||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1212 AAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGACATGGG 1271
Query 836 -TTTC-CGAAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATTT 893
|||| | |||| | ||||||||||||||| | |||||||||||| |||||||||| |||
Sbjct 1272 CTTTCGC-AAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTT 1328
Query 894 T-TATTTTCCGCCACAGTATCTGATGAGGTCCGCCAAATATGCC-ATGTTGCTCTGAAAC 951
| ||||||| ||||||||| |||| ||||| ||||||||||||| | |||||||||| |
Sbjct 1329 TCTATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCCTA-GTTGCTCTGAGGC 1387
Query 952 GGGATCATGAATTCGTCAACTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTTT 1011
||||||| || || ||||| |||||||| || || || |||||||||||| ||||
Sbjct 1388 GGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCA 1447
Query 1012 CACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGTCTTCTGA 1071
||||||| |||||||||||||| |||| ||||||||||| ||| | || |||||
Sbjct 1448 GACAAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTGTACACACTTCTTC 1507
Query 1072 AAAAACACATCACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGG 1131
||||||| | ||||| || | ||||||||| ||| | |||||||||||||| ||||
Sbjct 1508 GCCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGTACAACTGCCATGG 1567
Query 1132 TTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAAC-GTCAGAGAGATCCAT 1190
|||||| ||| || |||||||| || ||| || ||| | |||| || ||||||||||||
Sbjct 1568 TTACAAAATTAGTTGCTGATCTACTAGGTGAGATAAAC-TTAAATGTGAGAGAGATCCAT 1626
Query 1191 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAGT 1250
||||||||||||||||||||||| || || |||||| |||||||||| || |||||| ||
Sbjct 1627 TCTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGAAAATCCAAGGGT 1686
Query 1251 ATT-ATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCC-T 1308
|| || || || |||||||||||||||||||| || || ||||||||||||||| || |
Sbjct 1687 -TTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCTGATGTGACCCT 1745
Query 1309 TAGTCGTACAGATGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAA 1368
| || ||||| ||||||||||| |||||| |||||||||||||| |||||||| ||||
Sbjct 1746 T-GTTTTACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAA 1804
Query 1369 CTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACT 1428
| ||| | ||||| |||||||||||||| || | ||||||||||| ||||| || ||||
Sbjct 1805 CGGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGGGAGGAATACT 1864
Query 1429 TTCTATCTTCTGTTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACC-AT 1487
||||||| ||| | || || || |||||||| |||||| || | || ||||||||| |
Sbjct 1865 TTCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCA- 1923
Query 1488 GAGGCTGTGAAAAAGGTGCAGAAAGG-GCTTAT-CCAAGTGGAAATGACGAACAAGGAGG 1545
|| |||| ||||||||||| ||||| |||| | ||| || || |||| |||||||||||
Sbjct 1924 GAAACTGTAAAAAAGGTGCA-AAAGGCGCTT-TGCCATGTTGAGATGAGGAACAAGGAGG 1981
Query 1546 CGGCATATCAGGCATGGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACAC-G 1604
|||| |||||||| ||||||||||||||||| || ||||||| ||||| ||||||| |
Sbjct 1982 CGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAG 2041
Query 1605 ACCAGACTGGTGGAGTTAGCTAATGAGTTTAGCCGCAGTATGGGACTT-AGCA-TCCCTC 1662
|| || || |||||||| || || |||||||| || |||||||||||| | || ||| ||
Sbjct 2042 AC-AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGA-CAATCC-TC 2098
Query 1663 CGGCTATCCCTGTAAA-T-ATTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAG 1720
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Sbjct 2099 CAGCTATACCA--AAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTCAG 2156
Query 1721 AG 1722
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Sbjct 2157 AG 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70885945945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5