BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08630.1
Length=2672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940356 jgi|Araly1|940356|scaffold_600900.1 3683 0.0
> Ahg940356 jgi|Araly1|940356|scaffold_600900.1
Length=2209
Score = 3683 bits (1994), Expect = 0.0
Identities = 2139/2210 (97%), Gaps = 5/2210 (0%)
Strand=Plus/Plus
Query 190 GTTTTGCCATTTGAAGGATGCCTCTACTAAAAAAGAAGTCACATAAACTACTGGAGCCCC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GTTTTGCCATTTGAAGGATGCCTCTACTAAAAAAGAAGTCACATAAACTACTGGAGCCCC 63
Query 250 CAAAGAACTTGGAGCCTCAAGAACTTGTCTATCAAGTTCGTCTAACAAATGAGATCTTTC 309
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 64 CAAAGAACTTGGAGCCTCAAGAACTTGTCTATCAAGTTCGTCTAACAAAGGAGATCTTTC 123
Query 310 GAGATTATCAATTGTACTTGAAGAGGTTAAATCTGTATCGCAACCGAGTTTGGACTTGTA 369
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 124 GAGATTATCAATTGTACTTGAAGAGGATAAATCTGTATCGCAACCGAGTTTGGACATGTA 183
Query 370 AGTCTACTGGTAAAACTAGCTTGAGCTACGAGGAGGCCTTAGATTCAGAAAAACTGGCAG 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGTCTACTGGTAAAACTAGCTTGAGCTACGAGGAGGCCTTAGATTCAGAAAAACTGGCAA 243
Query 430 GCAAGAAGGTTCAAACTCTGCCCAGAGAGCTAGTTGCACCTGCTTTACGCATCATCCAAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GCAAGAAGGTTCAAACTCTGCCCAGAGAGCTAGTTGCACCTGCTTTACGCATCATCCAAT 303
Query 490 TCAGTACGCTTTCATTGAAAGATCTTGCTGACAAAATAGCGACAGAGTTGCAAGATTGCT 549
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 304 TCAGTACGCTCTCATTGAAAGATCTTGCTAACAAAATAGCGACAGAGTTGCAAAATTGCT 363
Query 550 TTTTCCCTGGCGCAGAGTTGTATGGGGAAAGGGATGGGGAACTGCATCCTTGCAAAATCT 609
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 364 TTTTCGCTGGCGCAGAGTTGTATGGGAAAAGGGATGAGGAACTGCATCCTTGCAAAATCT 423
Query 610 TGAGGATAGTATCAGATGGGGATAGTAAACCTCAGTATGAGGTAGGCTTCCTTGACAAAA 669
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGAGGATAGTAACAGATGGGGATAGTAAACCTCAGTATGAGGTAGGCTTCCTTGACAAAG 483
Query 670 ACAAGGAAGTAGATGATAACACAGTGCTCTTTGGGGAGGATCTGTCATGGAAGAAGTTTC 729
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ACAAGGAAATAAATGAGAACACAGTGCTCTTTGGGGAGGATCTGTCATGGAAGAAGTTTC 543
Query 730 CATTTAGTAGAAATTTTCTGAAGTCCTTCATTCGAGATTCCACATGCCACAGTATACCTT 789
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 544 CATTTAGTAGAAATTTTCTGAAGTCTTTCATTCGGGATTCCACATGCCACAGTATACCTT 603
Query 790 GGGTAGTAAATGATTACCTGGCTAAAGCACATGAAATCACGAGAAAGATTCCCAAGGAAC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GGGTAGTAAATGATTACCTGGCTAAAGCACATGAAATCACGAGAAAGATTCCCAAGGAAC 663
Query 850 TTCAGAACAAATATGTCTTTCAGAATGGAGAACTGGTTCAACaaaggaagcaggaagata 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTCAGAACAAATATGTCTTTCAGAATGGAGAACTGGTTCAACAAAGGAAGCAGGAAGATA 723
Query 910 aaaccggaagggaaaatag-aaaaagaaagagagcagaaaaTGGTAAACATGTTGCAGAG 968
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAACCGGAAGGGAAAA-AGGAAAAAGAAAGAGAGCAGAAAATGGTAAACATGTTGCAGAG 782
Query 969 GAGACAGATAGAGAGGTTAATGGGTCTGAGGAAGAGGCTATCAATTACCCAATCGAAGAT 1028
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 783 GAGACAGATAGAGAGGTTAATGGTTCCGAGGAAGAGGCTATCAATTACCCAATCGAAGAT 842
Query 1029 TTACTTTTGCCACCTGATCCTGATGTCACTCAGCGTCCTTCTCCTTCCCGGGATTTTAGT 1088
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 843 TTACTGTTGCCACCTGATCCTGATGTCACTCAGCGTCCTTCTCCTTCGCGGGATTTTAGT 902
Query 1089 GTTCCTATGGATTGTGTTGGGGATCTTCTTATGGTCTGGGACTTTTGTACCTCATTTGGT 1148
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GTTCCAATGGATTGTGTTGGGGATCTTCTTATGGTCTGGGACTTTTGTACCTCATTTGGT 962
Query 1149 AGGCAGCTGCATCTATGGCGATTTTCTCTTGAAGACTTTGAAAATGCTGTCTGCCACAAG 1208
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGGCAGCTGCATCTATGGAGATTTTCTCTTGAAGACTTTGAAAATGCTGTCTGCCACAAG 1022
Query 1209 GAGAGTAATTTGGTTCTTATCATGGAAGTGCATGCCTCTCTTTTTCGGTTCCTCATCAAT 1268
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1023 GAGAGTAATTTGGTTCTGATCATGGAAGTGCATGCCTGTCTTTTTCGGTTCCTCATCAAT 1082
Query 1269 GAACGTGGTGATAGTTTCAAAGCTTTACAGAGAAGGAGTCGCAAGTCGAAGATAACATTG 1328
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1083 GAACGTGGTGATAGTTTCAAAACTTTACAGAGAAGGAGTCGCAAGTCAAAGATAACATTG 1142
Query 1329 ATCACGTGGGCAGAGTATCTTTGTGATTTCCTGGAATCAGTCAACACTCCTGATTTGTGC 1388
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1143 ATCACATGGGCAGAGTATCTTTGTGATTTCTTGGAATCAGTCAACACTCCTGATTTGTGC 1202
Query 1389 TTCGATGTTGGAACGATCAAACGTGGACATTATGGTCTCTTGGACCCAAATGTAAAATTG 1448
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1203 TTCGACGTTGGAACGATCAAACGTGGACATTATGGTCTATTGGACCCAAATGTAAAATTG 1262
Query 1449 AAAATCTTAAGGGAATTAGTGAACCATATAACCGAAACAGGTATGTTCAAGGGGGAAATA 1508
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1263 AAAATCTTAAGGGAATTAGTGAACCATATAACTGAAACAAGTATGTTCAAGGGGGAAATA 1322
Query 1509 GATGAGCTTGTTGAACAACGGCATGCCCTTGGAGCTGCTAGAAGAGAAGAAGCATTGGCG 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GATGAGCTTGTTGAACAACGGCATGCCCTTGGAGCTGCTAGAAGAGAAGAAGCATTGGCG 1382
Query 1569 GAGGCCCGACAGATAAGAGAGGAGAAAGAACGGTCCAAAACTGGTGAGGAAGCTAATGGA 1628
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1383 GAGGCCCGACAGATAAGAGAGGAGAAAGAACGGTCCAAAACTGGCGAGGAAGCTAATGGA 1442
Query 1629 GTTTTAGACAATAATAGGTTGGAGAAAAAGAAAAATAGCGCACAAGTATTAGAAAGCAGT 1688
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1443 TTTTTAGACAATAATAGGTTGGAGAAAAAGAAAAACAGCCCACCAGTATTAGAAAGCAGT 1502
Query 1689 GAAGACAGCAAAAAGAATGAGAGCACTGCAGGGGGAAGCAAGATGGAGAATGGGTCTGTT 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 GAAGACAGCAAAAAGAATGAGAGCACTGCAGGGGGAAGCAAGATGGAGAATGGGTCTGTT 1562
Query 1749 TCTTCGGAAAACATTGAAAAATCAGAGAAAAGGCTTATAGGGAATGTCTATCTGAGAAAG 1808
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1563 TCTTCGGAAAAAATTGAAAAATCAGAGAAAAGGCTTATGGGGAATGTCTATCTGAGAAAG 1622
Query 1809 CACAAAAGGCAGATGACGGATACAAAAATCGAACCaaaagaggaggaggaggatgagaaa 1868
|||||||||||||||| |||||||||||||||||| |||||||| || | |||||| |
Sbjct 1623 CACAAAAGGCAGATGATGGATACAAAAATCGAACCTAAAGAGGA--AG-ATGATGAGGAG 1679
Query 1869 gcagaggaggacgaagaggagaaaggaTTTTCAGTGAAGAAGCAGGAGGTAAAATCTGCA 1928
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1680 GCGGAGGAGGAAGAAGAGGAGAAAGGATTTTCGGTGAAGAAGCAGGAGGTAAAATCAGCA 1739
Query 1929 AGCGAAGATGAGAAAGGAACTTTTGAAAGGAGGGGGCCCGAACAGAGGAGGCAATATTAT 1988
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1740 AGCGAAGATGAGAAAGGAACTTCAGAAAGGAGGGGGCCCGAACAGAGGAGGCAATATTAT 1799
Query 1989 GAGCGGGAGATGGAGAAAATAGTCATACGTACAAACCCCTTGGGTAAAGATCGGGACTAC 2048
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1800 GAACGAGAGATGGAGAAAATAGTCATACGTACAAACCCCTTGGGTAAAGATCGGGATTAC 1859
Query 2049 AACAGGTACTGGTGGTTCCGAAGCAATGGGAGAATATTTGTTGAGAATTCTGATTCCGAA 2108
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||
Sbjct 1860 AACAGGTACTGGTGGTTCCGAAGCAATGGAAGGATATTTGTTGAGGATTCTGATTCCAAA 1919
Query 2109 GAATGGGGCTATTATACCGCCAAGGAAGAGCTGGATGCATTGATGGGGTCACTAAACCGT 2168
|||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1920 GAATGGGGTTATTATACCTCCAAGGAAGAGCTCGATGCATTGATGGGATCACTAAACCGT 1979
Query 2169 AAAGGAGAGAGGGAACTGTCATTATATACACAACTAGAGATATTCTATGACAGAATATGC 2228
|||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1980 AAAGGAGAGAGGGAACTGTCATTACATACACAGCTAGAGACATTCTATGACAGAATATGC 2039
Query 2229 TCTACACTACAAAAGAGGACGAAGGACATTGCTCACAACATAGAAATGGAAGAAGCAGTG 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TCTACACTACAAAAGAGGACGAAGGACATTGCTCACAACATAGAAATGGAAGAAGCAGTG 2099
Query 2289 GTTAGGAGATCTACCCGTGTAAGAGCTCCACTACATGAAAATCCAGCTAGTGCCTTCTTG 2348
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2100 GTTAGGAGATCTACCCGTGTAAGAGCTCCACTTCATGAAAATCCAGCTAGTGCCTTCTTG 2159
Query 2349 AGATATGTTAACAAGTGGAAAGAGGACTAAACGTAGCAGAATTCAATTCT 2398
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AGATATGTTAACAAGTGGAAAGAGGACTAAACGTAGCAGAATTCAATTCT 2209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100786788270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5