BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08670.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487708 jgi|Araly1|487708|fgenesh2_kg.6__842__AT5G08670.1 3179 0.0
Ahg487711 jgi|Araly1|487711|fgenesh2_kg.6__845__AT5G08670.1 2687 0.0
Ahg487710 jgi|Araly1|487710|fgenesh2_kg.6__844__AT5G08680.1 2431 0.0
Ahg933138 jgi|Araly1|933138|scaffold_401126.1 189 7e-47
Ahg922659 jgi|Araly1|922659|scaffold_103940.1 158 2e-37
Ahg896516 jgi|Araly1|896516|Al_scaffold_0005_482 158 2e-37
Ahg935899 jgi|Araly1|935899|scaffold_500090.1 152 9e-36
> Ahg487708 jgi|Araly1|487708|fgenesh2_kg.6__842__AT5G08670.1
Length=1901
Score = 3179 bits (1721), Expect = 0.0
Identities = 1842/1902 (97%), Gaps = 1/1902 (0%)
Strand=Plus/Plus
Query 4 TCTCTCTCAAACACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCTCTTCTCCGT 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TCTCTCTCAAACACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCGCTTCTCCGT 60
Query 64 TCATCTTCCGGTAGATCTGCCGCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCT 123
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTTCCGGCAGATCTGCTTCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCT 120
Query 124 TCACCCGCGCGTCCCGCCGCTCCATGTAGCTACCTCCTCGGCCGCGTCGCCGAGTACGCG 183
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCACCCGCGCGTCACGCCGCTCCATGTAGCTACCTCCTCGGCCGTGTCGCCGAGTACGCG 180
Query 184 ACCTCTTCACCTGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGGAAG 243
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ACCTCTTCACCGGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGAAAG 240
Query 244 AAGACCTATGATTACGGTGGCAAAGGTGCGATCGGGCGTGTTTGCCAGGTCATTGGTGCC 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 AAGACCTATGATTACGGTGGCAAAGGCGCGATCGGGCGTGTTTGCCAGGTCATCGGTGCC 300
Query 304 ATTGTCGATGTGAGATTTGAGGATCAGGAAGGATTGCCACCAATCATGACATCTCTCGAG 363
||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 301 ATTGTCGATGTGAGATTCGAGGATCAGGAAGGATTGCCTCCGATCATGACATCCCTCGAG 360
Query 364 GTGCAGGATCACCCCACAAGGCTAGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTC 423
||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 361 GTGCAGGATCACCCCACAAGGCTGGTGCTTGAGGTGTCTCACCATTTGGGTCAAAATGTC 420
Query 424 GTCAGGACCATTGCTATGGATGGTACTGAGGGTCTCGTTCGTGGAAGGAAAGTCCTCAAC 483
||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 421 GTCAGGACCATTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAGGTTCTCAAC 480
Query 484 ACTGGCGCTCCAATCACTGTACCTGTCGGAAGGGCTACTCTTGGACGTATCATGAATGTT 543
||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 481 ACTGGTGCTCCGATTACTGTACCTGTTGGAAGAGCTACTCTTGGACGTATCATGAATGTT 540
Query 544 CTTGGAGAACCTATTGACGAAAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCAC 603
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTGGAGAACCCATCGACGAGAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCAC 600
Query 604 AGAGATGCACCGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATT 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGATGCTCCGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATT 660
Query 664 AAGGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGT 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AAGGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGGT 720
Query 724 GCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCCAAAGCTCAT 783
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GCTGGTGTTGGGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCAAAAGCTCAT 780
Query 784 GGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTAC 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTAC 840
Query 844 AGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAAAAGCAGTCTGAGAGCAAGTGT 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 AGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAGTGT 900
Query 904 GCTCTAGTGTACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTCTAGTGTACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACT 960
Query 964 GGTTTGACTGTTGCCGAGTATTTCCGTGATGCTGAAGGCCAAGACGTTTTGCTTTTCATT 1023
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 961 GGTTTGACTGTTGCCGAGTATTTCCGTGATGCCGAAGGCCAAGACGTCTTGCTTTTCATT 1020
Query 1024 GACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTACTCGGTCGTATC 1083
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1021 GACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCTTGGTCGTATC 1080
Query 1084 CCGTCTGCTGTGGGATACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGA 1143
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1081 CCGTCTGCTGTGGGCTACCAGCCAACTCTGGCTTCCGATCTTGGTGCTCTTCAAGAGAGA 1140
Query 1144 ATTACTACCACCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGAT 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATTACTACCACCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGAT 1200
Query 1204 GATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTC 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATTTGACTGATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTT 1260
Query 1264 TCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCAAGACAGATTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCC 1320
Query 1324 CGTATGCTGTCACCTCACATTCTGGGAGAGGAGCATTACAACACGGCTCGTGGCGTGCAG 1383
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1321 CGTATGCTGTCACCTCACATTCTGGGAGAGGAGCACTACAACACGGCTCGTGGCGTGCAG 1380
Query 1384 AAAGTTCTACAGAACTACAAGAACTTGCAAGATATTATTGCAATTTTGGGTATGGATGAG 1443
||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1381 AAAGTGCTACAGAACTACAAGAACTTGCAAGATATTATAGCCATTTTGGGAATGGATGAG 1440
Query 1444 CTAAGTGAAGATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGT 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CTAAGTGAAGATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGT 1500
Query 1504 CAGCCGTTCCACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAA 1563
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CAGCCATTCCACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAA 1560
Query 1564 GAAAATATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAA 1623
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1561 GAAAACATCAACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCTGAACAA 1620
Query 1624 TCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAA 1680
Query 1684 GAGTCAGCAGCTTAAGAGATTGATTCAGATCTTTCATGCTTAATACTTCTCttttttttC 1743
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1681 GAGTCAGCAGCTTAAGGGATTGATTCAGCTCTTTCATGCTTAATACTTCTCTTATTTTTC 1740
Query 1744 CTGACAATAACGaaaaaaaaaaaCCAATGCGTGCGACTCTCCGACCAAACGGAATCTGAG 1803
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1741 -TGACAATAACGAAAAAAAAAAAACAATGCCTGCGACTCCCCGACCAAACGGAATCTGAG 1799
Query 1804 TTCCGTAATTATAGTTTCTTTTGGTTCAAATTCCATGAGAGCTGGCAAGATGATACTGAA 1863
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTCCGTAATTATAGCTTCTTTTGGTTCAAATTCCATGAGAGCTGGCAAGATGATACTGAA 1859
Query 1864 CAGATCCATTCACTGTTAATCAAATTTTTGGTTGTTTTGCTT 1905
|||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1860 CAGATCCATTTACTGTTACTCAAATTTTTGGTTGTTTTGCTT 1901
> Ahg487711 jgi|Araly1|487711|fgenesh2_kg.6__845__AT5G08670.1
Length=1737
Score = 2687 bits (1455), Expect = 0.0
Identities = 1653/1749 (95%), Gaps = 12/1749 (1%)
Strand=Plus/Plus
Query 14 ACACACACCCACTCATGGCGTCTCGGAGAGTCTTATCATCTCTTCTCCGTTCATCTTCCG 73
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ACACACACCCACTCATGGCGTCTCGGAGAGTTTTATCATCTCTTCTCCGTTCATCTTCCG 60
Query 74 GTAGATCTGCCGCCAAATTAGGCAACCGTAACCCCAGGCTTCCTTCTCCTTCACCCGCGC 133
| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GCAGATCTGCTGCCAAACTAGGCAACCGTAACCCCAGGCTTCCTTCTCCTTCACCTGCGC 120
Query 134 GTCCCGCCGCTCCATGTAGCTACCTCCTCGGCCGCGTCGCCGAGTACGCGACCTCTTCAC 193
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTCACGCCGCTCCATGTAGCTACCTCCTCGGCCGCGTCGCCGAGTACGCCACCTCTTCAC 180
Query 194 CTGCAAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGGAAGAAGACCTATG 253
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCAAGCTCAGCTGCGCCATCCTCTGCTCCTGCTAAGGATGAGGGGAAGAAGACCTATG 240
Query 254 ATTACGGTGGCAAAGGTGCGATCGGGCGTGTTTGCCAGGTCATTGGTGCCATTGTCGATG 313
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 ATTACGGAGGCAAAGGTGCGATCGGGCGTGTTTGCCAAGTCATTGGTGCCATTGTTGATG 300
Query 314 TGAGATTTGAGGATCAGGAAGGATTGCCACCAATCATGACATCTCTCGAGGTGCAGGATC 373
||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 TGAGATTCGAAGATCAGGAAGGATTGCCTCCGATCATGACATCTCTCGAGGTGCAGGATC 360
Query 374 ACCCCACAAGGCTAGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTCGTCAGGACCA 433
||||||||||||| || ||||||||||| || || |||||||| ||||||||||||||||
Sbjct 361 ACCCCACAAGGCTGGTACTTGAGGTGTCCCACCATTTGGGTCAAAATGTCGTCAGGACCA 420
Query 434 TTGCTATGGATGGTACTGAGGGTCTCGTTCGTGGAAGGAAAGTCCTCAACACTGGCGCTC 493
||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||
Sbjct 421 TTGCTATGGATGGTACTGAGGGTCTTGTCCGTGGAAGGAAAGTTCTCAACACTGGTGCTC 480
Query 494 CAATCACTGTACCTGTCGGAAGGGCTACTCTTGGACGTATCATGAATGTTCTTGGAGAAC 553
|||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 481 CAATCACTGTGCCTGTTGGAAGAGCTACCCTTGGACGTATCATGAATGTTCTTGGAGAAC 540
Query 554 CTATTGACGAAAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCACAGAGATGCAC 613
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTATTGACGAGAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCACAGAGATGCAC 600
Query 614 CGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATTAAGGTTGTTG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATTAAGGTTGTTG 660
Query 674 ATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGTGCTGGTGTTG 733
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 ATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGAGCTGGTGTTG 720
Query 734 GGAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCCAAAGCTCATGGTGGTTTCT 793
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 721 GGAAAACTGTGCTTATTATGGAACTGATCAACAATGTTGCAAAAGCTCATGGTGGTTTCT 780
Query 794 CTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTACAGAGAAATGA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTACAGAGAAATGA 840
Query 854 TTGAGAGTGGTGTCATCAAGCTAGGCGAAAAGCAGTCTGAGAGCAAGTGTGCTCTAGTGT 913
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 841 TTGAGAGTGGTGTCATCAAGCTAGGCGAGAAGCAGTCTGAGAGCAAATGTGCTCTAGTGT 900
Query 914 ACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACTGGTTTGACTG 973
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 ATGGACAAATGAATGAGCCCCCGGGTGCCCGTGCTCGTGTTGGACTGACTGGTTTGACTG 960
Query 974 TTGCCGAGTATTTCCGTGATGCTGAAGGCCAAGACGTTTTGCTTTTCATTGACAACATTT 1033
||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 961 TTGCCGAGTATTTCCGTGATGCTGAAGGCCAGGATGTCTTGCTTTTCATTGACAACATCT 1020
Query 1034 TCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTACTCGGTCGTATCCCGTCTGCTG 1093
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 TCCGTTTCACCCAGGCCAACTCTGAAGTGTCTGCTTTGCTCGGTCGTATCCCGTCTGCTG 1080
Query 1094 TGGGATACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGAATTACTACCA 1153
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1081 TGGGTTACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGAATCACAACCA 1140
Query 1154 CCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGATGATTTGACTG 1213
|||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1141 CCAAGAAAGGTTCAATTACCTCAGTCCAAGCCATCTATGTCCCTGCTGATGATTTGACAG 1200
Query 1214 ATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTCTCAAGACAGA 1273
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1201 ATCCTGCTCCTGCCACAACATTTGCTCACTTGGACGCCACAACTGTGCTTTCAAGACAGA 1260
Query 1274 TTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCCCGTATGCTGT 1333
||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
Sbjct 1261 TTTCTGAGCTTGGTATCTATCCTGCTGTGGATCCTTTGGATTCGACGTCCCGTATGCTCT 1320
Query 1334 CACCTCACATTCTGGGAGAGGAGCATTACAACACGGCTCGTGGCGTGCAGAAAGTTCTAC 1393
| || |||||||| || |||||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 1321 CGCCCCACATTCTTGGTGAGGAGCACTACAACACTGCTCGTGGTGTGCAAAAAGTGCTAC 1380
Query 1394 AGAACTACAAGAACTTGCAAGATATTATTGCAATTTTGGGTATGGATGAGCTAAGTGAAG 1453
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1381 AGAACTACAAGAACTTGCAAGATATTATCGCCATTTTGGGTATGGATGAGCTAAGTGAAG 1440
Query 1454 ATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCGTTCC 1513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1441 ATGACAAGCTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCATTCC 1500
Query 1514 ACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAAGAAAATATCA 1573
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1501 ATGTTGCTGAAATCTTTACTGGTGCCCCTGGAAAATATGTCGACCTTAAAGAAAACATTA 1560
Query 1574 ACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACA 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACA 1620
Query 1634 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCAGCAG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1621 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCGGCAG 1680
Query 1694 CTTAAGAGATTGATTCAGATCTTTCATGCTTAATACTTCTCttttttttCCTGACAATAA 1753
|||||| |||| || | ||| || ||| | ||||| | |||| | |||||||||
Sbjct 1681 CTTAAGGGATT-AT---G--CTTA-ATACTTC-T-CTTCT-TCTTTTGT--TGACAATAA 1728
Query 1754 CGaaaaaaa 1762
|||||||||
Sbjct 1729 CGAAAAAAA 1737
> Ahg487710 jgi|Araly1|487710|fgenesh2_kg.6__844__AT5G08680.1
Length=2015
Score = 2431 bits (1316), Expect = 0.0
Identities = 1746/1950 (90%), Gaps = 43/1950 (2%)
Strand=Plus/Plus
Query 26 TCATGGCGTCTCGGAGAGTCTTATCATCTCTTCTCCGTTCATCTTCCGGTAGATCTGCCG 85
|||||||| |||| || |||||||||| ||||||||||| |||||||| |||||| |
Sbjct 45 TCATGGCGAGTCGGCGAATCTTATCATCGCTTCTCCGTTCTTCTTCCGGCAGATCTACTT 104
Query 86 CCAAA------TT-A--GGCAACCGTAACCCCAGGCTTCCTTCTCCTTCACCCGCGCGTC 136
| ||| || | || | ||| ||||| |||||| | || || ||||| | ||
Sbjct 105 CTAAATCCTCCTTGATCGGTAGCCGAAACCCGAGGCTTTCATCACCAGGTCCCGCTCATC 164
Query 137 CCGCCGCTCCATGTAGCTAC-CTCCTCGGCCGCGTCGCCGAGTACGCGACCTCTTCACCT 195
|| || || ||| | || ||||| ||||| ||||| ||||| |||| ||||| ||
Sbjct 165 GAGCTGCGCCTTGT-GGGACTCTCCTTGGCCGAGTCGCTGAGTATTCGACATCTTCTCCG 223
Query 196 GC-AAGCTCAGCTGCGCCATCTTCTGCTCCTGCTAAGGATGAGGGGAAGAAGACCTATGA 254
|| || || ||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 224 GCTAA-TTCGGCTGCGCCATCGTCTGCTCCTGCTAAGGATGAGGGGAAGAAGATCTATGA 282
Query 255 TTACGGTGGCAAAGGTGCGATCGGGCGTGTTTGCCAGGTCATTGGTGCCATTGTCGATGT 314
||||||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 283 TTACGGTGGCAAAGGCGCGATCGGGCGTGTGTGTCAGGTTATTGGTGCCATTGTTGATGT 342
Query 315 GAGATTTGAGGATCAGGAAGGATTGCCACCAATCATGACATCTCTCGAGGTGCAGGATCA 374
|||||| || |||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 343 GAGATTCGAAGATCAGGAGGGATTGCCTCCGATCATGACATCTCTCGAGGTCCAGGATCA 402
Query 375 CCCCACAAGGCTAGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTCGTCAGGACCAT 434
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 403 TCCCACAAGGCTGGTACTTGAGGTGTCTCATCACTTGGGTCAAAATGTCGTCAGGACCAT 462
Query 435 TGCTATGGATGGTACTGAGGGTCTCGTTCGTGGAAGGAAAGTCCTCAACACTGGCGCTCC 494
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 463 TGCTATGGATGGTACTGAGGGTCTCGTCCGTGGAAGGAAAGTTCTCAATACTGGCGCTCC 522
Query 495 AATCACTGTACCTGTCGGAAGGGCTACTCTTGGACGTATCATGAATGTTCTTGGAGAACC 554
||||||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct 523 AATCACTGTTCCTGTTGGAAGGGCCACCCTTGGACGTATCATGAATGTTCTTGGCGAACC 582
Query 555 TATTGACGAAAGAGGCGAAATTAAGACCGAACATTACTTACCTATTCACAGAGATGCACC 614
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 583 CATTGACGAGAGAGGCGAAATTAAGACCGAGCATTACTTACCCATTCACAGAGACGCTCC 642
Query 615 GGCTTTGGTTGATCTAGCTACTGGGCAAGAGATCCTGGCCACTGGTATTAAGGTTGTTGA 674
|||||||||||| | || || || |||||||| ||||| ||||||||||||||||||||
Sbjct 643 AGCTTTGGTTGATTTGGCCACCGGTCAAGAGATTCTGGCTACTGGTATTAAGGTTGTTGA 702
Query 675 TCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGCGGTGCTGGTGTTGG 734
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 703 TCTCCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGGCTTTTTGGCGGTGCTGGCGTTGG 762
Query 735 GAAAACTGTGCTTATTATGGAGCTGATCAACAATGTTGCCAAAGCTCATGGTGGTTTCTC 794
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAAAACAGTGCTCATTATGGAACTGATCAACAATGTTGCCAAAGCTCATGGTGGTTTCTC 822
Query 795 TGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTACAGAGAAATGAT 854
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 823 CGTGTTTGCTGGTGTGGGAGAACGGACCCGTGAAGGCAATGACTTGTACAGAGAAATGAT 882
Query 855 TGAGAGTGGTGTCATCAAGCTAGGCGA-AAAGCAGTCTGAGAGCAAGTGTGCTCTAGTGT 913
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 883 TGAGAGTGGTGTCATCAAGCTAGGCGAGAAA-CAGTCTGAGAGCAAATGTGCTCTAGTGT 941
Query 914 ACGGACAAATGAATGAGCCCCCGGGTGCCCGTGCCCGTGTTGGACTGACTGGTTTGACTG 973
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 942 ATGGACAAATGAATGAGCCCCCGGGTGCCCGTGCTCGTGTTGGACTGACTGGTTTGACTG 1001
Query 974 TTGCCGAGTATTTCCGTGATGCTGAAGGCCAAGACGTTTTGCTTTTCATTGACAACATTT 1033
|||||||||||||||||||||| |||||||| || || |||||||||||||||||||| |
Sbjct 1002 TTGCCGAGTATTTCCGTGATGCCGAAGGCCAGGATGTCTTGCTTTTCATTGACAACATCT 1061
Query 1034 TCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTACTCGGTCGTATCCCGTCTGCTG 1093
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1062 TCCGTTTCACCCAGGCCAACTCTGAAGTGTCTGCTTTGCTCGGTCGTATCCCGTCTGCTG 1121
Query 1094 TGGGATACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGAATTACTACCA 1153
|||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1122 TGGGTTACCAGCCAACCCTGGCTTCCGATCTTGGTGCTCTTCAAGAGCGAATCACTACCA 1181
Query 1154 CCAAGAAAGGGTCTATCACCTCAGTCCAAGCCATCTATGTACCTGCTGATGATTTGACTG 1213
|||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1182 CCAAGAAAGGTTCAATTACCTCAGTCCAAGCCATCTATGTCCCTGCTGATGATTTGACAG 1241
Query 1214 ATCCTGCTCCTGCTACAACTTTTGCTCACTTGGACGCCACAACTGTGCTCTCAAGACAGA 1273
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1242 ATCCTGCTCCTGCCACAACTTTTGCTCACTTGGACGCCACAACTGTGCTGTCAAGACAGA 1301
Query 1274 TTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCAACATCCCGTATGCTGT 1333
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1302 TTTCTGAGCTTGGTATCTACCCTGCTGTGGATCCTTTGGATTCGACGTCCCGTATGCTCT 1361
Query 1334 CACCTCACATTCTGGGAGAGGAGCATTACAACACGGCTCGTGGCGTGCAGAAAGTTCTAC 1393
| ||||||||| |||| |||||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 1362 CGCCTCACATTTTGGGTGAGGAGCACTACAACACAGCTCGTGGTGTGCAAAAAGTGCTAC 1421
Query 1394 AGAACTACAAGAACTTGCAAGATATTATTGCAATTTTGGGTATGGATGAGCTAAGTGAAG 1453
||||||||||||| |||||||||||||| || |||||||| ||||||||| |||||||||
Sbjct 1422 AGAACTACAAGAATTTGCAAGATATTATCGCCATTTTGGGAATGGATGAGTTAAGTGAAG 1481
Query 1454 ATGACAAGTTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCGTTCC 1513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1482 ATGACAAGCTGACTGTTGCCCGTGCCCGTAAGATCCAGAGATTCTTGAGTCAGCCATTCC 1541
Query 1514 ACGTTGCTGAGATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAAGAAAATATCA 1573
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1542 ATGTTGCTGAAATCTTCACTGGTGCCCCTGGAAAATATGTCGACCTTAAAGAAAACATCA 1601
Query 1574 ACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACA 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 ACAGTTTCCAGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACA 1661
Query 1634 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCAGCAG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TGGTTGGAGGTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAGAGTCAGCAG 1721
Query 1694 CTTAAGA-GATTGATTCAGATCTTTCAT--GCTTAATACTTCTCttttttttCCTGACAA 1750
|||| || | | |||||| |||||||| ||||||||||| ||| ||| || ||||||
Sbjct 1722 CTTA-GAAGCTGGATTCATCTCTTTCATATGCTTAATACTTGTCTGTTTCTTG-TGACAA 1779
Query 1751 TAACGaaaaaaaaaaaCCAATGC--GTGCG--AC-T-CTCCGACCAAACGGAATCTGAGT 1804
||||||||||||||| ||| ||| ||| | || | | || ||||| |||||| |||||
Sbjct 1780 TAACGAAAAAAAAAA-CCACTGCCTGTGAGTTACCTACCCCCACCAAGCGGAATTTGAGT 1838
Query 1805 TCCGTAATTATAGTTTCTTTTGGTTCAAATTCCA-T-GAGAGCTG-GCAAGATGATACTG 1861
|||||| ||||||||||||| ||||| |||||| | ||||||| | || ||||| |||
Sbjct 1839 TCCGTATTTATAGTTTCTTTGGGTTCGGATTCCAATTGAGAGCTACG-AA-ATGATGCTG 1896
Query 1862 AACAGATCC---ATTCACT-GTTAATCAAATTTTTGGTTGTTTTGCTTCCTT---T-GTT 1913
|||| |||| |||| || || | ||| |||||||||| ||| ||||||| | |||
Sbjct 1897 AACATATCCTTCATTCCCTTGT-ACTCAGATTTTTGGTTCATTTACTTCCTTGACTTGTT 1955
Query 1914 GAAATAAAGATGAAA-AA-TCTTGCAGATT 1941
||||||||| | || || |||||||||||
Sbjct 1956 GAAATAAAGGTTAAGCAAGTCTTGCAGATT 1985
> Ahg933138 jgi|Araly1|933138|scaffold_401126.1
Length=326
Score = 189 bits (102), Expect = 7e-47
Identities = 102/102 (100%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1583 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 284
Query 1643 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 1684
||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 326
> Ahg922659 jgi|Araly1|922659|scaffold_103940.1
Length=249
Score = 158 bits (85), Expect = 2e-37
Identities = 102/110 (93%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 780 TCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTT 839
||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 77 TCACGGTGGTTTCTCTGTGTTTGCTGGCGTGGCAGAACGGACCCGTGAAGGCAATGACTT 136
Query 840 GTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGA-AAAGCAG 888
||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 137 GTACAGAGAAATGATTGAGAGCAGTGTCATCAAGCTAGGCGAGAAA-CAG 185
> Ahg896516 jgi|Araly1|896516|Al_scaffold_0005_482
Length=207
Score = 158 bits (85), Expect = 2e-37
Identities = 102/110 (93%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 780 TCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTT 839
||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 57 TCACGGTGGTTTCTCTGTGTTTGCTGGCGTGGCAGAACGGACCCGTGAAGGCAATGACTT 116
Query 840 GTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGA-AAAGCAG 888
||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 117 GTACAGAGAAATGATTGAGAGCAGTGTCATCAAGCTAGGCGAGAAA-CAG 165
> Ahg935899 jgi|Araly1|935899|scaffold_500090.1
Length=249
Score = 152 bits (82), Expect = 9e-36
Identities = 101/110 (92%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 780 TCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTT 839
||| |||||||||||||||||| |||| |||| |||||| ||||||||||||||||||||
Sbjct 77 TCACGGTGGTTTCTCTGTGTTTTCTGGCGTGGCAGAACGGACCCGTGAAGGCAATGACTT 136
Query 840 GTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGA-AAAGCAG 888
||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 137 GTACAGAGAAATGATTGAGAGCAGTGTCATCAAGCTAGGCGAGAAA-CAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5