BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08710.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487713 jgi|Araly1|487713|fgenesh2_kg.6__847__AT5G08710.1 2375 0.0
> Ahg487713 jgi|Araly1|487713|fgenesh2_kg.6__847__AT5G08710.1
Length=1533
Score = 2375 bits (1286), Expect = 0.0
Identities = 1358/1394 (97%), Gaps = 0/1394 (0%)
Strand=Plus/Plus
Query 192 AATCACATTTTCTTTTGATTTCTACAAGTGAAAATGTTGACTAGAGCCATCGGACGAGTT 251
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AATCACATTTCCTTTTGATTTCTACAAGTGAAAATGTTGACTAGAGCCATCGGACGAGTT 199
Query 252 CGAATTCCTGTGTCGAGGATTCAGGGATCGAATTGTACGAGTGGGCTTTTAAAAGATTCG 311
||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||
Sbjct 200 CGAATTCCTGTGTCGAGGATTCAGGGATCGAATAATTCGAGTGGGTTTTTGAAAGATTCG 259
Query 312 AAATTGGGTCCGATTGGTGTTTGCTGTAGCAGATGGGTATCGAGCGAGAGCGGGAAACGA 371
|||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||
Sbjct 260 AAATTGGGTCCGATTGGTGTTTTCTGTAGAAGATGGTTATCGAACGAGAGCGGGAAACGA 319
Query 372 TTTGCGGCGATGTGGGGAAGTGGAGATTACGGCAGATTAGGGCTCGGAAACTTGGATTCT 431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTGCGGCAATGTGGGGAAGTGGAGATTACGGCAGATTAGGGCTCGGAAACTTGGATTCT 379
Query 432 CAGTGGACACCTGCCGTTTGCTCTGCCTTGAGTGATCACAGTATCACAGCTGTCGCTTGC 491
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 380 CAGTGGACACCTGCCGTTTGCTCTGCCTTGAGTGATCACAGTATCAGAGCTGTCGCTTGC 439
Query 492 GGCGGAGCTCACACTCTGTTTCTCACCGAAACGAGGAGAGTCTTTGCAACGGGTCTTAAT 551
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGTGGAGCTCACACTCTGTTTCTCACCGAAACGAGGAGAGTCTTTGCAACGGGTCTTAAT 499
Query 552 GATTGTGGTCAACTTGGCGTATCAGATGTTAAAAGTCATGCTATGGATCCGCTTGAAGTT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GATTGTGGTCAACTTGGCGTATCAGATGTTAAAAGTCATGCTATGGATCCGCTTGAAGTT 559
Query 612 TCTGGACTAGATAAGGATATTCTGCACATTTCAGCTGGTTATTATCACTCCGCTGCTATT 671
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 560 TCTGGACTAGAAAAGGATATTCTGCACATCTCAGCTGGTTATTATCACTCCGCTGCTATT 619
Query 672 ACAGTTGATGGAGAACTCTACATGTGGGGAAAGAACTCAAGTGGACAGCTTGGACTGGGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ACAGTTGATGGAGAACTCTACATGTGGGGAAAGAACTCAAGTGGACAGCTTGGACTGGGA 679
Query 732 AAAAAGGCTGCAAGAGTGGTACGTGTACCAACTAAAGTGGAAGCTCTGCATGGCATCACC 791
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 680 AAAAAGGCTGCAAGAGTGGTACGTGTACCAACTAAAGTGCAAGCTCTGCATGGAATCACC 739
Query 792 ATACAATCCGTGGCTTTGGGTTCAGAGCATTCAGTTGCTGTTACTGATGGAGGTGAAGTC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ATACAATCCGTGGCTTTGGGTTCAGAGCATTCAGTTGCTGTTACTGATGGAGGTGAAGTC 799
Query 852 CTGAGTTGGGGAGGAGGGGGCTCTGGAAGACTTGGCCACGGTCACCAGTCCAGTCTTTTT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CTGAGTTGGGGAGGAGGGGGCTCTGGAAGACTTGGCCACGGTCACCAGTCCAGTCTTTTT 859
Query 912 GGCATCTTAAGAAGTAACAGTGAGTTTACTCCAAGGCTTATCAAGGAACTTGAGGGGATC 971
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 860 GGCATCTTAAGAAGTAACAGTGAGTTTACTCCAAGGCTTATTAAGGAACTTGAGGGGATC 919
Query 972 AAGGTCACAAATGTTGCTGCTGGTCTGCTGCATTCAGCATGCACTGATGAGAATGGCTCT 1031
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AAGGTTAAAAATGTTGCTGCTGGTCTGCTGCATTCAGCATGCACTGATGAGAATGGCTCT 979
Query 1032 GCTTTCATGTTCGGAGAGAAATCTATAAACAAGATGGGCTTTGGAGGAGTAAGAAATGCC 1091
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 980 GCTTTCATGTTCGGAGAGAGATCTATAAACAAGATGGGCTTCGGAGGAGTAAGAAATGCC 1039
Query 1092 ACAACACCATCGATTATCAGTGAAGTACCATATGCAGAAGAAGTTGCATGTGGTGGCTAC 1151
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1040 ACAACACCATCGATTATCAGTGAAGTACCCTATGCAGAAGGAGTTGCATGTGGTGGCTAC 1099
Query 1152 CACACATGTGTAGTTACAAGAGGTGGGGAGCTTTACACCTGGGGCTCAAACGAAAATGGG 1211
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1100 CATACATGTGTTGTTACAAGAGGTGGGGAGCTTTACACCTGGGGATCAAACGAAAATGGG 1159
Query 1212 TGCCTTGGAACAGATTCAACGTATGTCTCACACTCCCCTGTGAGAGTTGAAGGTCCTTTC 1271
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1160 TGCCTTGGAACAAATTCAACATATGTCTCACACTCACCTGTGAGAGTTGAAGGTCCTTTC 1219
Query 1272 TTGGAGTCTACTGTATCTCAGGTATCTTGTGGGTGGAAGCACACTGCAGCTATTTCAGAT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TTGGAGTCTACTGTATCTCAGGTATCTTGTGGGTGGAAGCACACTGCAGCTATTTCAGAT 1279
Query 1332 AACAATGTCTTCACCTGGGGCTGGGGAGGATCTCACGGCACATTCTCTGTTGATGGACAT 1391
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1280 AACAAGGTCTTCACCTGGGGCTGGGGAGGCTCTCACGGCACATTCTCTGTTGATGGACAT 1339
Query 1392 TCCTCTGGTGGACAATTGGGCCATGGTAGTGATGTAGACTATGCAAGACCAGCAATGGTG 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TCCTCTGGTGGACAATTGGGCCATGGTAGTGATGTAGACTATGCAAGACCAGCAATGGTG 1399
Query 1452 GACTTGGGAAAGAATGTAAGAGCAGTGCATATATCTTGTGGCTTCAATCATACAGCAGCA 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 GACTTGGGAAAGAATGTAAGAGCAGTGCATATATCTTGTGGCTTCAATCATACAGCAGCA 1459
Query 1512 GTTCTTGAACATTTTTGAAGACTCGGTCTCAAGTTAATATCATATACAGATGTTTAGTTT 1571
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||
Sbjct 1460 GTTCTTGAACATTTTTGAAGACTCAGTCTCAATTTCATATCATATACAGATGTTTGGTTT 1519
Query 1572 ATTCTTGCTTAAAC 1585
||||||||||||||
Sbjct 1520 ATTCTTGCTTAAAC 1533
Score = 202 bits (109), Expect = 7e-51
Identities = 130/140 (93%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 1 ATTCTAGAGACTTTCAATAACGGGAAGACGTAGCATTCTTGCTATCCATCAGTTTCTTCT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATTCTAGAGACTTTCAATAACGGGAAGACGTAGCATTCTCGCTGTCCATCAGTTTCTTCT 60
Query 61 TCCTTGTTGTTGATCATCAT--GTGATTCCATTTACGAGTTCAATCTCTCCATGAAAAAT 118
||| | || ||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 61 TCCATCTTCTTGATCATCATATGTGATTCCATTTACAAGTTCAATCTCTTCATGAAAAAT 120
Query 119 CTAGTCTCTTTTCAAACGGa 138
| ||||||||||||||||||
Sbjct 121 CCAGTCTCTTTTCAAACGGA 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5