BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08720.1
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487714 jgi|Araly1|487714|fgenesh2_kg.6__848__AT5G08720.1 3757 0.0
> Ahg487714 jgi|Araly1|487714|fgenesh2_kg.6__848__AT5G08720.1
Length=2312
Score = 3757 bits (2034), Expect = 0.0
Identities = 2225/2316 (96%), Gaps = 17/2316 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTTCCTCTACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCTTCCTCCACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60
Query 61 GTTTCCACATCTCTCTCATGGCGTTCACACTATCAATTTCCTCAA--T-------GAACC 111
|||| |||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct 61 ACTTCCTCATCTCTCCCATGGCGTTCACACTATCAACTTCCTCAATTTCACCAACGAACC 120
Query 112 AGTGTTTTTAAGTGTGTTGCTCCCATCTCCCTCTCGGATTCGAGTATTCTCGTCCATTTC 171
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 121 AGTGTTTTTAAGTGTATTGCTCCCATGTCCCTCTCGGATTCGAGTATTCTCGACCATTTC 180
Query 172 CACCTCCGGGATCGGC-G-GC-GGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 228
|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACCACCGGGATCGGCGGCGCTGGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 240
Query 229 CGGTGGTAGAGGTGATAACGGGTTGAGGAGAGATAGTGGATTAGGTTTCGACgagagagg 288
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 C---GGTAGAGGTGATAACGGGTTGAGGAGCGATAGTGGATTAGGTTTCGACGAGAGAGG 297
Query 289 agagagaAAAGTGCGTTGTGAGGTTGATGTGATCTCGTGGAGAGAACGGAGGATAAGAGG 348
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GGAGAAAAAAGTGCGTTGTGAGGTTGATGTGATCTCTTGGAGAGAACGGAGGATAAGAGG 357
Query 349 CGAAATCTGGGTCGATTCTGATTCTCAATCTGTTTGGAATGTTCTTACTGATTATGAACG 408
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 CGAAATCTGGGTCGATTCCGATTCTCAATCTGTTTGGAATGTTCTCACTGATTATGAACG 417
Query 409 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 477
Query 469 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATTGAGGCTCG 528
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATCGAGGCTCG 537
Query 529 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGTCGTGAGCTTCACTTCTC 588
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGCCGTGAGCTTCACTTCTC 597
Query 589 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 657
Query 649 GTCCGTAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCAAGATTTAACTTCCCTGC 708
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 GTCCATAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCCAGATTTAACTTCCCTGC 717
Query 709 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 777
Query 769 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 837
Query 829 TATAATATCTTCACAGCCAGCCCCTTCTAATGGTATTGAGTTCGATAGTCTTGCTACGGA 888
|| ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||
Sbjct 838 TAGAATATCTTCACAGCCAGCCCCTTCTCATGGTGTTGAGTTCGAAAGTCTTGCTACTGA 897
Query 889 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 957
Query 949 GGGAGTGTATGGAAAAGCCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGGAGTGTATGGAAAAGTCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1017
Query 1009 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGATGCGCCGTTGCTAGTAT 1068
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGTTGCGCCGTTGCTAGTAT 1077
Query 1069 AACAGTTAAAGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACGTCTTATGAGAGTCTTCC 1128
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1078 AACAGTTAAGGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACTTCTTACGAGAGTCTTCC 1137
Query 1129 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAAGTCCG 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAGGTCCG 1197
Query 1189 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCAAGAGCTGTTCT 1248
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCGAGAGCTGTTCT 1257
Query 1249 CGATTTGCATGAGATTCGTGAGCAGGAAATCAGATTTGAACAGGTTGAAGGAGACTTTGA 1308
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 CGATTTGCATGAGATTCGCGAGCAGGAAATCAGATTTGAGCAGGTTGAAGGAGACTTTGA 1317
Query 1309 CTCGCTAGAGGGGAAATGGATTTTTGAACAACTAGGAAGTCACCACACACTTCTCAAGTA 1368
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1318 ATCGCTAGAGGGAAAATGGATTTTTGAACAATTAGGAAGTCACCACACACTTCTCAAGTA 1377
Query 1369 TACCGTGGAGTCCAAAATGAGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1428
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TACCGTGGAGTCCAAAATGCGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1437
Query 1429 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATCCGGGATTACATTGAGAAAAGAGG 1488
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1438 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATTCGGGATTACATTGAGAAAAGAGG 1497
Query 1489 AGAGAAATCTTCAGAGTCATGTAAACTGGAGACATGTCAAGTTTCAGAGGAAACATGTTC 1548
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1498 AGAGAAATCTTCAGAGTCATGTAAGCTGGAGACATGTGAAGTTTCAGAGGAAACATGTTC 1557
Query 1549 TTCATCTCGTGCCA-AATCAGTTGAGACAGTTTACAATAATGATGATGGTTCAGACCAAA 1607
|||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1558 TTCATCTCGTGCCACAA-CAGTTGAGACAGTTTACAATAGTGATGATGGTTTGGACCAAA 1616
Query 1608 CTAAGCAGAGACGGAGGATTCCTGGTCTACAAAGAGACATTGAAGTCTTGAAATCAGAAA 1667
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
Sbjct 1617 CTAAGCAGAGACGGAGGATTCCCGGTCTGCAAAGAGACATTGAAGTATTGAAATCAGAGA 1676
Query 1668 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1736
Query 1728 GGTTACATGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1787
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GGTTACACGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1796
Query 1788 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1856
Query 1848 ACAATCTCGAAAACTTGCAAGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1907
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 ACAATCTTGAAAACTTGCAGGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1916
Query 1908 CATCATTTATGCCGAGCAGAAAATCTTTCGAACGAGCAGGTCGTTATGACATTGCTCGGG 1967
||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||
Sbjct 1917 CATCATTTATGCCGAGCAGAAAAACGTTCGAACGCGCAGGTCGTTATGACATTGCGCGGG 1976
Query 1968 CGCTCGAGAAATGGGGAGGATTACACGAAGTATCTCGTCTTTTAGCATTGAACGTGAGAC 2027
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1977 CGCTGGAGAAATGGGGAGGATTACACGAAGTGTCTCGTCTTCTAGCATTGAACGTGAGAC 2036
Query 2028 ATCCAAACAGGCAGCTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2087
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ATCCGAACAGACAGGTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2096
Query 2088 CTACTGAGGCCGATTTAAATTCAACGGTTAATAAGAATAATAAACCTTACGTCTCTCAAG 2147
|||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 2097 CTACCGAGGCCGATTTAAATTCAGCGGTTAATAAGAAAAATAAACCTTACGTCTCTGAAG 2156
Query 2148 ATACCGAGAAATGGTTGTACAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTGAA 2207
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2157 ATACAGAGAAATGGTTGTATAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTAAA 2216
Query 2208 GCATTAATTATGTACATTTCACTATTTGTGTAGTCTTGTAACTCGCAAAGATAAACATGT 2267
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2217 GCATTAGTTATGTACATTTCAATATTTGTGTAGTCTTGTAATTCGCAAAGATAAACATGT 2276
Query 2268 ATTTATGTAAATTGTAACATTGGATTGAAATTATCT 2303
|||||||||||||| |||||| ||||||||| ||||
Sbjct 2277 ATTTATGTAAATTGCAACATTAGATTGAAATAATCT 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87531383010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5