BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08730.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487715 jgi|Araly1|487715|fgenesh2_kg.6__849__AT5G08730.1 1945 0.0
> Ahg487715 jgi|Araly1|487715|fgenesh2_kg.6__849__AT5G08730.1
Length=1493
Score = 1945 bits (1053), Expect = 0.0
Identities = 1362/1510 (90%), Gaps = 25/1510 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCCGATGGTCAGAAATACTCTGTGCTTGCGAAAACACAAGTCCGTGAGAAGATG 60
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1 ATGGAAGCCGATGGTCAGAAATACTCTGTTCTTGAGAAAACACAAGTTCGTGAGAAGATG 60
Query 61 ATGAAAGAAATTGAACAGATCTCGGAAGTCTTCTTGGTGTCAAAATCGGATGCAACCGTC 120
||||||||||| |||||||||||||||||||||| ||| |||||||| || ||||||||
Sbjct 61 ATGAAAGAAATCGAACAGATCTCGGAAGTCTTCTCGGTTTCAAAATCCGACGCAACCGTA 120
Query 121 ATCCTAATTC-GTCTCGGATGGAACTCGTTTAAGGCTTCAGATCTTCTTGGTGACAACAA 179
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCTAA-TCTGTCTCCGATGGAACTCGTTTAAGGCTTCAGATCTTCTTGGTGACAACAA 179
Query 180 GGAGAAGTTTCTGGCGAAGTTAGGGTTGGCTCGAGTTCTCAATTCCAACTCTTCTTCAGC 239
| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||
Sbjct 180 GAAGAAGTTTCTGGCGAAGTTAGGGCTGGTTCGAGTTTTCAATTCCAACTCTTCTTCTGC 239
Query 240 TGATCGTGAGACGGGTGATGGAGATTACTTAGTCTCCACGCCCTTTTGCTCACACAAGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGATCGTGAGACGGGTGATGGAGATTACTTAGTCTCCACGCCCTTTTGCTCACACAAGTT 299
Query 300 TTCAACAACTTGCTGGAGTGAATATCTCAGCGATGCTCTGAAGAAGAACAAGGAGCAGAG 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 300 TTCAACAACTTGCTGGAGTGAATATCTCAGCGATGCTCTGGAGAAGAACAAGGAGGAGAG 359
Query 360 AGGACTCATCTCTTGCCTTAGCCAAGACTGTGTCGCCTCTGTTGGACCCGATACGATCGA 419
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 360 AGGACTCATCTCTTGCCTTAACCAAGACTGTGTCGCTTCCGTTGGACCCGATACGATCGA 419
Query 420 GCAACTCACAGAGCCAGTGAAGGAGATGTACGAGAATTATATTCTCGAATCCTTCATGGA 479
||||||| |||| |||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 420 AAAACTCACTGAGCAAGTGAAGGTGATGTACGAGAATTATGCTCTCGAATCATTCATGGA 479
Query 480 GTGCCACAAGGCAACGATCAAATGGTGTCCTGCTTCGGGTTGTGAATACGCCGTCGAGCT 539
|||||| |||| ||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 480 GTGCCATAAGGGAACGATCAAATGGTGTCCTGCATCGGGGTGTGAATACGCTATCGAGCT 539
Query 540 TCAGGAGGATGGTAATGAAGATAATGTCATCAGTGTGGTCTGTTTGTGCGGCCATACCTT 599
||||||||||||||||||||||||||| | | |||||| |||||||||||||| |||||
Sbjct 540 TCAGGAGGATGGTAATGAAGATAATGTGA-C--TGTGGTTTGTTTGTGCGGCCACACCTT 596
Query 600 CTGTTGGACATGCGGGCTCGAGTCACACCGTCCGGTGTCTTGCAAAAAGGCATCAATTTG 659
||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 597 CTGCTGGACATGCCGGCTTGAGTCACACCGACCGGTGTCTTGCAAAAAAGCATCAATTTG 656
Query 660 GTGGACGTACCTGTTGGATCAGTCAAGAAGCATTTCTTGGATCCATACAAACACCAAAAG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 GTGGACGTACCTGTTGGATCAGTCAAGAAGCATTTCTTGGATCCATGCAAACACCAAACC 716
Query 720 TTGTCCCAAGTGCAAGATTCCTGTGCAGCAGAATGGTGATCCTAATTACAGACTCATTAA 779
||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 717 TTGTCCCAATTGCAAGAGTCCTGTGCAGCAGAATGGTGATCCTGATTACAGGCTCATCAC 776
Query 780 TTGTATCTGCAGTAATAACTTCTGTTGGATCTGCTTGCGCACGGAGGAACAGCATCAGGG 839
|||||| |||||| ||| ||||||||||||||||||||||||||||||| | ||| | ||
Sbjct 777 TTGTATATGCAGTCATAGCTTCTGTTGGATCTGCTTGCGCACGGAGGAAGACCATAATGG 836
Query 840 GAACTGGAATTGTTCTCCAGTCGCTGTTCCAGCTGCGGGTCCTTCTACCGTTGAATTCTC 899
||||||||| ||| |||||||| ||||||||||||||| |||| | |||| ||||||||
Sbjct 837 GAACTGGAACTGTGCTCCAGTCACTGTTCCAGCTGCGGATCCTACAACCGCCGAATTCTC 896
Query 900 ACAGATTCTCCACCTGAATCTGTGGGA-GGCAGGTCATGAAGCATTGAAGAAGGCTAAGT 958
|| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 897 TCACATTCTCCACCTGAATCTGTGGGAAGG-AGGTCATGAAGCATTGGAGAAGGCTAAGT 955
Query 959 CCAAGCTGAGAGCCTTAGAGGAAAAAATCATTCCGAAACT-GATCGAGAACTGCGGAGCG 1017
||||||||||||||||||||||||||| |||||||||||| | | ||||| || ||| |
Sbjct 956 CCAAGCTGAGAGCCTTAGAGGAAAAAACCATTCCGAAACTAGTT-GAGAATTGTGGATTG 1014
Query 1018 ACCGAGCTGGACATTAGGACAGTAAGAGAAGCAGGGATGCTTAGTGTTCAGTGCAGGCAG 1077
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 AGCGAGCTGGACATTAGGACAGTAAGAGAAGCAGGGATACTTAGTGTTCAGTGCAGGCAG 1074
Query 1078 GTACTGAAATGGAGTTGCGTATTTGATTACT-CTATAATCGAGTACGAAAGCACGAAGAA 1136
|||||||||||||| || || ||||| |||| | |||| |||||||||||||||||||||
Sbjct 1075 GTACTGAAATGGAGCTGTGTTTTTGACTACTTC-ATAACCGAGTACGAAAGCACGAAGAA 1133
Query 1137 GCAGTAC-CTGAAACACCTCCGAGCTCTGGCGAGCACAATGCTTTGTATGCACGAAGGGA 1195
||||||| | |||||||||| || || |||||| |||||||||||| |||||||||||
Sbjct 1134 GCAGTACAC-GAAACACCTCATAGGTCAAGCGAGCGCAATGCTTTGTACGCACGAAGGGA 1192
Query 1196 AGCTTGATGAGTTGATACATCTAGCCCTCTCACCTGAAGATTTCACTAACTATAAGCACA 1255
|||||||||||| ||| ||| |||||||||| || |||||||||| || ||||||||
Sbjct 1193 AGCTTGATGAGTCGATGTATCGAGCCCTCTCAGGTGGAGATTTCACTTTCTTTAAGCACA 1252
Query 1256 AGTTGGAAATCAGTACAACATGCACTGGTAACCACTTCGATGGATTCATCAAGGAACTGG 1315
|||||||| ||||||||||| |||||||||| ||||||||| |||||||||||| ||||
Sbjct 1253 TGTTGGAAACCAGTACAACATACACTGGTAACTACTTCGATGCATTCATCAAGGATCTGG 1312
Query 1316 AAGATGGTAAGCC---TGAAGTGAAGGCTGATGGTTACGAGAATGAACCAGGCAGTCGCT 1372
||||||||||||| ||||||||||||||||| || ||| ||| || | |||||| ||
Sbjct 1313 AAGATGGTAAGCCGCCTGAAGTGAAGGCTGATGCATATGAGGATGGACAAAGCAGTCACT 1372
Query 1373 GGTTCTGTGATAGGTGCACGTTTGAGAACAGCTGGGTTGATAAACAGTGCAAGATGTGCT 1432
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1373 GGTTCTGCGATAGGTGCACGTTTGAGAACAGCTGTGATGATAAACAGTGCAAGATGTGCT 1432
Query 1433 TTTTCCCCCTGGACTATCATCCTTCTCCTCAAGTGGCAGCAGCTCCTGAAGACCTTGGAA 1492
||| | | |||| || | |||| | | ||||||||||||||||||||||||||||
Sbjct 1433 TTTACTCTCTGGGCT--C-TCCT-CA--T---GTGGCAGCAGCTCCTGAAGACCTTGGAA 1483
Query 1493 AATCGGAGTG 1502
||| ||||||
Sbjct 1484 AATTGGAGTG 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5