BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08740.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940367 jgi|Araly1|940367|scaffold_600911.1 2566 0.0
Ahg948554 jgi|Araly1|948554|scaffold_800441.1 148 1e-34
> Ahg940367 jgi|Araly1|940367|scaffold_600911.1
Length=1605
Score = 2566 bits (1389), Expect = 0.0
Identities = 1535/1607 (96%), Gaps = 4/1607 (0%)
Strand=Plus/Plus
Query 82 TTCCGGCGATATAT-AAAGTCAGCAATGGCCGTTCTCTCCTCTGTATCTTCTCTCATACC 140
|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 1 TTCCGGCGATAT-TCAAAGTCAACAATGGCCGTTCTCTCCTCCGTATCTTCTCTCTTACC 59
Query 141 CTTCTCTTATGGGGCAACGAGACTGACTAGTAAAGCTTCATTAGCCTCAAGAACTTCCGG 200
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 60 CTTCTCTTATGGGGCAAAGAGACTGACTAGTAAAGCTTCTTTAGCTTCAAGAACTTCTGG 119
Query 201 ATTCAATCTCTCTTCTCGTTGGAACTCAACGAGAAACTCCCCTATGTTGTATCTTTCGAG 260
|||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||
Sbjct 120 ATTCAATCTCTCTTCTCGTTGGCACTCAACGAGAAGCGCCCCTAGGTTGTATCTTTCGAG 179
Query 261 AGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGATAATGAAACAGCTCCAAGGAC 320
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 GGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGAGAATGAAACAGCTCCAAGGAC 239
Query 321 TTACTCATGGCCTGATAACAAGAGGCCAAGGGTGTGCATTCTAGGTGGTGGCTTTGGAGG 380
|||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 240 TTACACATGGCCTGATAACAAGAGACCAAGGGTGTGTATTCTAGGTGGTGGGTTTGGAGG 299
Query 381 ATTGTACACAGCTTTGAGATTAGAATCTCTTGTTTGGCCTGAAGACAAAAAGCCTCAGGT 440
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 300 ATTGTACACAGCTTTGAGATTAGAATCGCTTGTGTGGCCTGAAGACAAAAAACCTCAGGT 359
Query 441 GGTTTTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTC 500
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 360 TGTTCTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCGATGTTGTATGAACTTCTCTC 419
Query 501 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGG 560
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTACTTACAAACACGGG 479
Query 561 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTTAA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTGAA 539
Query 621 TGGGTCTGAGATTTCTGTTACTGGAGGAACCGTCTTGCTCGAAAGCGGTTTTAAAATCGA 680
||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 540 TGGGTCTGAAAGTTCTGTTACTGGAGGAACTGTCTTGCTCGAAAGCGGTTTTAAAATTGA 599
Query 681 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGCGC 659
Query 741 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTAGGGTTAACGAAAAGCT 800
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 660 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCTATTAGAGTTAACAAAAAGCT 719
Query 801 GAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGG 860
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 720 GAGTAAATTGGAGAGGAAGAATTTCAAAGACGGCTCTGCCATAAAAGTGGCTGTTGTTGG 779
Query 861 CTGCGGTTATGCAGGAGTAGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 920
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTGCGGATATGCAGGAGTTGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 839
Query 921 AATAGTGCAGTCCATTAACGTATCAAAGAATATACTAACATCAGCCCCTGATGGGAACAG 980
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 840 AATAGTGCAGTCCATTAACGTATCAAAGGATATACTAACATCAGCCCCTAATGGGAACAG 899
Query 981 AGAAGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTCTTAGGTTATCTTGT 1040
|| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 900 GGAGGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTTTTGGGTTATCTGGT 959
Query 1041 TCAATCCATAAAGAGAGCAAGCAACCT-AGAAGAAGATGAAGGATATTTTTTAGAGCTTC 1099
|||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||
Sbjct 960 TCAATCCATAAAGAGAGCAAGCGA-CTCAGAAGAAGATGAAGGATATTTGTTAGAGCTTC 1018
Query 1100 AACCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1159
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1078
Query 1160 TTGGTGCTAAGCCTTTGCTTACTAAATTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1219
| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1079 TCGGTTCTAAGCCTTTGCTTACCAAACTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1138
Query 1220 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATAT 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATTT 1198
Query 1280 TTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAG 1339
|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1199 TTGCATTAGGTGATTCTTCTTCTCTAAGAGACTCAAATGGAAAGCTTCTTCCTACAACAG 1258
Query 1340 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATAAATA 1399
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1259 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATTTGGGCAGCCATAAATA 1318
Query 1400 ACCGACCTTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1459
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACCGACCGTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1378
Query 1460 ATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTC 1519
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1379 ATGATGCTGCTATTTCGCCAAGTTTCATTGAAGGGCTTACTCTTGAAGGTCCAATTGGCC 1438
Query 1520 ACGCAGCGAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTATGG 1579
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1439 ACGCAGCAAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTAAGG 1498
Query 1580 TCAGAATCAGTTGGTTTGCTAAATCTGCTGTTGATTCAATTGCTTTACTTCAGAGCAATC 1639
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1499 TCGGAATCAGTTGGTTTGCTAAATCTGCTGTTGACTCAATTGCTTTACTTCAGAGCAATC 1558
Query 1640 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1686
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1605
> Ahg948554 jgi|Araly1|948554|scaffold_800441.1
Length=262
Score = 148 bits (80), Expect = 1e-34
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 689 GGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGCAATGGAGT 748
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 94 GGTTGGTTCTTGCCCTCGGCGCTGAATCTAAACTTGATGTTGTTCCCGGCGCAATGGAGT 153
Query 749 TGGCTTTCCCATTCTACACTCTTGAAGATGCCATT 783
||||||||||||||||||||||||||||||| |||
Sbjct 154 TGGCTTTCCCATTCTACACTCTTGAAGATGCTATT 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5