BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08750.3
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487719 jgi|Araly1|487719|fgenesh2_kg.6__853__AT5G08750.3 2052 0.0
Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 549 2e-155
> Ahg487719 jgi|Araly1|487719|fgenesh2_kg.6__853__AT5G08750.3
Length=1319
Score = 2052 bits (1111), Expect = 0.0
Identities = 1269/1342 (95%), Gaps = 24/1342 (2%)
Strand=Plus/Plus
Query 32 GATTCTCGCTTCTTACTACATGTGTATCAATCGATCTCTACCCAGATTCTCCGGAGGAGC 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTCTCGCTTCTTACTACATGTGTATCAATCGATCTCTACCCAGATTCTCCGGAGGAGC 60
Query 92 TTTGAGTCTTGTCGTATAGATGCAGTGAAGGTCCTTTGTTAGATGGGAAAACTTGTTCTT 151
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTTGCGTCTTCTCGTATAGATGCAGTGAAGGTCCTTTGTTAGATGGGAAAACTTTTTCTG 120
Query 152 GAGTTGTCAAAAGAGAATCAGTTGGAGACTACCGATTGTGGAGTCAGTGATCACGGTTCT 211
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 121 GAGTTGTCAAAAGAGAATCAGTTGGAGACTACCAATTGCGGAGTCAGTGATCACGGTTCT 180
Query 212 CCACCTATCAAGAATGAAGAACATGAGGCACCACGTTACAGTTCAGACAAAGACACGGGT 271
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACCTATCAAGAACGAAGAACATGAGGCACCACGTTACAGTTCAGACAAAGACACGGGT 240
Query 272 TTACCAACTTGCCGTGTATGCCAGTGTGCAGAATCTGATAGAAGAGGAGATGCTGCTTTA 331
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTACCAACTTGCCGTGTGTGCCAGTGTGCAGAATCCGATAGAAGAGGAGATGCTGCTTTA 300
Query 332 GGGTTTTTGGGAATTACTCCTCCGGTTTCAGAACCTCGTAGAAGCAATGCGGGTGAAGAA 391
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 301 GGGTTTTTGGGGATTACTCCTCCGGTTTCAGAACCTCGCAGAAGCAATGCGGGCGAAGAA 360
Query 392 ACCGTTGATCAGAGAAGCTCGGTTGTCAAATCTAGCGGATTCATCGAACTGATAAGTCCT 451
||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 361 ACCGTTGATCAGAAAAGCTCGGTTAACAAATCTAGTGGATTCATCGAACTAATAAGTCCT 420
Query 452 GATGGAGAAGTTTTTGTTTGTGCAAACGACGATATAGAAATGGGAGCGTGGCAGCATCGA 511
|||||||| ||||| ||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 421 GATGGAGAGGTTTTCGTTTGTGCAAATGGCGATATAGAAATGGGAGCGTGGCAACATCGA 480
Query 512 GATAAGTTGCTAGAACTTGGATGTTCTTGCAAGAATGATCTCGCTTTGGTACACTATGCT 571
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 481 GATAAGTTGCTAGAACTCGGATGTTCTTGCAAGAATGATCTTGCTTTGGTACACTACGCT 540
Query 572 TGTGCATTGAAATGGTTTGTCAACCACGGATCAACTGTTTGTGAGATATGCGGAAAAACC 631
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 541 TGTGCATTGAAATGGTTCGTCAACCACGGATCAACAGTTTGTGAGATATGTGGAAAAACC 600
Query 632 ACGGAGAATATAAGAACAGTTGATTTCAACAAAGTGGTTATCGCCTTAAAAGATTACGCA 691
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GCGGAGAATATAAGAACAGTTGATTTCAACAAAGTGGTTATCGCTTTAAAAGATTACGCA 660
Query 692 GCGCTAAGAGAAAGAACAGCGGATGGAGATCCAAATCCTGTAGTGGTTAACAACAACACC 751
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 661 GCGCTAAGAGAAAGAACAGCGGATGGAGATCCAAATCCTGTCGCGGTTAACAACAACACG 720
Query 752 AGTTCGTCAGGGATTGATCCTGATGCAGTTGCAGCCATTCGAAGGCAACGACTTAGTGAG 811
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTTCTTCAGGAATTGATCCTGATGCAGTTGCAGCCATTCGAAGGCAACGACTTAGTGAG 780
Query 812 ATATCGTTATGGTTTGGTCCTCATTGTTCAACCAACAACAACAATAGTAGTAATTCCGCT 871
|| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
Sbjct 781 ATTTCGTTATGGTTTGGTCCACATTGTTC-A--AACAACAACAATAGTAGTAATTCCGGT 837
Query 872 GCTGCAGGGACGGCTTCTTCTCAGGTTACATCTGAACAACCTGTGGGTATAGTAAACTTT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTGCAGGGACGGCTTCTTCTCAGGTTACATCTGAACAACCTGTGGGTATAGTAAACTTT 897
Query 932 GATATCTTGCCTATGGAAAGCCGTGCGACTAAATGGGCGGTGGAAGGTACCGGAATACTA 991
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 898 GATATCTTGCCTATGGAAAGCCGTGCGACCAAATGGGCGGTTGAAGGTACCGGAATACTA 957
Query 992 CTTGCAACCGGATTACTCACAGTTACTTTGGCTTGGCTCATTGCTCCTCGTGTCGGAAAG 1051
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 958 CTTGCAACCGGATTACTCACTGTTACTTTGGCATGGCTCATTGCTCCTCGTGTCGGAAAG 1017
Query 1052 AGAACTGCAAAGAGTGGTCTACACATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTC 1111
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGAACTGCAAAGAGTGGACTACACATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTC 1077
Query 1112 ATCTTCTTCAGATTCGTTGTGCTGACAAGAATCAGGTACGGACCAGCACGTTACTGGGCA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATCTTCTTCAGATTCGTTGTGCTGACAAGAATCAGGTACGGACCAGCACGTTACTGGGCA 1137
Query 1172 ATATTGTTCGTCTTCTGGTTTCTTGTGTTTGGCATTTGGGCTTCACGTTCACACGCTTCT 1231
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCTTGTTCGTCTTCTGGTTTCTTGTGTTTGGCATTTGGGCTTCACGTTCACACGCTTCT 1197
Query 1232 CACTCCTCCACATGATAAATTCTCCATCATCCTTCAAGACACAAAATGTACTCTTTTTGG 1291
||||||||||||||||||||||| |||||||||| | | | || ||
Sbjct 1198 CACTCCTCCACATGATAAATTCTTCATCATCCTT------------T-T--T-TT---GG 1238
Query 1292 TCTCTGTCAATATCATGTACGTTATTCTCTTTCAAGACACAAAATGTACAATTAATTACT 1351
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1239 TCTCTGTCAATATCGTTTACGTTATTCTCTTTCAAAACACAAAATGTACAATTAATTACT 1298
Query 1352 CTTATCa-aaaagaaaaaaaGG 1372
||| ||| |||| |||||||||
Sbjct 1299 CTTGTCAGAAAA-AAAAAAAGG 1319
> Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1
Length=1618
Score = 549 bits (297), Expect = 2e-155
Identities = 656/821 (80%), Gaps = 58/821 (7%)
Strand=Plus/Plus
Query 431 TTCATCGAACTGATAAGTCCTGATG-GAGAAGTTTTTGTTTGTGCA-AACGACGATATAG 488
||||||||| ||| ||||||||||| | |||| |||| || |||| || | |||||||
Sbjct 702 TTCATCGAAATGACAAGTCCTGATGCG-GAAG-TTTTCATT-TGCACAA--ATGATATAG 756
Query 489 AAATGGG-AGCGTGGCAGCATCGA-GAT-AAGTTGCTAGAACTTGGATGTTCTTGCAAGA 545
||||||| | | || ||||| | ||| | ||||| || ||||||||||||||||| |
Sbjct 757 AAATGGGAATC-CAGCTGCATC-AGGATGCA-TTGCTTGAGCTTGGATGTTCTTGCAAAA 813
Query 546 ATGATCTCGCTTTGGTACACTATGCTTGTGCATTGAAATGGTTTGTCAACCACGGATCAA 605
| || || |||||||||||||| ||||| ||| | || |||||| ||||||| ||||| |
Sbjct 814 ACGAGCTTGCTTTGGTACACTACGCTTGCGCACTCAAGTGGTTTCTCAACCATGGATCCA 873
Query 606 CTGTTTGTGAGATATGCGGAAAAACC-ACGGAGAATAT-AAGAACAGTTGATTTCAACAA 663
| || ||||| || || || | | || | || ||||| ||| || | ||||||||||||
Sbjct 874 CCGTGTGTGAAATCTGTGG-ACATCCTGCAGAAAATATAAAG-ACTGCTGATTTCAACAA 931
Query 664 AGTGGTTATCGCCTTAAAAGATTACGCAGCGCTAAGAGAAAGAACAGCGGAT---GGAGA 720
|||| | || ||||| | ||||||| |||| |||||||||||||| || ||| |||||
Sbjct 932 AGTGCTCATTGCCTTGAGAGATTACACAGCACTAAGAGAAAGAACCGCTGATGGAGGAGA 991
Query 721 TCCAAAT-CCTGTAGTGGTTAACAACAACACCAGTTCGTCAGGGATTGATCCTGATGCAG 779
||| ||| |||||| ||| | | ||| | ||| || ||| | |||| ||
Sbjct 992 TCC-AATCCCTGTA----TTAGCGGTGAGTGCAGAT--TCAACCATAGATTCAGATGAAG 1044
Query 780 TTGCAGCCATTCGAAGGCAACGACTTAGTGAGATATCGTTATGGTTTGGTCCTCATTGT- 838
|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1045 TTGCTGCCATTCGAAGGCAACGACTTAGTGAGATATCGTCATGGTTTGGTCCCCATTCCC 1104
Query 839 TCAACCAACAACAACAATAGTAGTAATTCCGCTGCTGCAGGGACGGCTTCTTCTCAGGTT 898
| ||| ||||||||||||||| | | | | ||| || | |||| | ||| |
Sbjct 1105 TGAAC-AACAACAACAATAGT--TC-T---G-T--TGC-GG--C---TTCT-C--AGGCT 1145
Query 899 A-CATCTGAACAACCTGT-GG-GTATAGTAAACTTTGATATCTTGCCTATGGAAAGCCGT 955
| | |||| |||||| | || || | || |||||||| ||||| |||||||||||||||
Sbjct 1146 ATCC-CTGACCAACCTTTAGGAGT-T-GTGAACTTTGACATCTTACCTATGGAAAGCCGT 1202
Query 956 GCGACTAAATGGGCGGTGGAAGGTACCGGAATACTACTTGCAACCGGATTACTCACAGTT 1015
|| ||||||||||| ||||||||||| || || |||||||| ||||| |||||||| |||
Sbjct 1203 GCAACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACCGGTTTACTCACTGTT 1262
Query 1016 ACTTTGG-CTTGGCTCATTGCTCCTCGTGTCGGAAAGAGAACTGCAAAGAGTGGTCTACA 1074
||||||| || |||||||||| |||||||| ||||||| |||||| | ||| || || ||
Sbjct 1263 ACTTTGGTCT-GGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCA 1321
Query 1075 CATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTCATCTTCTTCAGATTCGTTGTGCT 1134
||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1322 CATCCTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCT 1381
Query 1135 GACAAGAATCAGGTACGGACCAGCACGTTACTGGGCAATATTGTTCGTCTTCTGGTTTCT 1194
|| ||||||||||| || || ||||| ||||||||||| || ||| |||||||||||||
Sbjct 1382 CACTAGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCT 1441
Query 1195 TGTGTTTGGCATTTGGGCTTCACGTTC-ACACGCTTCTCAC 1234
||||||||| ||||||||||| ||||| | | |||||||||
Sbjct 1442 TGTGTTTGGTATTTGGGCTTCTCGTTCTA-ATGCTTCTCAC 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5