BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08760.1
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325471 jgi|Araly1|325471|fgenesh1_pm.C_scaffold_6000691 327 3e-89
> Ahg325471 jgi|Araly1|325471|fgenesh1_pm.C_scaffold_6000691
Length=243
Score = 327 bits (177), Expect = 3e-89
Identities = 227/249 (91%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 8 ATGTCTAAAGAGAAATCATATGTAATTGCTCTTCTTCTATCTTTGCTTCTCTGTCTTTCT 67
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCTAAAGAGAAATCATATATAATTGCTCTTCTTCTATCTTTGCTTCTATGTCTTTCT 60
Query 68 TTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGTTACTACAAGGTACTCGGATTCT 127
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGTTACTACAAGGTACTCGGATTCT 120
Query 128 CCTCGATGCGCCAATGGATCTTCTGCAAGTCCACCA--AC-AAGACACTGTCCAAGGGGG 184
| |||||||||||| ||||||||||||||||||| || |||||||| ||| |||||
Sbjct 121 C---GATGCGCCAATGAATCTTCTGCAAGTCCACCACCACCAAGACACTACCCACGGGGG 177
Query 185 CGTCCCCGTCCTCCTACACCG--AGAG-TAGCGGTGCACTCTAACTCAACCAAAGGAAAA 241
|||||||||||| ||| | | ||| | ||||||||||||||||||||||||||||||
Sbjct 178 CGTCCCCGTCCTG-TAC-CGGTTAGATCT-GCGGTGCACTCTAACTCAACCAAAGGAAAA 234
Query 242 GGCCCATAA 250
|||||||||
Sbjct 235 GGCCCATAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13888634396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5