BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08770.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940370 jgi|Araly1|940370|scaffold_600914.1 1328 0.0
> Ahg940370 jgi|Araly1|940370|scaffold_600914.1
Length=932
Score = 1328 bits (719), Expect = 0.0
Identities = 847/908 (93%), Gaps = 12/908 (1%)
Strand=Plus/Plus
Query 1 AAATCGG-AAATGCTTCCATTAAAGCTTGCTCGATCTCTTCTTCTCCACGAGACTCTCAA 59
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 12 AAATCGGAAAATGCTTCCACTAAAGCTTGCTCGATCTCTTCTTCTCCACGAGACTCTCGA 71
Query 60 TCTCACTCATAATTCCGGCGATACAGACGACGTTGATGAAGACGGAGAAACCAGTATCCG 119
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 72 TCTCACTCACAATCCCGGCGATACAGACGACGGCGATGAAGACGGAGAAACCAGTATCCG 131
Query 120 GCAAATTC-TAAGCTCCTACAAGCAATCAAAAACCCGATCGAGATCCGATAACAACAAGA 178
||||| || ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 132 GCAAA-TCTTAAGCTCCTACAAGCAATCAAAAACCCGATCGAGATCCGAT---AAC-A-A 185
Query 179 CGAGAAATTCGAAAACCCCATTGCTATACTTCGTTCCAACACGAGAATTGATCTCAGATA 238
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 186 -GAGAAATTCGAAAATCCCATTGCTCTACTTCGTTCCAACACGAGAATTGATCTCAGATA 244
Query 239 CATACCGATTAGCAACAATCGGGAGAGATCTAGGTATGGATATGTACCCAACACCATCAC 298
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct 245 CATACCGATTAGCCACAATCGCGAGAGATCTAGGTATGGATTTGTACCCAACACCATCGC 304
Query 299 TCTCTCACATCATCTTCTCATTCCCATCGCCAGAATCAAAATCGCCGTCACCTTTCTCTT 358
|||||||||| |||||||||||||| |||| |||||| ||||||||||| ||||||||||
Sbjct 305 TCTCTCACATTATCTTCTCATTCCCGTCGCGAGAATCGAAATCGCCGTCGCCTTTCTCTT 364
Query 359 CTTCATCGCATCCTTCGACATGGTCGTCTTCTGCTTCGCTATCGTCGTCTCTCTCGTGGT 418
| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 365 CATCGTCGCATCCTTCGACGTGGTCGTCTTCGGCTTCGCTATCGTCGTCTCTCTCGTGGT 424
Query 419 CTCTTCCTAACGACGCCGTAATGctctccttcccgtctctctctgcctcatcgctctctc 478
||||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||| |
Sbjct 425 CTCTTCCAAACGACGCCGTAATGCTCTCATTCCCATCTCTCTCCGCCTCATCACTCTCCC 484
Query 479 atctccgatccttcgtctccctctccaacggtctctTCAAACTCGTCTTCTCCGCAACCA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 485 ATCTCCGATCCTTCGTCTCCCTCTCCAACGGTCTCTTCAAACTCGTCTTCTCCGCCACCA 544
Query 539 CCGTAGAAACATCTCCCTCTT-C-C-TCCGGATCTGTTAGCAACTGGGACTGCTGCTCCG 595
||||||| |||||| |||||| | | |||||||| |||||||| ||||| ||||||||||
Sbjct 545 CCGTAGAGACATCTTCCTCTTCCTCATCCGGATCCGTTAGCAATTGGGATTGCTGCTCCG 604
Query 596 TTTCACTCTTCTCAAAAATCGCCAACAAGCGAATCGGATCGATGGAGAGTTTTTCGAATG 655
|||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 605 TTTCTCTCTTCTCAAGAATCGCCAACAAGCGAATCGGATCAATGGAGAGTTTCTCGAATG 664
Query 656 CATTGGCTTCAAAAGGATGGACAATTTACAAAACGAAAGAGAATCCGACGCCGGAATCTA 715
|||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 665 CATTGGCTTCGAAAGGATGGACAATTTACAAGACGAAAGAGAATCCGTCGTCGGAATCTA 724
Query 716 CTACCAACGGAGTGAGCTCAGTGTATCTGTTTAGGAAAGTGTATACTGGTCGGATCATGA 775
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 725 CTAGCAACGGAGGGAGCTCAGTGTATCTGTTTAGGAAAGTGTATACGGGTCGGATCATGG 784
Query 776 CCCGAGAAGGAAACGGGTCGTGTAGAGTAAGAGAGCTGAGACTTCCTCAATTGGATTTCA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 785 CCCGAGAAGGAAACGGGTCGTGTAGAGTAAGAGAGCTGAGACTTCCTCAATTGGATTTTA 844
Query 836 GGAACGCACCTCTACGGATTCTGCAATATTTGATGTTGATGACTGACGATATATTTTTCC 895
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 845 GGAACGCACCTCTACGGATTTTGCAATATTTGATGTTGATGACTGACGATATCTTCTTCC 904
Query 896 TTGCGTAA 903
||||||||
Sbjct 905 TTGCGTAA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5