BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08780.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487721 jgi|Araly1|487721|fgenesh2_kg.6__855__AT5G08780.1 2396 0.0
> Ahg487721 jgi|Araly1|487721|fgenesh2_kg.6__855__AT5G08780.1
Length=1610
Score = 2396 bits (1297), Expect = 0.0
Identities = 1492/1585 (94%), Gaps = 17/1585 (1%)
Strand=Plus/Plus
Query 41 CAATGGCGGCTTCTGCTACATTAATGTCTATGGCACATGAAAGAAAAGTTGAGAATCTGA 100
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 30 CAATGGCGGCTTCTGCTATATTAATGTCTATGGCACACGAAAGAAAAGTTGAGAATCTGA 89
Query 101 GAGGTTTTATGGTGAATTTGGCGAATTCAAGAGACTTTTCCCTTCCTGAGACTAAAC-TC 159
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 90 GAGGTTTTATGGTGAATTTGGCGAAATCAAGAGGCTTTTCCCTTCCTGAGACTAAACGT- 148
Query 160 TTCCAACAGAAATTCTTGGATCTGTGTTTATCCCGTACTCCTGATCATCCCACTTATTCC 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTCCAACAGAAATTCTTGGATCTGTGTTTATCCCGTACTCCTGATCATCCCACTTATTCC 208
Query 220 GCTATGATATTTATTGCTATCATGGATTTGAATAAAGAAGGTGGCGCAAGTGAAGATGCT 279
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 209 GCTATGATATTTATTGCTATTATGGATTTGAATGAAGAAGGTGGCGCAAGTGAAGATGTT 268
Query 280 ATATCTGAGTTTATAAAGTCGAAATACAAGAACTTGCCATTTGCTCACACGAATTTGCTT 339
|||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||
Sbjct 269 ATATCTGAGTTTATAAAGTCCAAGTACAAGAACTTGCCATTTGCTCACAAGAGTTTGCTC 328
Query 340 AGTCATCATTTAGCTAAGCTTGTGGAGAAAAGAGAGATACTTTGTGACTGCAACAACGAC 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 329 AGTCATCATTTAGCTAAGCTTGTGGAGAAAAGAGAGATACTTTGTGACTGCAACAGCTAC 388
Query 400 TGTTACTCTCTCCCGGGTGAGAAGAAGACTGTTGCTTCCACTGATGTTCAGAGAAAGAGC 459
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 389 TGTTACTCTCTCCCGGGTGAGAAGAAGACTGTTGCTTCCACTGATGATGAGAGAAAGAGC 448
Query 460 GATCTGATAACAGTGAGAACAAATGATCAGCGTGCGGCGGATGAGGTTATGACTTGCCAA 519
| | ||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||
Sbjct 449 GCTGTGATAACAGTGAGAAAAAATGATAAGCGTGTGGCGAATGAGGTTATGACTTGCCAA 508
Query 520 AACAAGGAAGAAAGTGTTGAAATTTTGAAGTCTGGGGATCCTAAGGTTGTTTTGTTGGAA 579
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 509 AACGAGGAAGAAAGTGTTGAAATTTTGAAGTCTGGGGATCGTAAGGTTGATTTGTTGGAA 568
Query 580 GAACAGAGTTTGACTAAATCCCGAACCGGCTCCAAACGTAAAGCATGTTGTGTCATTAAC 639
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 569 GAACAGAGTTTGACTAAATCCCGAACTGGCTCCAAACGTAAAGCATGTTGTGCCATTAAA 628
Query 640 GTCATTGAAGTAATGG-ACACAGAAGATAATGGATTCAAAGCAGGTTTAAGGGATTCGAC 698
||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 629 GTCATTGAAGTAA-GGCACACAGAAGATAATGGAGTCAAAGCAGATTTAAGGGATTCGAC 687
Query 699 TGTTCAAATTCCTAGGAAAGAGGGAGTTG-T--TG-A--AGTAGTAGATGTAGAAAATAG 752
| |||||| |||||||||||||||||||| | | | || ||| | ||| ||||||||
Sbjct 688 TATTCAAACTCCTAGGAAAGAGGGAGTTGCTGAAGAACCAGGAGTGGCTGTTGAAAATAG 747
Query 753 TGAGAATGAAGCTAGGATTGAAGCAAACAGTAGAGGAGGTGAATTATATGAAGTGGCTGT 812
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 748 TGAGACTGAAGCTAGGACTGAAGCAAACAGTAGAGGAGGTGAATTATATGAAGTAGCTGT 807
Query 813 TCTATATAAGCAGAATGATGTGTTGATGGAAGAGTCGGGTAAAGAAGCAATGGAAACAAG 872
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 808 TCTATATAAGCAAAATGATGTGTTGACGGATGAGTCGGGTAAAGAAGCAATGGAAACAAG 867
Query 873 CTCAATAGTGAGAAAAGCAAAACTGCGCAGAACATCTAACACAACGAAAGAA--A-ATGT 929
||||| || ||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 868 CTCAAAAGAGAGAAAAGCAAAACTGCGCAGAACATCTAACACGACGAAAGAAGCATGTGT 927
Query 930 GGAAGTCACGAGTGAAGCATATAAAAAACTTTGGGAGTGCCAAACCGAAGCATGCAGCAA 989
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GGAAGTGACGAGTGAAGCATATAAAAAACTTTGGGAGTGCCAAACCGAAGCATGCAGCAA 987
Query 990 TATCATTGCTCTAGAGAAAATGCTAAAACAGTGCAAAGAGAAAGACCAGCAGAACAAAGC 1049
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 988 TATCATTGCTCTAGAGAAAATGCTAAAACAGTGGAAAGAGAAAGACCAGCAGAACAAAGC 1047
Query 1050 TGTTTCAGAAATTGATGATGTTTCTCGTTTGCCTTTATCAATGGAAAGCTGCAGAGAACT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TGTTTCAGAAATTGATGATGTTTCTCGTTTGCCTTTATCAATGGAAAGCTGCAGAGAACT 1107
Query 1110 GTGGAAGGCTGCCCAAAAGTTACAAAGCCAGCTCTCTGAGATCATCGATTCATGTGATGA 1169
||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1108 GTGGAAGGCTGCCCAAAAGATACAAAACCAGCTCTCTGAGATCATTGATTCCTGTGATGA 1167
Query 1170 AACCGTGGTTCCATATTCTGTATCTCCAGGATGTGAACTCGAAGGTATAAGCAAAGGATT 1229
|||||||||||||||||||| |||||||||||||||| |||||||| | |||||||||||
Sbjct 1168 AACCGTGGTTCCATATTCTGAATCTCCAGGATGTGAAATCGAAGGTCTTAGCAAAGGATT 1227
Query 1230 ATGCAAAGAGGATCCCAAAATGAAGACTCCTCGTGGGAATAATGGATCTGAAAAACCCTC 1289
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1228 ATGCAAAGAGGATCCCAAAATGAAAACTCCTTGTGGGAATAGTGGATCTGAAAAACCCTC 1287
Query 1290 CACACAGCTTGAACAGAAGGAAAGAGAGAAGTCTTC-CAAAAAGAAACCTCAGGTCAAGA 1348
|| |||| ||||||||||||||||| |||||| ||| ||||| |||||| ||||||||||
Sbjct 1288 CAAACAGATTGAACAGAAGGAAAGACAGAAGTGTTCTCAAAA-GAAACCACAGGTCAAGA 1346
Query 1349 AAACGAGAATCAAAAGTCTCAGAGACATAGGAATAACAGCTGTGAGGAAATCGCCTCGAT 1408
|||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1347 AAACGAGAATCAAAAGACTCCGAGACATAGGAACAACAGCTGTGAGGAAATCGCCTCGAT 1406
Query 1409 TCAGCTGATGATACTCATCAAAAA-ATGCTTCCGGAGAGCATGATATCTCATAAAGGTTA 1467
||||||||||| |||||| ||||| ||||||| | |||||||||||| | ||||||||||
Sbjct 1407 TCAGCTGATGAAACTCAT-AAAAATATGCTTCTGAAGAGCATGATATTTTATAAAGGTTA 1465
Query 1468 GGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATTTGAATATAAA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGTTGTTATTTAATATCAGTATCTACATAAGTGCAACATCTTGAAGAATTTGAATATAAA 1525
Query 1528 TTTTTAGTTTTCATATAAACTTCTCATGAAAGAACAAGAATGTGCCTGCTAATGAGACAT 1587
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1526 TTTTTAGTTTTCATATAAATTTCTCATGAAAGAACAAGAATGTGCCTGCTAATGAGGCAT 1585
Query 1588 TGATGCTAAAAGCTATTAACATTCT 1612
||||||||||| |||||||||||||
Sbjct 1586 TGATGCTAAAACCTATTAACATTCT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5