BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08790.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940372 jgi|Araly1|940372|scaffold_600916.1 1498 0.0
Ahg487721 jgi|Araly1|487721|fgenesh2_kg.6__855__AT5G08780.1 270 1e-71
Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1 87.9 2e-16
> Ahg940372 jgi|Araly1|940372|scaffold_600916.1
Length=892
Score = 1498 bits (811), Expect = 0.0
Identities = 865/892 (97%), Gaps = 0/892 (0%)
Strand=Plus/Plus
Query 99 CAACAGACAAGAAGAAGAGAATGAAGTCGGAGCTAAATTTACCAGCTGGGTTCCGATTCC 158
||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 1 CAACAGAGAAGAAGAAGAGAATGAAGGCGGAGCTTAATTTACCGGCTGGGTTCCGATTCC 60
Query 159 ATCCAACGGACGAGGAGCTTGTGAAATTCTACTTGTGCCGGAAATGTGCTTCCGAGCAGA 218
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 ATCCAACGGACGAGGAGCTTGTGAAATTCTACTTGTGCCGGAAATGTGCATCGGAGCAGA 120
Query 219 TCTCGGCTCCGGTTATCGCCGAGATTGATCTCTACAAGTTCAATCCTTGGGAGCTTCCAG 278
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TCTCGGCTCCGGTTATCGCCGAGATTGATCTGTACAAGTTCAATCCTTGGGAGCTTCCAG 180
Query 279 AGATGTCTCTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCTAGAGATCGGAAATACC 338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACATGTCTCTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCTAGAGATCGGAAATACC 240
Query 339 CAAACGGTTCGCGTCCTAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGGAGCAG 398
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTAACGGTTCGCGTCCAAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGGAGCAG 300
Query 399 ATAAACCGATTGGTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCAG 458
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 ATAAACCTATTGGTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCTG 360
Query 459 GGAAAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTCGCTAATG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAAAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTCGCTAATG 420
Query 519 TTGATAGATCAGCTTCTGTTAACAAAAAGAACAACCTACGACTTGATGATTGGGTTTTAT 578
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGATAGATCAGCGTCTGTTAACAAAAAGAACAACCTACGACTTGATGATTGGGTTTTAT 480
Query 579 GTCGAATATACAACAAGAAAGGAACCATGGAGAAGTATTTCCCCGCGGATGAGAAGCCGA 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GTCGAATATACAACAAGAAAGGAACCATGGAGAAGTATTTCCCCGCGGATGAGAAACCGA 540
Query 639 GGACCACGACAATGGCTGAACAGTCATCATCACCTTTTGATACATCAGACTCGACTTACC 698
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 541 GGACGACGACAATGGCTGAACAGTCATCATCGCCTTTTGATACATCGGACTCGACTTACC 600
Query 699 CGACATTGCAAGAGGATGATTCCAGCAGCTCAGGTGGTCACGGTCACGTGGTGTCACCGG 758
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 601 CGACATTGCAAGAGGATGATTCGAGTAGCTCAGGTGGTCACGGTCACGTGGTGTCACCGG 660
Query 759 ATGTTTTGGAGGTTCAGAGCGAGCCTAAATGGGGAGAGCTTGAGGATGCTTTGGAAGCTT 818
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 ATGTTTTGGAGGTTCAGAGCGAGCCTAAATGGGGAGAACTTGAGGATGCTTTGGAAGCTT 720
Query 819 TTGATACTTCAATGTTTGGTAGTTCCATGGAGTTGTTGCAGCCTGACGCTTTTGTCCCTC 878
|||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 721 TTGATACTTCCATGTTTGGTGGTTCCATGGAGTTGTTACAGCCTGAGGCTTTTGTCCCTC 780
Query 879 AGTTCTTGTATCAGTCTGATTATTTCACTTCCTTCCAGGATCCGCCTGAGCAGAAACCAT 938
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 AGTTCTTGTATCAGTCGGATTATTTCACTTCCTTCCAGGATCCGCCGGAGCAGAAACCAT 840
Query 939 TCTTGAATTGGAGTTTTGCTCCACAGGGGTAAAAACGGAAGAGACCAAAAAA 990
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TCTTGAATTGGAGTTTTGCTCCACAGGGGTAAAAACGGAAGAGACTAAAAAA 892
> Ahg487721 jgi|Araly1|487721|fgenesh2_kg.6__855__AT5G08780.1
Length=1610
Score = 270 bits (146), Expect = 1e-71
Identities = 152/155 (98%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 1077 AGAATGTTAATAGCTTTTAGCATCAATGTCTCATTAGCAGGCACATTCTTGTTCTTTCAT 1136
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1610 AGAATGTTAATAGGTTTTAGCATCAATGCCTCATTAGCAGGCACATTCTTGTTCTTTCAT 1551
Query 1137 GAGAAGTTTATATGAAAACTAAAAATTTATATTCAAATTCTTCAAGATGTTGCACTTATG 1196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GAGAAATTTATATGAAAACTAAAAATTTATATTCAAATTCTTCAAGATGTTGCACTTATG 1491
Query 1197 TAGATACTGATATTAAATAACAACCTAACCTTTAT 1231
|||||||||||||||||||||||||||||||||||
Sbjct 1490 TAGATACTGATATTAAATAACAACCTAACCTTTAT 1456
> Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1
Length=1248
Score = 87.9 bits (47), Expect = 2e-16
Identities = 172/230 (75%), Gaps = 17/230 (7%)
Strand=Plus/Plus
Query 292 CGGAGAGAAAGAGTGGTACTTCTTCTCA--CCTAGAGATCGGAAATACCCAAACGGTTCG 349
||| || ||||| ||||| || || ||| || || ||| |||| || || ||||| |||
Sbjct 313 CGGTGAAAAAGAATGGTA-TT-TTTTCAGCCCAAGGGATAGGAAGTATCCGAACGGGTCG 370
Query 350 CGTCCTAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGG-AGCAGAT-AA---A- 403
| ||||| |||| || ||| | |||||||||||||| ||||| | | ||| || |
Sbjct 371 AGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACCGGTA-CGGATAAAGTTAT 429
Query 404 C-CGATTG-GTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCAGGGA 461
| ||| | | || ||||| ||| ||||||||||||||| | || || ||| || |
Sbjct 430 CTCGACGGAGGGAA--GAAGA-GTT-GGTATCAAGAAAGCATTAGTGTTTTACATTGGAA 485
Query 462 AAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTC 511
|||| || ||||| | || ||||||||||| ||||||||||| ||||||
Sbjct 486 AAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTC 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5