BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09210.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350144 jgi|Araly1|350144|fgenesh1_pg.C_scaffold_6000737 1448 0.0
Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1 1042 0.0
> Ahg350144 jgi|Araly1|350144|fgenesh1_pg.C_scaffold_6000737
Length=1698
Score = 1448 bits (784), Expect = 0.0
Identities = 932/1003 (93%), Gaps = 12/1003 (1%)
Strand=Plus/Plus
Query 758 AGGTTGATGGATATTCCCTGATAGTAGAAGGAGACTCAAGCACCGATGATGAGAGTGACT 817
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 614 AGGTTGATGGATATTCCCTGATAATAGAAGGAGACTCAAGCACC---GATGAGAGTGACA 670
Query 818 GTGAGACTTCAGCTTATGAGGAGGCACGAGATAGCTTACTTCAGCGTGCCGACAAAATCT 877
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 671 GTGAGACTTCAGCTTATAAGGAGACACGAGATCGCTTACTTCAGCGTGCCGATAAAATCC 730
Query 878 TTAGTGATGCATCTGTGGTGTACTCCGAGCTTTCAAGGGTGAAGTCGATATTTAAAAGGG 937
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 731 TTAGTGTTGCATCTGTGGTGTACTCCCAGCTTTCAAGGGTGAAGACGATATTTAAGAGGT 790
Query 938 GTGCGCGACACCCTTCACCTGCTT-TCCGG-GCTGCTTACACGTCTTTGACCGTTCCTTC 995
|||||||| || | || |||||| | ||| | |||||||| ||||||||||||||||||
Sbjct 791 GTGCGCGAGACTATCCATCTGCTTGT-CGGAG-TGCTTACAAGTCTTTGACCGTTCCTTC 848
Query 996 CATGTATTCACCTTATCTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAGGATGT 1055
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 849 CATCTATTCACCTTATGTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAACATGT 908
Query 1056 CGATTTCTCTGACATGAATTGGCATGGACTGCTGTTTCATTCTAG-GATTGTGTGTGGTT 1114
||||||||||||||||| |||||||||||||||||| ||| | | ||||| | |||||
Sbjct 909 GGATTTCTCTGACATGAACTGGCATGGACTGCTGTTTGATTAT-GAGATTGGGAATGGTT 967
Query 1115 CTACACCAGTTTGTACTAATCCCAACTTTGTATCTGAGCTAGTGAAATATGTTGCGGTTC 1174
| |||||||||||||| |||| ||||||||||||||||||||| |||| |||||| |||
Sbjct 968 TTGCACCAGTTTGTACTGATCCTAACTTTGTATCTGAGCTAGTGGAATACGTTGCGATTC 1027
Query 1175 CCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCACCAGGGAGACGAGAA 1234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1028 CCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCACCCGGGAGACAAGAA 1087
Query 1235 ATGTTGTTGCTGCTACAAGCTTGGTGGCAAGATATGTTT-TTCCTTCGAGTGAGGCCCTA 1293
||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 1088 ATGCTGTTGCTGCTACAAGCTTGGTGGCAAGTTATGTTTATT-CTTCGAGTAAGGCCCTA 1146
Query 1294 GCGGAACTTTCTCTTGCTATTCATGCTCGCCTTGTTGAAGCCATTATAGCTATTAGTGTT 1353
||| |||| ||| ||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1147 GCGAAACTATCTGTTGCTCTTCGTGCTCGCCTTGTTGAAGCCATTACAGCTATTAGTGTT 1206
Query 1354 CCAACATGGGATCCTCAGGTATCAAAGGATGTACCTAATGCTCCACAAGTTGCAGCATAT 1413
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1207 CCGACATGGGATCCTCAGGTATCAAAGGCTGTACCTAATGCTCCACAAGTTGCAGCATAT 1266
Query 1414 AGGTTTGGGACATCAGTCCGTCTTATGAGAAATATTTGTATGTGGAAAGACGTCATGGAG 1473
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1267 AGGTTTGGGACATCAGTCCGTCTTATGAGAAATATATGTATGTGGAAAGACATGATGGAG 1326
Query 1474 CTTCCGGTCTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTTTGGAAAAGTTTTACCTCAT 1533
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CTTCCGGTGTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTTTGGAAAAGTTTTACCTCAT 1386
Query 1534 GTCAGAAGCATTGCATCAGAATCAAATATCCATGATGCTGTGACAAAAACTGAAAGGATC 1593
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1387 GTCAGAAGCATTGCATCAGAATCAAATATGCATGATGCTGTGACAAGAACTGAAATGATC 1446
Query 1594 GTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCACAAGAACCCACAGTCATCTG 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1447 GTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCACAAGAACCCACAGTCGTCTG 1506
Query 1654 CTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAATACTCGAGAAAAAGGTTTGC 1713
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1507 CTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAATACTCGAGAAAA-GGCTTGC 1565
Query 1714 CTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCGCAGG 1756
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1566 CTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCCCAGG 1608
> Ahg487696 jgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1
Length=3044
Score = 1042 bits (564), Expect = 0.0
Identities = 876/1022 (86%), Gaps = 39/1022 (4%)
Strand=Plus/Plus
Query 754 ATGAAGGTTGATGGATATTCCCTGATAGTAGAAGGAGACTCAAGCACCGATGATGAGAGT 813
||| || |||| |||| ||| |||| | |||||||||| ||||||| | ||||||||||
Sbjct 1642 ATGGAGATTGAAGGATCTTCTCTGAAAATAGAAGGAGAATCAAGCA-C--TGATGAGAGT 1698
Query 814 GACTGTGAGACTTCAGCTTATGAGGAGGCACGAGATAGCTTACTTCAGCGTGCCGACAAA 873
||| |||||||||||||||| ||||| || ||||||||||||||||| |||| || ||
Sbjct 1699 GACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTTACTTCAGTGTGCTGATAAG 1758
Query 874 ATCTTTAGTGATGCATCTGTGGTGTACTCCGAGCTTTCAAGGGTGAAGTCGATATTTAAA 933
|||||||||||||||||| || ||||||| ||||||||||||||||| ||| |||| |
Sbjct 1759 GTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAGGGTGAAGGCGAGATTTGAG 1818
Query 934 AGG-GGTGCGCGACACCCTTCACCTGCTT-TCCGGGCTGCTTACACGTCTTTGACCGTTC 991
||| || |||| || |||| | ||| | |||| |||||||| ||||||||||||||
Sbjct 1819 AGGTGG-AAGCGAGACTATTCATCAACTTAT-CGGGATGCTTACATGTCTTTGACCGTTC 1876
Query 992 CTTCCATGTATTCACCTTATCTAAGACTGGAGCTTTTGAGATGGGATCCTCTTCATCAGG 1051
| ||||| | |||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 1877 CCTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATGGGATCCTCTTCATCAAG 1936
Query 1052 ATGTCGATTTCTCTGACATGAATTGGCATGGACTGCTGTTTCATT-C---TAG---G-A- 1102
|||| ||||||| ||||||||| ||||||||| |||| ||| ||| | || | |
Sbjct 1937 ATGTGGATTTCTTTGACATGAAATGGCATGGATTGCTATTTGATTACGGGAAGCCAGAAG 1996
Query 1103 TTGTGTG-TGGTTCTACACCAGTTTG-TACTAATCCCAACTTTGTATCTGAGCTAGT-GA 1159
|| | | || || | |||||| || |||| || ||||| |||| |||||||||| ||
Sbjct 1997 ATG-GGGATGATTTTGCACCAG-ATGATACTGATGCCAACCTTGTCCCTGAGCTAGTAGA 2054
Query 1160 AATATGTTGCGGTTCCCATTTTGCACCATCGGATAGTTCGTTGCTGGGATATACTTAGCA 1219
|| | |||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2055 AA-AGGTTGCGATTCCCATTTTGCACCATCAGATAGTTCGTTGCTGGGATATACTTAGCA 2113
Query 1220 CCAGGGAGACGAGAAATGTTGTTGCTGCTACAAGCTTGGTGGCAAGA-TATGTTTTTCCT 1278
|| ||||||| ||||||| |||||||||||||||||||||| ||| | ||||||| | ||
Sbjct 2114 CCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAA-ATTATGTTTCTGCT 2172
Query 1279 TCGAGTGAGGCCCTAGCGGAACT-TTCT-CTTGCTATTCATGCTCGCCTTGTTGAAGCCA 1336
|||||||||||| |||| ||||| || | | |||||||| ||||||||||||||||||||
Sbjct 2173 TCGAGTGAGGCCTTAGCAGAACTATT-TGC-TGCTATTCGTGCTCGCCTTGTTGAAGCCA 2230
Query 1337 TTATAGCTATTAGTGTTCCAACATGGGATCCTCAGGTATCAAAGGATGTACCTAATGCTC 1396
|| |||| |||| ||||| ||||||||||| | ||||| |||| ||||||||||||||
Sbjct 2231 TTGCAGCTGTTAGCGTTCCGACATGGGATCCGCTGGTATTGAAGGCTGTACCTAATGCTC 2290
Query 1397 CACAAGTTGCAGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAAATATTTGTATGT 1456
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2291 CACAAGTTGCAGCATATAGATTTGGGACATCAGTCCGTCTTATGAGAAATATATGTATGT 2350
Query 1457 GGAAAGACGT-CATGGAGCT-TCCGGTCTTGGAGAAGTTGGCTCTGAGTGACCTTTTGTT 1514
|||||||| | | ||| ||| || | | |||||||| |||||||| ||||||||||||||
Sbjct 2351 GGAAAGACATTC-TGGCGCTCTCAG-TGTTGGAGAACTTGGCTCTTAGTGACCTTTTGTT 2408
Query 1515 TGGAAAAGTTTTACCTCATGTCAGAAGCATTGCATCAGAATCAAATATCCATGATGCTGT 1574
|||||||||| |||| ||||||||||||||||||||| ||| | | ||||||||||||
Sbjct 2409 TGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCA-AAT-A--T--CCATGATGCTGT 2462
Query 1575 GACAAAAACTGAAAGGATCGTTGCTTCTTTGTCTGGAGTATGGACTGGACCAAGTGTCAC 1634
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2463 GACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTATGGACAGGACCAAGCGTCAC 2522
Query 1635 AAGAACCCACAGTCATCTGCTGCAACCCCTTGTGGATTGTACTCTGACACTTGGAAGAAT 1694
|||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 2523 AAGAACCCACAGTCGTCCACTGCAACCTCTTGTGGATTGTACTCTGACACTCAGAAGAAT 2582
Query 1695 ACTCGAGAAAAAGGTTTGCCTCGGGACTGGTCGATACGGAAACCACTGGTCTCGCCCGCA 1754
|||||||||| || ||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct 2583 TCTCGAGAAAA-GGCTTGCCTCAGGACTGGACGATGCAGAAACCACTGGTCTCGCCCGCA 2641
Query 1755 GG 1756
||
Sbjct 2642 GG 2643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5