BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09220.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487723 jgi|Araly1|487723|fgenesh2_kg.6__857__AT5G09220.1 2724 0.0
Ahg496573 jgi|Araly1|496573|fgenesh2_kg.8__2389__AT5G63850.1 1275 0.0
Ahg476902 jgi|Araly1|476902|fgenesh2_kg.2__2032__AT1G77380.1 486 2e-136
> Ahg487723 jgi|Araly1|487723|fgenesh2_kg.6__857__AT5G09220.1
Length=1722
Score = 2724 bits (1475), Expect = 0.0
Identities = 1653/1737 (95%), Gaps = 19/1737 (1%)
Strand=Plus/Plus
Query 1 AAAATGCAGCAGCAAATACTATCATCACCCATCTCCTTAGTTCTATTTTATAATTCCTCT 60
||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 1 AAAATGCAGCAGCAAATACTATCATCACCCATCTCCTTAGTTCTA-TTT-T-GCTCTTCT 57
Query 61 TCTTTTTGTTCATAGCTTTGTAATTA-TAGTCTTATTTCTCTTTAAGGCTCAATAAGAGG 119
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 58 TCTTTTTGTTCATAGCTTTGTAA-TAGTAGTCTTATTTCTC-TTAAGGCTCAATAAGAGG 115
Query 120 AGATGGGTGAAACCGCTGCCGCCAATAACCACCGTCACCACCACCATCACGGCCACCAGG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 116 AGATGGGTGAAACCGCTGCCGCCAATAACCACCGTCACCACCACCATCACGGCCACCAAG 175
Query 180 TCTTTGACGTGGCCAGCCACGATTTCGTCCCTCCACAACCGGCTTTTAAATGCTTCGATG 239
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 176 TCTTTGACGTGGCCAGCCACGATGTCGTCCCTCCACAACCAGCTTTTAAATGCTTCGACG 235
Query 240 ATGATGGCCGCCTCAAAAGAACTGGGACTGTTTGGACCGCGAGCGCTCATATAATAACTG 299
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 236 ATGATGGCCGCCTCAAAAGAACCGGGACCGTTTGGACCGCGAGCGCTCATATAATAACTG 295
Query 300 CGGTTATCGGATCCGGCGTTTTGTCATTGGCGTGGGCGATTGCACAGCTCGGATGGATCG 359
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 296 CAGTGATCGGATCCGGCGTTTTGTCATTGGCGTGGGCAATTGCACAGCTCGGATGGATCG 355
Query 360 CTGGCCCTGCTGTGATGCTATTGTTCTCTCTTGTTACTCTTTACTCCTCCACACTTCTTA 419
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 CTGGCCCTGCGGTGATGCTATTGTTCTCTTTTGTTACTCTTTACTCCTCCACACTTCTTA 415
Query 420 GCGACTGCTACAGAACCGGCGATGCAGTGTCTGGCAAGAGAAACTACACTTACATGGATG 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GCGATTGCTACAGAACCGGCGATGCAGTGTCTGGCAAGAGAAACTACACTTACATGGATG 475
Query 480 CCGTTCGATCAATTCTCGGTGGGTTCAAGTTCAAGATTTGTGGGTTGATTCAATACTTGA 539
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 476 CCGTTCGATCAATTCTCGGTGGGTTCAAGTTCAAGATTTGTGGGCTAATTCAATACTTGA 535
Query 540 ATCTCTTTGGTATCGCAATTGGATACACGATAGCAGCTTCCATAAGCATGATGGCGATCA 599
|||||||||||||||| || |||||||| || ||||| || |||||||||||||||||||
Sbjct 536 ATCTCTTTGGTATCGCGATCGGATACACAATCGCAGCATCTATAAGCATGATGGCGATCA 595
Query 600 AGAGATCCAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCCAGTAATC 659
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 596 AGAGATCGAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCGAGCAATC 655
Query 660 CTTACATGATCGTATTTGGTGTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGATC 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTACATGATCGCATTTGGTGTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGATC 715
Query 720 AGATTTGGTGGATCTCCATTGTTGCAGCTGTTATGTCCTTCACTTACTCTGCCATTGGTC 779
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 716 AGATTTGGTGGATCTCTATTGTTGCAGCTGTAATGTCTTTCACTTACTCTGCCATTGGTC 775
Query 780 TAGCTCTTGGAATCGTTCAAGTTGCAGCGAATGGAGTTTTCAAAGGAAGTCTCACTGGAA 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 TAGCTCTTGGAATCGTTCAAGTTGCAGCAAATGGAGTTTTCAAAGGAAGTCTCACTGGAA 835
Query 840 TAAGCATCGGAACAGTGACTCAAACACAGAAGATATGGAGAACCTTCCAAGCACTTGGAG 899
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 836 TAAGCATCGGAACAGTGACTCAAACACAAAAAATATGGAGAACCTTCCAAGCACTTGGAG 895
Query 900 ACATTGCCTTTGCGTACTCATACTCTGTTGTCCTAATCGAGATTCAGGATACTGTAAGAT 959
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 ACATTGCCTTTGCTTACTCATACTCTGTTGTCCTAATCGAAATTCAGGATACTGTAAGAT 955
Query 960 CCCCACCGGCGGAATCGAAAACGATGAAGAAAGCAACAAAAATCAGTATTGCCGTCACAA 1019
||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 956 CCCCACCAGCGGAATCGAAAACGATGAAGAAAGCCACAAAAATCAGCATTGCTGTCACGA 1015
Query 1020 CTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGATGCAGCACCGG 1075
Query 1080 GAAACCTCCTCACCGGTTTTGGATTCTACAACCCGTTTTGGCTCCTTGACATAGCTAACG 1139
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 GAAACCTCCTCACGGGTTTTGGATTCTACAACCCGTTTTGGCTCCTTGACATAGCCAACG 1135
Query 1140 CCGCCATTGTTGTCCACCTCGTTGGAGCTTACCAAGTCTTTGCTCAGCCCATCTTTGCCT 1199
|||||||||| ||||||||| | ||||||||||||||||||||||| |||||||| ||||
Sbjct 1136 CCGCCATTGTCGTCCACCTCATCGGAGCTTACCAAGTCTTTGCTCAACCCATCTTCGCCT 1195
Query 1200 TTATTGAAAAATCAGTCGCAGAGAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTATTGAAAAATCAGTCGCAGAGAGATATCCAGACAATGACTTCCTCAGCAAGGAATTTG 1255
Query 1260 AAATCAGAATCCCCGGATTTAAGTCTCCTTACAAAGTAAACGTTTTCAGGATGGTTTACA 1319
|||||| ||||||||||||||||||||| ||||||| ||||||||||||| | ||||||
Sbjct 1256 AAATCAAAATCCCCGGATTTAAGTCTCCATACAAAGCAAACGTTTTCAGGGTAGTTTACC 1315
Query 1320 GGAGTGGCTTTGTCGTTACAACCACCGTGATATCGATGCTGATGCCGTTTTTTAACGACG 1379
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 1316 GGAGTGGCTTTGTCGTTACAACCACTGTGATATCAATGCTGATGCCGTTTTTCAACGATG 1375
Query 1380 TGGTCGGGATCTTAGGGGCGTTAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGGTCGGGATCTTAGGGGCGTTAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGA 1435
Query 1440 TGTATATTAAGCAGAGGAAGGTTGAGAAATGGAGCACGAGATGGGTGTGTTTACAGATGC 1499
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGTATATTAAGCAGAGGAAAGTTAAGAAATGGAGCACGAGATGGGTGTGTTTACAGATGC 1495
Query 1500 TTAGTGTTGCTTGTCTTGTGATCTCGGTGGTCGCCGGGGTTGGATCAATCGCCGGAGTGA 1559
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1496 TTAGTGTTGCTTGTCTTGTGATCTCGGTGGTCGCCGGAGTTGGATCAATCGCCGGAGTGA 1555
Query 1560 TGCTTGATCTTAAGGTCTATAAGCCATTCAAGTCTACATATTGATGATTATGGACCATGA 1619
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TGCTTGATCTTAAGGTCTACAAGCCATTCAAGTCTACATATTGATGATTATGGACCATGA 1615
Query 1620 --A-CAACAGAGAGAGTTGGTGTGTAAAGTTTACCATTTCAAAGAAAACTCCAAAAATGT 1676
| ||||||| | ||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1616 TGAACAACAGA-A-AGTTGGTGTGTAAAGTTTAGCATTTCAAAGAAAA----AAAA-TGT 1668
Query 1677 GTATATTGTATGTTGTTCTCATTTCGTATGGTCTCATCTTTGTAATAAAATTTAAAA 1733
|||||||||||||| ||| |||||||||||| ||||||||||||||| |||| |||
Sbjct 1669 GTATATTGTATGTT-TTC--ATTTCGTATGGTTTCATCTTTGTAATAAGATTTTAAA 1722
> Ahg496573 jgi|Araly1|496573|fgenesh2_kg.8__2389__AT5G63850.1
Length=1806
Score = 1275 bits (690), Expect = 0.0
Identities = 1169/1401 (83%), Gaps = 30/1401 (2%)
Strand=Plus/Plus
Query 211 TCCACAACCGGCTTTTAAATGCTTCGATGATGATGGCCGCCTCAAAAGAACTGGGACTGT 270
||||| || ||||| ||||| |||||||| |||||||| || ||| | | ||||| ||
Sbjct 273 TCCACGGCCAGCTTTCAAATGTTTCGATGACGATGGCCGGCTTAAACGTTCAGGGACGGT 332
Query 271 TTGGACCGCGAGCGCTCATATAATAACTGCGGTTATCGGATCCGGCGTTTTGTC-ATTGG 329
|||||||||||| || ||||| ||||| || || || || || || ||| | || || |
Sbjct 333 TTGGACCGCGAGTGCGCATATTATAACCGCTGTGATTGGTTCTGGTGTTCTATCGCTT-G 391
Query 330 CGTGGGCGATTGCACAGCTCGGATGGATCGCTGGCCCTGCTGTGATGCTATTGTTCTCTC 389
||||||| || | || ||||| |||||||| || ||| | |||||||| |||||||||
Sbjct 392 CGTGGGCAATAGGTCAACTCGGTTGGATCGCAGGTCCTACAGTGATGCTCTTGTTCTCTT 451
Query 390 TTGTTACTCT-TTACTCCTCCACACTTCTTAGCGACTGCTACAGAACCGGCGATGCAGTG 448
|||| ||| | ||||| || || |||||||||||||||||||||||||| ||| | ||
Sbjct 452 TTGTCACT-TACTACTCTTCGACTCTTCTTAGCGACTGCTACAGAACCGGAGATCCTGTC 510
Query 449 TCTGGCAAGAGAAACTACACTTACATGGATGCCGTTCGATCAATTCTCGGTGGGTTCAAG 508
||||| ||||||||||| ||||||||||| || || |||||||| |||||||| || | |
Sbjct 511 TCTGGGAAGAGAAACTATACTTACATGGACGCTGTCCGATCAATCCTCGGTGGCTTTAGG 570
Query 509 TTCAAGATTTGTGGGTTGATTCAATACTTGAATCTCTTTGGTATCGCAATTGGATACACG 568
||||||||||||||| ||||||| || |||||||||||||||||| | | || |||||
Sbjct 571 TTCAAGATTTGTGGGCTGATTCAGTATTTGAATCTCTTTGGTATCACGGTCGGGTACACA 630
Query 569 ATAGCAGCTTCCATAAGCATGATGGCGATCAAGAGATCCAACTGCTTCCACAAGAGTGGA 628
|| ||||| || ||||| ||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 631 ATCGCAGCATCTATAAGTATGATGGCGATCAAGAGGTCCAACTGTTTCCATGAGAGCGGA 690
Query 629 -GGAAAAGACCCATGTCACATGTCCAGTAATCCTTACATGATCGTATTTGGTGTGGCAGA 687
|||||| |||| ||||||||||| || ||||| ||||||||| | ||||||||| | ||
Sbjct 691 GGGAAAA-ACCCGTGTCACATGTCGAGCAATCCATACATGATCATGTTTGGTGTGACCGA 749
Query 688 GATCTTGCTCTCTCAGGTTC-CTGATTTCGATCAGATTTGGTGGATCTCCATTGTTGCAG 746
||||||||||||||| | || ||||| || |||||||||||| |||||||||| || |
Sbjct 750 GATCTTGCTCTCTCA-GATCAAAGATTTTGACCAGATTTGGTGGCTCTCCATTGTCGCTG 808
Query 747 CTGTTATGTCCTTCACTTACTCTGCCATTGGTCTAGCTCTTGGAATCGTTCAAGTTGCAG 806
|| | ||||||||||| |||||||| || ||| ||||||| |||||| ||||||| || |
Sbjct 809 CTATCATGTCCTTCACATACTCTGCAATCGGTTTAGCTCTCGGAATCATTCAAGTCGCTG 868
Query 807 CGAATGGAGTTTTCAAAGGAAGTCTCACTGGAATAAGCATCGGAACAGTGACTCAAACAC 866
| ||||| ||| |||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct 869 CCAATGGGGTTGTCAAGGGAAGTCTCACCGGAATTAGCATCGGGGCAGTGACTCAGACCC 928
Query 867 AGAAGATATGGAGAACCTTCCAAGCACTTGGAGACATTGCCTTTGCGTACTCATACTCTG 926
| |||||||||||||| || |||||||||||||||||||||||||| || ||||||||||
Sbjct 929 AAAAGATATGGAGAACATTTCAAGCACTTGGAGACATTGCCTTTGCTTATTCATACTCTG 988
Query 927 TTGTCCTAATCGAGATTCAGGATACTGTAAGATCCCCACCGGCGGAATCGAAAACGATGA 986
|||| || ||||| |||||||| ||||||| ||| ||||| || ||||| ||||||||||
Sbjct 989 TTGTTCTTATCGAAATTCAGGACACTGTAAAATCTCCACCAGCAGAATCAAAAACGATGA 1048
Query 987 AGAAAGCAACAAAAATCAGTATTGCCGTCACAACTATC-TTCTACATGCTATGTGGCTCA 1045
||| || |||| |||||| || ||||| ||||| | | || ||| |||||||||| |
Sbjct 1049 AGATCGCCACAAGAATCAGCATCGCCGTTACAACGA-CATTTTACCTGCTATGTGGTTGT 1107
Query 1046 ATGGGTTATGCCGCTTTTGGAGATGCAGCACCGGGAAACCTCCTCACCGGTTTTGGATTC 1105
||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 1108 ATGGGCTATGCCGCCTTTGGAGATGCAGCACCGGGAAACCTCTTAACCGGTTTTGGTTTC 1167
Query 1106 TACAACCCGTTTTGGCTCCTTGACATAGCTAACGCCGCCATTGTTGTCCACCTCGTTGGA 1165
||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 1168 TACAATCCGTTTTGGCTCCTTGACGTGGCTAACGCTGCCATTGTTGTCCACCTCGTAGGA 1227
Query 1166 GCTTACCAAGTCTTTGCTCAGCCCATCTTTGCCTTTATTGAAAAATCA-G-TCGCAGAGA 1223
||||||||||||||||||||||||||||| ||||||||||||||| || | | || | |
Sbjct 1228 GCTTACCAAGTCTTTGCTCAGCCCATCTTCGCCTTTATTGAAAAA-CAAGCT-GCCGCTA 1285
Query 1224 GATATCCAGACAATGACTTCCTCAGCAAGGAATTTGAAATCAGAATCCCCGG-ATTTAAG 1282
| | ||| |||| |||||| ||| |||||||| |||||| ||||||| || ||| | |
Sbjct 1286 GGTTTCCTGACAGTGACTTGGTCACCAAGGAATACGAAATCCGAATCCCTGGTATT-AGG 1344
Query 1283 TCTCCTTACAAAGTAAACGTTTTCAG-G-ATGGTTTACAGGAGTGGCTTTGTCGTTACAA 1340
|| ||||||||||| ||||||||||| | | | ||||| |||| || ||||| ||| |
Sbjct 1345 TCACCTTACAAAGTCAACGTTTTCAGAGCA-G-TTTACCGGAGCGGGTTTGTGGTTTTGA 1402
Query 1341 CCACCGTGATATCGATGCTGATGCCGTTTTTTAACGACGTGGTCGGGATCTTAGGGGCGT 1400
|||| |||||||||||||| ||||||||||| |||||||| || ||||| ||||| ||||
Sbjct 1403 CCACTGTGATATCGATGCTTATGCCGTTTTTCAACGACGTCGTGGGGATTTTAGGTGCGT 1462
Query 1401 TAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAG-CAGAGGAAG 1459
||||||||||||| ||||||||||| |||||||| ||||||||||| ||| |||||||||
Sbjct 1463 TAGGGTTTTGGCCATTGACGGTTTACTTTCCGGTTGAGATGTATAT-AAGACAGAGGAAG 1521
Query 1460 GTTGAGAAATGGAGCACGA-GATGGGTGTGTTTACAGATGCTT-AG-TGTTGCTTGTCTT 1516
||||||| |||||| | || | ||||| ||| | |||||| || || ||| | |||| ||
Sbjct 1522 GTTGAGAGATGGAGTATGAAG-TGGGTTTGTCTGCAGATG-TTGAGCTGTGG-TTGT-TT 1577
Query 1517 G-TGATCTCGGTGGTCGCCGGGGTTGGATCAATCGCCGGAGTGATGCTTGATCTTAAGGT 1575
| ||||| | |||| ||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 1578 GATGATCACATTGGTTGCCGGAGTTGGCTCCATCGCCGGAGTAATGCTTGACCTTAAGGT 1637
Query 1576 CTATAAGCCATTCAAGTCTAC 1596
|| ||||| |||||| ||||
Sbjct 1638 TTACAAGCCGTTCAAGACTAC 1658
> Ahg476902 jgi|Araly1|476902|fgenesh2_kg.2__2032__AT1G77380.1
Length=1825
Score = 486 bits (263), Expect = 2e-136
Identities = 954/1277 (75%), Gaps = 89/1277 (7%)
Strand=Plus/Plus
Query 252 TCAAAAGAACTGGGACTGTTTGGACCGCGAGCGCTCATATAATAACTGCGGTTATCGGAT 311
||||||||||||||| ||||||||| ||||| || || |||||||| ||||| || || |
Sbjct 197 TCAAAAGAACTGGGAGTGTTTGGACGGCGAGTGCACACATAATAACGGCGGTGATAGGTT 256
Query 312 CCGGCGTTTTGTCATTGGCGTGGGCGATTGCACAGCTCGGATGGATCGCTGGCCCTGCT- 370
| || ||||||||| |||||||||| | || ||||| || ||| | || || || | |
Sbjct 257 CGGGAGTTTTGTCACTGGCGTGGGCTACGGCGCAGCTAGGTTGGCTAGCCGGACCAG-TG 315
Query 371 GTGATGCTATTGTTCTCT-CTTGTTAC-TCTTTACTCCTCCACACTTCTTAGCGAC-TGC 427
|||||| | | |||||| | || || | ||| | | || | |||||| ||| | ||
Sbjct 316 GTGATGTTGCTCTTCTCTGC-AGTCACTTATTT-CACTTCTTCTCTTCTT-GCGGCATGT 372
Query 428 TACAGAACCGGCGATGC-AGTGTCTGGCAAGAGAAACTACACTTACATGGATGCCGTTCG 486
||| | | ||| | | | | || |||||||| ||||||||||| |||||||| || ||
Sbjct 373 TACCGCTCTGGCAACCCTA-TCTCCGGCAAGAGGAACTACACTTATATGGATGCTGTCCG 431
Query 487 ATC-AATTCTCGGTGG-GTTCAAGTTCAAGATTTGTGGG-TTGATTCAATA-CTTGAATC 542
||| || ||||||||| | | ||| | | | | |||||| ||| |||| || ||| |||
Sbjct 432 ATCTAA-TCTCGGTGGCG-TGAAGGTGACGCTATGTGGGATTG-TTCAGTATCTT-AATA 487
Query 543 TCTTTGGTATCGCAATTGGATACACGATAGCAGCTTCCATAAGCATGATGGCGATCAAGA 602
|||||||| | ||||| || ||||| || || | | |||||||||||||| || ||||
Sbjct 488 TCTTTGGTGTTGCAATAGGCTACACAATTGCTTCAGCTATAAGCATGATGGCAATAAAGA 547
Query 603 GATCCAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCCAGTAATCCTT 662
|||| ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 548 GATCAAACTGTTTCCACAAGAGTGGAGGGAAAGATCCATGTCACATGAACAGTAATCCTT 607
Query 663 ACATGATCG-TATTTGG--T-GTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGAT 718
||||||| | | ||||| | || |||| || | |||||||| |||| ||||| |||
Sbjct 608 ACATGATAGCT-TTTGGATTAGT-CCAGA-TTC-TATTCTCTCAGATTCCAGATTTTGAT 663
Query 719 CAGA-TTTGGTGGATCTCCATTGTTGCAGCTGTTATGTCCTTCACTTA---CTCTGCCAT 774
|| | |||||||| |||| || | || || || |||||||||||||| |||||||
Sbjct 664 CA-ACTTTGGTGGCTCTCAATCCTCGCCGCCGTAATGTCCTTCACTTATTCCTCTGCC-- 720
Query 775 TGGTCTAGCTCTTGGAATCGTTCAAGTTGCAGCGAAT-GG-AGTTTTCAAAGGAAGTCTC 832
||||| || || || || | ||||||| | ||| || || | || |||||||||
Sbjct 721 -GGTCTCGCCCTAGGCATAGCCCAAGTTGTTGTAAATGGGAAG--GTGAAGGGAAGTCTC 777
Query 833 ACTGGAATAAGCATCGGAACAGTGACTCAAACACAGAAGATATGGAGAACCTTCCAAGCA 892
||||| || ||||| ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 778 ACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGGAGAACCTTCCAAGCT 837
Query 893 CTTGGAGACATTGCCTTTGCGTACTCATACTCTGTTGTCCTAATCGAGATTCAGGATACT 952
|||||||||||||| ||||| ||||| ||||| | | || |||||||||||||| ||
Sbjct 838 CTTGGAGACATTGCTTTTGCTTACTCTTACTCCATCATTCTCATCGAGATTCAGGACACA 897
Query 953 GT-AAGATCCCCACCGGCGGAATCGAAAACGATGAAGAAAGC-AACAAAAATCAGTATT- 1009
|| ||| || ||||| | ||| |||||||||||||| || |||| | || |
Sbjct 898 GTGAAG-TCACCACCATCAGAAGAAAAAACGATGAAGAA-GCCAACACTTGTGAGCGTCA 955
Query 1010 GCCGTCACAACTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGAT 1069
| || || ||||| ||||||||| | ||||| | ||||||||||| || ||||||||
Sbjct 956 GT-GTAACGACTATGTTCTACATGTTGTGTGGATGTATGGGTTATGCAGCCTTTGGAGAC 1014
Query 1070 GC-AGCACCGGGAAACCTCCTCACCGGTTTTGGATTCTACAACCCGTT-TTGGCTCCTTG 1127
| | | |||||||| ||| | ||||||||||| || || || || || |||||| ||||
Sbjct 1015 -CTATCTCCGGGAAATCTCTTAACCGGTTTTGGGTTTTATAATCC-TTATTGGCTTCTTG 1072
Query 1128 ACATAGCTAACGCCGCCATTGTTG-TCCACCTCGTTGGAGCTTACCAAGTCT-TTGCTCA 1185
|||| || || || |||||||| | | ||||| |||| || |||||||||| |||| ||
Sbjct 1073 ACATTGCAAATGCAGCCATTGT-GATTCACCTTATTGGTGCATACCAAGTCTATTGC-CA 1130
Query 1186 GCC-CATCTTTGCCTTT-ATTGAAAAATCA-G-T-CGCAGAGAGATATCCA-GACAATGA 1239
|| | | ||||| ||| || || || || | | | || ||| ||| || | |||
Sbjct 1131 ACCTC-TGTTTGC-TTTCATCGAGAAG-CAAGCTTC-CATTC-GAT-TCCCTGATAGTGA 1184
Query 1240 CTTCCTCAGCAAG-GAATTTGAAA-T-CAGAATCCCCGGATTT-AAG--TCTCCTTACAA 1293
||| | ||||| || | | ||| | | ||| || || ||| ||| ||||| ||
Sbjct 1185 GTTCATT-GCAAGAGA-TATCAAAATTCC-AATTCCAGG-TTTCAAGCATCTCC--ACTT 1238
Query 1294 AGTAAACGTTTTCAGGATGGTTTACAGGA--GTGGCTTTGTCGTT-ACAACCACCGTGAT 1350
| || || |||||| || | | ||| ||| ||||| | | | ||| || || ||
Sbjct 1239 -G-AAT-GTCTTCAGGTTGATATGGGGGACAGTG--TTTGT-GATCATAACGACAGTTAT 1292
Query 1351 ATCGATGCTGATGCCGTTTTTTAACGACGTGGTCGGGATCT--TAGGGGCGTTAGGGTTT 1408
|| ||||| | |||||||| |||||||| || ||| ||| | ||||| | ||||||
Sbjct 1293 CTCAATGCTTCTTCCGTTTTTCAACGACGTTGT-GGG-TCTGCTCGGGGCACTCGGGTTT 1350
Query 1409 TGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAGCAGAGGAAGGTTGAGAAA 1468
||||| ||||| || |||||||| ||||| ||||| ||| ||||| |||| | | |
Sbjct 1351 TGGCCATTGACAGTGTATTTTCCAGTGGAAATGTACATTGCGCAGAAGAAGATACCTAGA 1410
Query 1469 TGGAGCACGAGATGGGT 1485
|||||||| ||||||||
Sbjct 1411 TGGAGCACCAGATGGGT 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5