BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09225.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940380 jgi|Araly1|940380|scaffold_600924.1 355 2e-97
> Ahg940380 jgi|Araly1|940380|scaffold_600924.1
Length=257
Score = 355 bits (192), Expect = 2e-97
Identities = 237/257 (92%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 131 GATTCTTGACTTGGAACAAATATGCCTCACAGAACAAGGCCGTTGAAGGGACTCTTGCTT 190
||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GATTCTTGAGTTGGAATTAAGATGCCTCACAGAACAAGGCCATTGAAGGGACTCTTGCTT 60
Query 191 TTCACTGGAATAAACTTTGTGTTGGTGCAGACCATTACTCCAGTCTATGACTTTGTCTGC 250
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TTCACTGGAATAAACTTTGTGTTGGTGCAGACCATTACTCCTGTCTATGACTTTGTCTGC 120
Query 251 TTCTTGCCTTACTGGGAGAGAAGGAGAGAGCGAATCCGGCAGGAGCGTGAAGCCGCAGCT 310
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 121 TTCTTGCCTTACTGGGAGAGAAGGAGAGAGCGAATCCGGCAGGAGCGTGAAGCGGTGGCT 180
Query 311 GCATCCTTA-A-A-CTCAA-C--A-CA-A-AAAGCTACTCAAGCATCTGTTGGATGATGA 361
||||||||| | | | ||| | | || | ||||||||||||||||||||||||||||||
Sbjct 181 GCATCCTTACACAGCACAAACTCAACACAGAAAGCTACTCAAGCATCTGTTGGATGATGA 240
Query 362 ACTCTTCTCTACATCTT 378
||||| |||||||||||
Sbjct 241 ACTCTCCTCTACATCTT 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5