BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09230.7
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350148 jgi|Araly1|350148|fgenesh1_pg.C_scaffold_6000741 1679 0.0
> Ahg350148 jgi|Araly1|350148|fgenesh1_pg.C_scaffold_6000741
Length=1071
Score = 1679 bits (909), Expect = 0.0
Identities = 1021/1074 (95%), Gaps = 12/1074 (1%)
Strand=Plus/Plus
Query 152 ATGTACCGGCCGCTGCAGTCTGGGGGAAACTTGGTTATGTTGTTTAAAGGATGCAGACGG 211
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGTACCGGCCGCTGCAATCTGGGGGAAATTTAGTTATGTTGTTTAAAGGATGCAGACGG 60
Query 212 TTTGTGAGAACAACGTGTCGCGTTTCGATCCCTGGTGGTTCTTTGGGGAATGAATCAAAA 271
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 61 TTTGTGAGAACAACGTGTCGCGTTTCGATCCCTGGTGGTTCTTTGGGAAATGAATCAGAA 120
Query 272 GCACCTCCAAGGTTTCTGAGGGATAGAAAGATTGTTCCAGATGCTGATCCCCCCAATATG 331
||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct 121 GCACCTCCAAGGTTTCTGAGGGATAAAAAGATAGTTCCAGATGCTGATCCTCCCAATATG 180
Query 332 GAAGATATCCACAAGTTGTATCGACTTTTTGAGCAAAGCTCGAGACTCACCATCTTGACT 391
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAAGATATTAATAAGTTGTATCGACTTTTTGAGCAAAGTTCGAGACTCACCATCTTGACT 240
Query 392 GGAGCTGGGGTTAGCACAGAATGTGGAATTCCGGATTACAGAAGTCCCAATGGAGCATAC 451
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 GGAGCTGGGATTAGCACAGAATGTGGAATTCCGGATTATAGAAGTCCCAATGGAGCTTAC 300
Query 452 AGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTACTCGATCAAGCCGAGCTCGTAGG 511
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 301 AGTTCTGGTTTCAAACCAATTACCCATCAGGAATTCACTCGATCGAGCCGAGCTCGTAGG 360
Query 512 CGGTATTGGGCGAGGAGTTACGCTGGATGGAGGA-GGTTCACTGCAGCACAACCAGGACC 570
||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 361 CGGTATTGGGCAAGGAGTTACGCTGGATGGAG-ACGGTTCACTGCAGCACAACCTGGACC 419
Query 571 AGCT-CATACTGCTTTAGCATCACTAGAAAAAGCTGGACGAATAAATTTTATGATCACAC 629
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AG-TGCATACTGCTTTAGCATCACTAGAAAAAGCTGGACGAATAAATTTTATGATCACAC 478
Query 630 AAAATGTTGACAGGTTGCATCATCGTGCTGGGAGCGATCCACTTGAATTACATGGCACAG 689
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGAACGTTGACAGGCTGCATCATCGTGCTGGGAGCGATCCACTTGAATTACATGGCACAG 538
Query 690 TATATACTGTTATGTGCTTAGAGTGCGGCTTCTCTTTTCCCCGAGACTTGTTTCAGGATC 749
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 TATATACTGTTATGTGCTTAGATTGCGGCTTCTCTTTTCCCCGAGACTTGTTTCAGGATC 598
Query 750 AGCTAAAAGCAATCAATCCTAAG-----T-GGGCTGAAGCTATAGAAAGTATTGATCATG 803
|||||||||| |||||||||||| | |||| ||||| ||||||||||| |||||||
Sbjct 599 AGCTAAAAGCTATCAATCCTAAGGCCAGTTGGGCAGAAGCAATAGAAAGTATCGATCATG 658
Query 804 GAGATCCAGGATCAGAGAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATCGAGA 863
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 GAGATCCAGGGTCAGAGAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATTGAGA 718
Query 864 TTGACGAAAAGTTTTGGGAAGAGGGTTTTCATATACCAGTATGTGAGAAGTGCAAAGGAG 923
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 719 TTGACGAAAAGTTTTGGGAAGAAGGTTTTCATATACCTGTATGTGAGAAGTGCAAAGGAG 778
Query 924 TCCTAAAGCCTGATGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAG 983
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCTAAAGCCGGATGTAATTTTCTTTGGAGACAACATCCCGAAGGAAAGAGCTACTCAAG 838
Query 984 CAATGGAAGTTGCAAAACAGAGCGATGCATTCCTCGTGTTGGGTTCATCCTTAATGACAA 1043
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 CAATGGAAATTGCAAAACAGAGCGATGCATTTCTCGTGTTGGGTTCATCCTTAATGACAA 898
Query 1044 TGTCTGCTTTTCGCCTT-TGCAGAGCGGCTCATGAGGCTGGTGCTATGACCGCAATTGTA 1102
|||| |||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 899 TGTCCGCTTTTCGCCTTGT-CAGAGCGGCTCATGAGGCTGGTGCTATGACTGCAATTGTA 957
Query 1103 AATATAGGCGAAACAAGAGCTGATGACATTGTTCCATTGAAAATCAATGCTAGGGTTGGT 1162
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 958 AATATAGGCGAAACAAGAGCTGATGACCTTGTTCCATTGAAAATCAATGCTAGAGTTGGT 1017
Query 1163 GAGATATTGCACAGAGTTCTTGACGTGGGATCGCTCAGTGTCCCAGCTCTCTAG 1216
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1018 GAGATATTGCACAGAGTTCTTGACGTGGGGTCGCTCAGTGTCCCAGCTCACTAG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5