BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09240.2

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487733 jgi|Araly1|487733|fgenesh2_kg.6__867__AT5G09240.1          518    3e-146


> Ahg487733 jgi|Araly1|487733|fgenesh2_kg.6__867__AT5G09240.1
Length=590

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 320/339 (94%), Gaps = 4/339 (1%)
 Strand=Plus/Plus

Query  1    TTATTTAACTTGAGAATCTCAAGAGTCAATTTTTGCAGTAGAAGAGTG-tttt-ttttAG  58
            ||||||  |||||||||||||||| || |||||||||||||||||||| |||| ||||| 
Sbjct  1    TTATTTTCCTTGAGAATCTCAAGAATCGATTTTTGCAGTAGAAGAGTGCTTTTCTTTTAC  60

Query  59   AGGTTAAGAAAATGTCTGAGAACGGAAAAAGGAAAGACGAGGATGTCAGAGCATCAGACG  118
             |||| |||||||||||  ||  ||||||||||||| |||||| ||||||||||||||| 
Sbjct  61   TGGTTGAGAAAATGTCTTCGAGTGGAAAAAGGAAAGGCGAGGAAGTCAGAGCATCAGAC-  119

Query  119  ACCG-CGACGAATCTGAGACCCACGCGCCGCCTAAGAAAGTGGCAAAGCCAGCGGACGAG  177
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  AACGACGACGAATCTGAGACCCACGCGCCGCCTAAGAAAGTGGCAAAGCCAGCGGACGAG  179

Query  178  ATTGAGGACATCTTCATCTGCAATTTAGATAAGAATCGGAGAGTCTTTGTGAGGAATTGC  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  ATTGAGGACATCTTCATCTGCAATTTAGATAAGAATCGGAGAGTCTTTGTGAGGAATTGC  239

Query  238  AATGGGAGGATTTGGATTGCCATTCGTCAGTTCTTTGTCAAGGACGGTATAACTTTACCT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  AATGGGAGGATTTGGATTGCCATTCGTCAGTTCTTTGTCAAGGACGGTATAACTTTACCT  299

Query  298  TGTAATAGCAAGCAAGGTATCTCTCTAAGCCTGGAACAG  336
            |||||||||||||| ||||||||||||||||||||||||
Sbjct  300  TGTAATAGCAAGCACGGTATCTCTCTAAGCCTGGAACAG  338


 Score =  316 bits (171),  Expect = 1e-85
 Identities = 230/256 (90%), Gaps = 14/256 (5%)
 Strand=Plus/Plus

Query  418  CAGTGGAACGATCTTCGGAACCATGAGGAGGATATCGATAAGGCCCTCTCTGAGCTTTCT  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  336  CAGTGGAACGATCTTCGGAACCATGAGGAGGATATCGATAAGGCCCTCTCTGACCTTTCT  395

Query  478  GAGGTTTAAAAGCTTGTGTAATC-GG--GT-A---T--TGGAAG--GTGGCTTTGGTTGT  526
            ||||||||||||||||| ||||| ||  || |   |  ||||||   |||||| ||||||
Sbjct  396  GAGGTTTAAAAGCTTGTATAATCGGGTAGTAAGTCTAATGGAAGATATGGCTTAGGTTGT  455

Query  527  TTTGGTTTGTTTTTCAGAACAACACCATGTTCTGCAAGTGTTAGCTGCTTCGAGTTAGTT  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  456  TTTGGTTTGTTTTTCAGAACAACACCATGTTCTGCAAGTGTTAGCTGCTTCAAGTTAGT-  514

Query  587  C-ATGTGTTGAATCTATTATTTGAT-GTTGATTACTCTTTTATTTGATGTTGGATTTACA  644
            | |||| | |||||||| ||||| | |||||||||||||||||||| | ||| |||||||
Sbjct  515  CGATGTATCGAATCTATGATTTGGTTGTTGATTACTCTTTTATTTGTTTTTGAATTTACA  574

Query  645  ACTTGAGATACGTTGC  660
            ||||||||||||||||
Sbjct  575  ACTTGAGATACGTTGC  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26457304398


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5