BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09250.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892834 jgi|Araly1|892834|Al_scaffold_0006_830                     527    4e-149
  Ahg940383 jgi|Araly1|940383|scaffold_600927.1                        100    1e-20 


> Ahg892834 jgi|Araly1|892834|Al_scaffold_0006_830
Length=324

 Score =  527 bits (285),  Expect = 4e-149
 Identities = 311/324 (96%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  106  ATGTCTTCTAGAGGAAAAAGGAAAGACGAAGATGTCAGAGCATCAGATGACGAATCTGAA  165
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTTCGAGAGGAAAAAGGAAAGACGACGATGTCAGAGCATCAGATGACGAATCTGAA  60

Query  166  ACCCACGCGCCGGCTAAGAAAGTCGCAAAGCCAGCAGACGATTCCGACCAGTCTGACGAT  225
             ||||||||||||||||||||||||||||||||||||||   |||||| |||||||||| 
Sbjct  61   TCCCACGCGCCGGCTAAGAAAGTCGCAAAGCCAGCAGACTCCTCCGACGAGTCTGACGAC  120

Query  226  ATCGTCGTCTGCAACATATCTAAGAATAGGAGAGTCTCTGTAAGGAATTGGAACGGGAAG  285
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  121  ATCGTCGTCTGCAACATATCGAAGAATAGGAGAGTCTCTGTGAGGAATTGGAACGGGAAG  180

Query  286  ATTTGGATTGACATTCGTGAGTTCTATGTCAAGGACGGAAAGACTTTGCCTGGCAAGAAA  345
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTGGATTGACATTCGTGAGTTTTATGTCAAGGACGGAAAGACTTTGCCTGGCAAGAAA  240

Query  346  GGTATCTCTCTAAGCGTGGATCAGTGGAACACTCTTCGGAACCACGCAGAGGATATCGAG  405
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGCATTTCTCTAAGCGTGGATCAGTGGAACACTCTTCGGAACCACGCAGAGGATATCGAG  300

Query  406  AAGGCCCTCTCTGACCTTTCTTAG  429
            ||||||||||||||||||||||||
Sbjct  301  AAGGCCCTCTCTGACCTTTCTTAG  324


> Ahg940383 jgi|Araly1|940383|scaffold_600927.1
Length=295

 Score =  100 bits (54),  Expect = 1e-20
 Identities = 73/81 (90%), Gaps = 5/81 (6%)
 Strand=Plus/Minus

Query  538  TAGTTGGTGTATGGAATCTTTCACTTTTGGTTCAGACAAGCTTTGGTTGGTATTAAGAAT  597
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TAGTTGGTGTATCGAACCTTTCACTTTTGGTTCAGACAAGCTTTGGTTGGTATTAAGAAT  236

Query  598  ATAATGATTGCTCTTTTATTT  618
                 | ||||||||||||||
Sbjct  235  G----G-TTGCTCTTTTATTT  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5