BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09260.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700 1088 0.0
Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1 675 0.0
Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1 372 3e-102
Ahg921570 jgi|Araly1|921570|scaffold_102851.1 303 1e-81
> Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700
Length=654
Score = 1088 bits (589), Expect = 0.0
Identities = 633/654 (97%), Gaps = 3/654 (0%)
Strand=Plus/Plus
Query 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAATTTGTTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTTTCT 60
Query 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 120
Query 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 180
Query 225 GCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 284
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 240
Query 285 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTGAG 344
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAGCAGTCTTTGAG 300
Query 345 AGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATGAT 404
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGATGAT 360
Query 405 GTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTGCC 464
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 GTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGATGAACTGAGTGCC 420
Query 465 ATATTAGGTGAGAAACTATCAGCGGAAGATGAAGAAGAGATCTTAGCAGAATTCGACAAC 524
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 421 ATATTAGGTGAGAAACTATCAGCAGAAGATGAAGAAGATATCTTAGCAGAATTCGACAAC 480
Query 525 CTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTCATGCCT 584
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CTAGAAAGTCAGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTTGTGCCT 540
Query 585 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 600
Query 645 G-A-AAC-CACTTCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 695
| | || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGAAATCACTCCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 654
> Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1
Length=859
Score = 675 bits (365), Expect = 0.0
Identities = 528/606 (87%), Gaps = 14/606 (2%)
Strand=Plus/Plus
Query 44 GATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCT 102
|||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 68 GATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCT 126
Query 103 CTCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTG 162
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 127 CTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTG 186
Query 163 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 222
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 187 AAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGT 246
Query 223 TAGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 282
||||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| |||
Sbjct 247 TAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCA 306
Query 283 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTG 342
||||||| ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||
Sbjct 307 TCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAACAAAAGGCTGTGTTTG 366
Query 343 AGAGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATG 402
||||||||||||| ||||| | ||| |||||||| ||||| |||||| | |||||||||
Sbjct 367 AGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAGTTGGACCTTGATG 426
Query 403 ATGTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTG 462
||||||||||||| |||||||| ||||| || || || |||||||| ||||| |||| ||
Sbjct 427 ATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTATCAAGATGAGCTGAATG 486
Query 463 CCATAT-TAGGTGAGAAACTATCAGCGGAAGATGAAGAAGA-GATCTTAGCAGAATTCGA 520
| || | | || ||||| |||||||| || ||||||||||| | | ||||||||||| ||
Sbjct 487 CTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATG-TATTAGCAGAATTTGA 544
Query 521 CAACCTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAG-AGCTCA 579
|||||||||||||| ||| |||||||| || |||||| |||||||||||| || || ||
Sbjct 545 CAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGA-AGGAG-TC- 601
Query 580 TGCCTGAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTT 639
| |||||| | || || ||||||| || ||||||||||||||| | || |||||||
Sbjct 602 --C--GAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGCTT 657
Query 640 CCAATG 645
||||||
Sbjct 658 CCAATG 663
> Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1
Length=255
Score = 372 bits (201), Expect = 3e-102
Identities = 238/256 (93%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 45 ATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCTC 103
||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC 59
Query 104 TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGA 163
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 60 TCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGA 119
Query 164 AGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTT 223
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 120 AGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGTT 179
Query 224 AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCAT 283
|||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 180 AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCAT 239
Query 284 CAATGTCGAACAACAA 299
|||||| |||||||||
Sbjct 240 CAATGTTGAACAACAA 255
> Ahg921570 jgi|Araly1|921570|scaffold_102851.1
Length=313
Score = 303 bits (164), Expect = 1e-81
Identities = 201/219 (92%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104
||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 21 ATGGGAAATTTGTTCCTGAAGAAACCTCAGATCACGGAGGTTGATCGAGTGATTCTCTCT 80
Query 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 81 CTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGAA 140
Query 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTT-GTT 223
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 141 GCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGA-CTTTTGTT 199
Query 224 AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAA 262
|||||||| ||| ||||| || ||||||||||| |||||
Sbjct 200 AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAA 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5