BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09270.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487736 jgi|Araly1|487736|fgenesh2_kg.6__870__AT5G09270.1 1011 0.0
Ahg487738 jgi|Araly1|487738|fgenesh2_kg.6__872__AT5G09280.1 52.8 3e-06
> Ahg487736 jgi|Araly1|487736|fgenesh2_kg.6__870__AT5G09270.1
Length=661
Score = 1011 bits (547), Expect = 0.0
Identities = 625/663 (94%), Gaps = 4/663 (1%)
Strand=Plus/Plus
Query 14 TTTTGCAAAGCTTTATAGGGTTTAAGAACTATGGCTCTCTGAGCTTCATTTGGAAATCTT 73
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTTTGCAAAGCTTTATAGGGTTTAAGAGCTATGGCTCTCTGAGCTTCATTTGGAAATCTT 60
Query 74 CATTGTTCTTCGACGACTTTGTTTGACTCCAGGCTTAGTCAGAAGCTGATTTGGGATTTG 133
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CATTGTTCTTAGACGACTTTGTTTGACTCCAGGCTTAGTCAGGAGCTGATTTGGGATTTG 120
Query 134 AGATGGCGACAGAGCATAGCGGTTTAGAAGATCAGGAGAGCCAACCAAGCCAAGTGGCTC 193
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 121 AGATGGCGACAGAGCAGAGCGGATTAGAAGATCAGGAGAGCCAACCAAACCAAGTGGCTC 180
Query 194 CTGGTTTTGTAGGAGCAATTGAAGAACAATACAAAAAACTCAGAGATCACGCTGAAGCTT 253
|||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 181 CTGGTTTTGTAGGAGCAATTGAAGAACAATACAAGAAACTCAAAGATCACGCCGAAGCTT 240
Query 254 ATCCATATGTTTGGGGTTCTTATACTGTTGTCTATGGTGGTCTTTTCCTTTGGACAGCTT 313
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 241 ATCCATATGTTTGGGGTTCTTATACTGTTGTCTACGGCGGTCTATTCCTTTGGACAGCTT 300
Query 314 ATAGATGGAGGAAACTTAGGAGAACTGAAGATCGAGTTCGTGGTCTTCAGACAAAACTTC 373
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 301 ATAGATGGAGGAAACTTAGGAGAACCGAGGATCGAGTTCGTGGTCTTCAGACAAAACTTC 360
Query 374 GGAAACTCGTCGAAAATGAACAAGCAGCAGTAACAGCTTCTAAATCTGCTCAATCAGTGG 433
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 361 GGAAACTCGTTGAAGATGAACAAGCAGCAGTAACAGCTTCTAAATCTGCTCAGTCAATGG 420
Query 434 ACAAGTCTTCTTCAAT-TCCCGACAAGAAAACGTCTTAATTAGTAAGTTACAATCAGAAC 492
|||||||||||||||| || ||||||||||||||||||||||| | ||||| ||| ||
Sbjct 421 ACAAGTCTTCTTCAATATCT-GACAAGAAAACGTCTTAATTAGTGATTTACATTCAAAAA 479
Query 493 CATTGTCTCTGTTAGACTTTTGACGAGGTTAGTTTCTTACAACGGAATCAATATTCCCGG 552
|||||||| ||||||||||||||| ||||||||||| | |||| ||||||||||||||||
Sbjct 480 CATTGTCTTTGTTAGACTTTTGACAAGGTTAGTTTCATCCAACCGAATCAATATTCCCGG 539
Query 553 GGTTTATCTGTTTCGTCACAGTATTTGTGTTCTTTATCAGCATAAAATTCATGTACATGA 612
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 540 GGTTTATCTGTTTTGTCACAGTACTTGTGTTCTTTATCCGCATAAAATTCATGTACATGA 599
Query 613 ATGAAGAAGAGAAAA-CGCTTATTCGTTGAAACGCTAAAAAGTCATGTTAAGCGTTGTTG 671
|||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 ATGAAGAAGAGAAATTC-CTTATTTGTTGAAACGCTAAAAAGTCATGTTAAGCGTTGTTG 658
Query 672 TTC 674
|||
Sbjct 659 TTC 661
> Ahg487738 jgi|Araly1|487738|fgenesh2_kg.6__872__AT5G09280.1
Length=897
Score = 52.8 bits (28), Expect = 3e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 646 CTAAAAAGTCATGTTAAGCGTTGTTGTT 673
||||||||||||||||||||||||||||
Sbjct 897 CTAAAAAGTCATGTTAAGCGTTGTTGTT 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5