BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09280.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487738 jgi|Araly1|487738|fgenesh2_kg.6__872__AT5G09280.1 1432 0.0
> Ahg487738 jgi|Araly1|487738|fgenesh2_kg.6__872__AT5G09280.1
Length=897
Score = 1432 bits (775), Expect = 0.0
Identities = 859/899 (96%), Gaps = 7/899 (1%)
Strand=Plus/Plus
Query 1 ATGACGGGAAATATCGGTAAAGGAGTCACACAATACAAAGTAACCGACCCGTCTGATGAT 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGGGAAATATCGGTAAAGGAGTGACACAATACAAAGTAACCGACCCTTCTGATGAT 60
Query 61 CCTCTGAACCCTAAACCTGGAACCCTAAGATACGGAGCAACACTCGTCAAAGGTAAAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCTGAACCCTAAACCTGGAACCCTAAGATACGGAGCAACACTCGTCAAAGGTAAAAAA 120
Query 121 TGGATCACATTCAAAAGAAACATGAAGATCAAGCTTCATAAACCGCTTCTAATCAGCAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGATCACATTCAAAAGAAACATGAAGATCAAGCTTCATAAACCGCTTCTAATCAGCAGC 180
Query 181 TTCACGGCACTCGATGGTCGAGGTGCTAGTGTTCACATCTCGGGTCCCGCTTGCCTCATA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTCACGGCACTCGATGGTCGAGGTGCTAGTGTTCACATCTCGGGTCCTGCTTGCCTCATA 240
Query 241 GTCTATAGAGCCACCGATGTGATCATTCATGGGCTTAAGATCCATGATTGTAAAGCTCAT 300
||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GTCTATAAAGCCACCGATGTGATTATTCATGGACTTAAGATCCATGATTGTAAAGCTCAT 300
Query 301 CCACCAAGCTCAGTGATGGGACCTGACTCAAAGATCATCCAACTTGGACACA-TGGATGG 359
||||| ||||||||||||||||| |||||||||||||| ||||||||||| | | || ||
Sbjct 301 CCACCGAGCTCAGTGATGGGACCAGACTCAAAGATCATTCAACTTGGACA-AGTTGACGG 359
Query 360 CGACGCTATCAGGCTAGTCACGGCTAAGAAAGTATGGATCGACCACAACACTCTCTATGA 419
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CGACGCGATTAGGCTAGTCACGGCTAAGAAAGTATGGATCGACCACAACACGCTCTATGA 419
Query 420 TTGCGAAGACGGTCTTCTAGATGTCACACTAGGGAGTACTGACGTCACAGTGTCGAACAA 479
||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||
Sbjct 420 TTGCGAAGACGGTCTTCTAGACGTCACACGAGGGACTACTGATGTCACAGTGTCGAACAA 479
Query 480 TTGGTTTAGGAACCAGGACAAGGTCATGCTTCTTGGACATGATGATGGCTATGTAAAAGA 539
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 TTGGTTTAGGAACCAAGACAAGGTCATGCTTCTTGGACATGATGATGGCTATGTAAGAGA 539
Query 540 CAAAGATATGAGGGTAACTGTTGTGTTTAACCACTTTGGTCCTAATTGCAACCAGAGAAT 599
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAAGAAATGAGAGTCACTGTTGTGTTTAACCACTTTGGTCCTAATTGCAACCAGAGAAT 599
Query 600 GCCAAGAGTGAGACATGGATATGCTCATGTTGCCAATAACTATTACCAAGGATGGACTCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCAAGAGTGAGACATGGATATGCTCATGTTGCCAATAACTATTACCAAGGATGGACTCA 659
Query 660 ATATGCAATTGGAGGAAGCATGAGCCCTCGTGTAAAGAGTGAATCAAACTATTTCGTGGC 719
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 660 ATATGCAATTGGAGGAAGCATGAGCCCTCGAGTAAAGAGTGAATCAAATTATTTCGTGGC 719
Query 720 ACCAAAATCCGGAAGCAAAGAGGTGTTGGAAAAGCACGGCCCAATTACGGCCCAGATCAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 ACCAAAATCCGGAAGCAAAGAGGTGTTGGAAAAGCACGGCCCAATTACGGTCCAGATCAA 779
Query 780 AGGTTCACAGTCGCAAACGCTAA-ACAGGTTAAAGTACTCACTTCTTCAGCCGGAGCGTT 838
|||||||| || ||||||||||| || | |||||| ||||||||||||||| ||||||||
Sbjct 780 AGGTTCACTGTTGCAAACGCTAAGACTG-TTAAAGAACTCACTTCTTCAGCTGGAGCGTT 838
Query 839 ACACTGCACCAGAAACTCCGTCTGTTAGTACAACAAC---GCTTAACATGACTTTTTAG 894
||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 839 ACACTGCACCAGAAATTCCGTCTGTTAGAACAACAACAACGCTTAACATGACTTTTTAG 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5