BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09290.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487739 jgi|Araly1|487739|fgenesh2_kg.6__873__AT5G09290.1 1812 0.0
Ahg496594 jgi|Araly1|496594|fgenesh2_kg.8__2410__AT5G64000.1 326 3e-88
> Ahg487739 jgi|Araly1|487739|fgenesh2_kg.6__873__AT5G09290.1
Length=1156
Score = 1812 bits (981), Expect = 0.0
Identities = 1098/1156 (95%), Gaps = 1/1156 (0%)
Strand=Plus/Plus
Query 1 TGTTTCGATGCCTTACGAGAAAGAGCTCGCTGCTGCTAAGAAAGCCGTCTCTCTAGCTGC 60
|||||||||| |||| ||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct 1 TGTTTCGATGTCTTATGAGAAGGAGCTTGCTGCTGCTAAAAAAGCCGTCTCTCTCGCTGC 60
Query 61 TCGTCTCAGCCAGGAAGTGCAGAAGTCTCTGTTGCAATCAGATGTCCGGTCAAAATCTGA 120
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCGTCTCAGCCAGGCAGTGCAGAAGTCTCTGTTGCAATCAGGCGTCCGGTCAAAATCTGA 120
Query 121 TAAAAGTCCGGTTACAGCTGCTGATTATGGATCCCAAGCTGTGATCAGTCATGTACTAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TAAAAGTCCGGTTACAGCTGCTGATTATGGATCCCAAGCTGTGATCAGTCATGTGCTAGA 180
Query 181 GAGAGAACTTCACCCTGAACCACTATACTTGGTTGCTGAAGAGAATGCAGAAGATCTGCA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAGAACTTCACCCTGAACCACTATACTTGGTTGCTGAAGAGAATGCAGAAGATCTGCA 240
Query 241 CAAGAATGGCGCCGAGGAATTTCTAGAAAGCATTACTAAGCTTGTGAACAATGCTCTAGC 300
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 241 AAAGAGTGGCGCGGAGGAATTTCTAGAAAGCATCACTAAGCTTGTGAACAATGCTCTACC 300
Query 301 TTCTGATGATTCCTACGCCAACTCTTCTCTTTCAATGGATGATGTAAGGAAGGCGATAGA 360
|||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct 301 TTCTGATGATTCCTACGCCAACTCTTCTCTTTCAGTGGAAGATGTAAGGAAGGCAATAGA 360
Query 361 CCACGGGAGGTCACAAGGCGGTTCCAGTGGCCGCCATTGGATTCTTGATCCTGTTGATGG 420
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 361 CCACGGGAGGTCACAAGGCGGTTCCAATGGTCGCCATTGGATTCTTGATCCTGTGGATGG 420
Query 421 AACCAGAGGGTTTGTAAAAGGAGAGGAATACGCTGTGGCATTAGCTTTGCTTGTGGAAGG 480
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 421 AACCAGAGGGTTTGTAAAAGGAGAGGATTACGCTGTGGCATTGGCTTTGCTTGTGGAAGG 480
Query 481 CAAAGTAGTGCTCGGTGTCATGGCTTGCCCGAAACTTGAGAATCACAAGTCTTCTTCTTC 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAAGTAGTGCTCGGTGCCATGGCTTGCCCGAAACTTGAGAATCACAAGTCTTCTTCTTC 540
Query 541 AGGATGCCTTTTCTTTGCTACAGTGGGAGAAGGAGCTTATGTGCAATCGCTTGAAGGCGA 600
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 541 AGGATGCCTTTTCTTTGCTACAGTGGGAGGTGGAGCTTACGTGCAATCGCTTGAAGGAGA 600
Query 601 CTCTCATCCTCCACAGAAGGTGCAAGTGAGCAACATTGAGAATCCTGAAGAAGCAACCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCTCATCCTCCACAGAAGGTGCAAGTGAGCAACATTGAGAATCCTGAAGAAGCAACCTT 660
Query 661 TGTGGAATCATCCCACAAACCAATCCCCATCCATAGCTCCATTGCCAATAAACTTGGGAT 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCGAATCATCCCACAAACCAATCCCCATCCATAGCTCCATTGCCAATAAACTTGGGAT 720
Query 721 CAAAGCTCCACCTCTAAGAATCCATAGTCAAGTGAAGTACGCAGCTCTGGCTCGAGGAGA 780
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 721 CAAAGCTCCACCTCTAAGAATCCATAGTCAAGTGAAGTACGCTGCTCTAGCTCGAGGAGA 780
Query 781 TGCAGAGATATACTTGCGTTTCACTCTTAAAGGGTACCGAGAGTTCATATGGAACCATGC 840
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 781 TGCAGAGATATACTTGCGTTTCACTCTCAAAGGGTACCGTGAGTCCATATGGAACCATGC 840
Query 841 TGCTGGTGCAATCATCACAACAGAAGCTGGAGGTGTAGTTTGCGATGCTGACGGGAATCC 900
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 TGCTGGTGCAATCATCACCACAGAAGCTGGAGGTGTAGTTTGCGATGCTGATGGGAATCC 900
Query 901 TCTGGACTTCTCGAGAGGAAATCATCTTGAACACAAAACAGGGATCGTGGTCAGCACCAA 960
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 901 TCTGGACTTCTCGAGAGGAAAGCATCTTGAACACAATACAGGGATCGTGGTCAGCACCCA 960
Query 961 GAACCTTATGCCACGGCTCTTGAAAGCCATTAGAGAATCCATAGAAGAGGAGATGCTTCT 1020
||| || ||||||||| ||||||| ||| | ||||||||||| |||||||| | ||||||
Sbjct 961 GAAGCTCATGCCACGGATCTTGAAGGCCGTCAGAGAATCCATGGAAGAGGAAAAGCTTCT 1020
Query 1021 CTCTGAGACACAACTGAAACTGTAATATATGTACTGCCTGAAATAGCTATCTGGTGTATA 1080
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1021 CTCTGAGACGCAACTGAAACTGTAATATATGTACAGTCTGAAATAGCTATCTGGTGTATA 1080
Query 1081 TCACACATCTGCCGTTGTGTACTGTCAGACACTGAAGAAATT-GTATGCTTTTGAATATT 1139
|||| |||||||| ||||||||||||||| ||||||||| || ||||||||||||||| |
Sbjct 1081 TCACGCATCTGCCATTGTGTACTGTCAGATACTGAAGAAGTTTGTATGCTTTTGAATAGT 1140
Query 1140 GGTCTCGATTTCAATA 1155
||||||||||||||||
Sbjct 1141 GGTCTCGATTTCAATA 1156
> Ahg496594 jgi|Araly1|496594|fgenesh2_kg.8__2410__AT5G64000.1
Length=1209
Score = 326 bits (176), Expect = 3e-88
Identities = 410/523 (78%), Gaps = 16/523 (3%)
Strand=Plus/Plus
Query 3 TTTCGATGCCTTACGAGAAAGAGCTCGCTGCTGCTAAGAAAGCCGTCTCTCTAGCTGCTC 62
|||| ||| |||| ||||| ||||| || ||||| |||||||| ||||||||||||||||
Sbjct 9 TTTCAATGTCTTATGAGAAGGAGCTAGCCGCTGCAAAGAAAGCTGTCTCTCTAGCTGCTC 68
Query 63 GTCTCAGCCAGGAAGTGCAGAAGTCTCTGTTGCAATCAGATGTCCGGTCAAAATCTGATA 122
|||||||||||||||| |||||| ||||||||||||| | || || |||||| ||||
Sbjct 69 GTCTCAGCCAGGAAGTTCAGAAGACTCTGTTGCAATCCCAAGTATGGAAAAAATCCGATA 128
Query 123 AAAGTCCGGTTACAGCTGCTGATTATGGATCCCAAGCTGT-GATCAGTCATGTACTAGAG 181
|||||| ||||| || |||||||| || || |||||||| | | |||| |||| | |||
Sbjct 129 GAAGTCCAGTTACTGCAGCTGATTACGGCTCACAAGCTGTAGTT-AGTCTTGTATTGGAG 187
Query 182 AGAGAACTTCACCCTGA-ACCACTAT-ACTTGGTTGCTGAAGAG-AATGCAGAAGATCTG 238
|| || || || ||||| | ||| | | || || || |||||| || | | |||||||
Sbjct 188 AGGGAGCTCCAACCTGATAA-ACTGTCA-TTAGTAGCCGAAGAGGAAA-CTGGAGATCTG 244
Query 239 CACAAGAATGGC-GCCGAGGAATTTCTAGAAAGCATTACTA-AGCTTGTGAACA-ATGCT 295
| || || || | ||| |||||| || | ||||| | | |||||||| | || ||
Sbjct 245 CGGAAAAAGGGAAGT-GAGTTGTTTCTACAAGGTATTACAACA-CTTGTGAA-AGATACT 301
Query 296 CTAGCTTCTGATGATTCCTACGCCAACTCTTCTCTTTCAATGGATGATGTAAGGAAGGCG 355
||||||||||| || || ||| || |||| |||| || | |||||||| || ||
Sbjct 302 CTAGCTTCTGAGGAATCGTACACCGGCTCTCCTCTATCCACAGATGATGTGTTAAATGCT 361
Query 356 ATAGACCACGGGAGGTCACAAGGCGGTTCCAGTGGC-CGCCATTGGATTCTTGATCCTGT 414
|||||| ||| | ||| |||||||| ||| || | ||| ||| ||||||| ||| |
Sbjct 362 ATAGACTGCGGTAAATCAGAAGGCGGTAGCAGCGGTTC-CCACTGGGTTCTTGACCCTAT 420
Query 415 TGATGGAACCAGAGGGTTTGTAAAAGGAGAGGAATACGCTGTGGCATTAGCTTTGCTTGT 474
|||||||||||||| ||||||| ||||||| |||| ||||||| | |||| ||||||||
Sbjct 421 AGATGGAACCAGAGGATTTGTAAGAGGAGAGCAATATGCTGTGGGACTAGCGTTGCTTGT 480
Query 475 GGAAGGCAAAGTAGTGCTCGGTGTCATGGCTTGCCCGAAACTT 517
|||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 481 GGAAGGCAAAGTGGTGCTTGGTGTCATGGCTTGCCCGAATCTT 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5