BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09300.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350155 jgi|Araly1|350155|fgenesh1_pg.C_scaffold_6000748 2194 0.0
> Ahg350155 jgi|Araly1|350155|fgenesh1_pg.C_scaffold_6000748
Length=1419
Score = 2194 bits (1188), Expect = 0.0
Identities = 1344/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 67 ATGGCTCTGCATTTGAGATCTTCTTTTTCATCAAAATCGACTTTACTCAATATTCTCAGA 126
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 1 ATGGCTCTGCATTTGAGATCTTCTCCTTCATTGAAATCGACTTTCCTCAACATTCTCAGA 60
Query 127 CACAACCTCGGTTTCGGTTCTAGGAGCCACGTGACTCGGCATATCCGCC-AAATCCTACC 185
|| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 61 CAAAACCTGGGTTTCGGTTCTAGGAGCCACGTGACTCGGCATATCCGCCAAAAT-CTACC 119
Query 186 ACATGACCCCCCGCTTCGAGGTTCACAGAATCCAATTAG-CCGTCTCTGTAATACCATGG 244
|||||| || ||||||||||||||||||||||||||| | | || ||||||| ||| |||
Sbjct 120 ACATGATCCTCCGCTTCGAGGTTCACAGAATCCAATTCGTCGGT-TCTGTAACACCGTGG 178
Query 245 CGGAGCCAGAGACACTCTCTAGTTTTGTTCAGCACGAATACGCCAACAATCATCAGGTAA 304
| |||||||| |||||||| ||||||| |||||||||| |||||| |||||||||||| |
Sbjct 179 CAGAGCCAGAAACACTCTCGAGTTTTGGTCAGCACGAAGACGCCAGCAATCATCAGGTCA 238
Query 305 TGGACTTTCCAGGAGGAAAGGTAGCTTTCACACCTGAGATTCAATTCATATCAGAATCTG 364
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 239 TGGATTTTCCAGGAGGAAAGGTAGCTTTCACACCTGAGATTCGATTCATATCAGAATCCG 298
Query 365 ATAAAGAGCGTGTTCCTTGCTACCGTGTTCTTGATGACAATGGCCAACTTATCACCAACA 424
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTCAGACCGTGTTCCTTGCTACCGTGTTCTTGATGACAATGGCCAACTTATCACCAACA 358
Query 425 GCCAGTTTGTTCAGGTTAGCGAGGAGGTTGCGGTGAAGATATATAGCGATATGGTTACTC 484
|||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||
Sbjct 359 GCCAGTTTGTTCAGGTTAGCGAAGAAGTTGCCGTAAAGATATACAGCGATATGGTTACTC 418
Query 485 TTCAAATTATGGATAACATATTCTACGAAGCTCAAAGACAAGGCAGACTTTCCTTTTACG 544
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTCAAATAATGGATAACATATTCTACGAAGCTCAGAGACAAGGCAGACTTTCCTTTTACG 478
Query 545 CTACTGCAATCGGTGAAGAGGCCATTAATATTGCATCAGCTGCTGCTCTCACTCCTCAAG 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 CTACTGCAATCGGTGAAGAGGCCATTAATATTGCATCAGCTGCTGCTCTCACCCCTCAAG 538
Query 605 ATGTTATCTTTCCTCAGTACAGAGAGCCTGGTGTTCTACTATGGCGTGGTTTCACGCTTC 664
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 539 ATGTTATCTTTCCTCAGTACAGAGAGCCTGGTGTTCTGTTATGGCGTGGTTTCACTCTTC 598
Query 665 AAGAATTTGCAAACCAGTGTTTTGGGAACAAATCTGATTATGGAAAAGGCAGGCAGATGC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGAATTTGCAAACCAGTGTTTTGGGAACAAATCTGATTATGGAAAAGGCAGGCAGATGC 658
Query 725 CCGTCCACTATGGCTCTAACAAGCTCAATTATTTTACCGTTTCTGCAACCATTGCTACGC 784
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 CAGTCCACTATGGCTCTAACAAGCTCAATTATTTTACCGTTTCTGCAACAATTGCTACGC 718
Query 785 AGTTACCAAACGCGGTTGGTGCTGCTTATTCCTTAAAGATGGACAAGAAGGATGCATGTG 844
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 AGTTACCAAATGCGGTTGGTGCTGCTTATTCCTTAAAGATGGACAGGAAGGATGCATGTG 778
Query 845 CGGTCACATATTTTGGCGATGGTGGCACGAGTGAGGGAGATTTCCATGCTGCTTTGAATA 904
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGTCACATATTTTGGCGATGGTGGCACGAGTGAGGGAGATTTCCATGCTGCTTTGAATT 838
Query 905 TTGCAGCAGTTATGGAAGCTCCTGTTTTATTTATTTGCCGGAACAATGGATGGGCCATCA 964
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 839 TTGCAGCAGTTATGGAAGCTCCTGTTATATTTATTTGCCGGAACAATGGATGGGCAATCA 898
Query 965 GTACTCCCACCTCAGATCAGTTCCGAAGTGATGGTGTAGTGGTCAAAGGCCGTGCTTATG 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 899 GTACTCCCACCTCAGATCAGTTCCGAAGTGATGGTGTAGTGGTCAAAGGCCGGGCCTATG 958
Query 1025 GAATTCGAAGTATACGTGTGGATGGAAATGATGCACTTGCCATGTACAGTGCGGTACATA 1084
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 959 GCATTCGAAGTATACGTGTGGATGGAAATGATGCACTTGCTATGTACAGTGCGGTGCATA 1018
Query 1085 CTGCTCGCGAAATGGCAATTAGAGAACAGAGGCCAATCTTGATTGAGGCCTTAACATACC 1144
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGCTCGCGGAATGGCAATTAGCGAACAGAGGCCAATCTTGATTGAGGCCTTAACATACC 1078
Query 1145 GTGTAGGACACCATTCAACATCAGATGATTCCACTAGGTACCGCTCTGCAGGTGAGATAG 1204
| |||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||
Sbjct 1079 GCGTAGGACACCATTCAACATCAGATGATTCCACAAGGTACCGCTCTTCTGATGAGATAG 1138
Query 1205 AGTGGTGGAACAAAGCAAGAAACCCACTGTCTAGGTTTAGGACATGGATTGAAAGTAATG 1264
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 AGTGGTGGAACAAAGCAAGAAACCCGTTGTCTAGGTTTAGGACATGGATTGAAAGTAATG 1198
Query 1265 GCTGGTGGAGTGATAAAACGGAATCGGATCTGAGAAGCAGAATCAAAAAAGAGATGTTAG 1324
|||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 GCTGGTGGAGTGATGAAGCAGAATCGGATCTGAGAAGCAGAATCAAGAAAGAGATGTTAG 1258
Query 1325 AAGCGCTCCGGGTTGCAGAGAAGACTGAGAAACCGAATCTGCAGAACATGTTCTCAGATG 1384
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1259 AAGCGCTCCGGGTTGCAGAGAAGACTGAGAAACCGAATCTGAAGAACATGTTCTCAGATG 1318
Query 1385 TCTACGATGTTCCTCCATCTAACCTCAGGGAACAAGAACTTCTGGTGAGGCAGACGATCA 1444
|||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1319 TCTACGATGTTCCTCCTTCTAACCTGATGGAACAAGAACTTCTGGTGAGGCAGACGGTCA 1378
Query 1445 ATAGTCACCCACAAGATTACCCATCAGATGTGCCTCTTTAG 1485
|||||||||| ||||| |||||| ||||||| |||||||||
Sbjct 1379 ATAGTCACCCCCAAGACTACCCAACAGATGTTCCTCTTTAG 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5