BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09310.1

Length=689
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940390 jgi|Araly1|940390|scaffold_600934.1                        719    0.0  


> Ahg940390 jgi|Araly1|940390|scaffold_600934.1
Length=481

 Score =  719 bits (389),  Expect = 0.0
 Identities = 449/478 (94%), Gaps = 3/478 (1%)
 Strand=Plus/Plus

Query  22   TAGTGGCTGAGCAAAAATGGAGGCTACACGGAGCGACGACCCCAGTCTGAACCCTATACG  81
            |||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct  6    TAGTGGCTGAGC-AAAATGGAGGCTTCACGGAGCGACGATCCCAATCTGAACCCTATACG  64

Query  82   CAATCGGAATCCGAATCCGAA-TCCGAATCCAAACCCATTGTCGACGATCATCTCTTCAG  140
            |||||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||||
Sbjct  65   CAATCGGAATCCGAATCC-AACTCCGGCTCCGAACCCATTGTCGACGATCATCTCTTCAG  123

Query  141  CTCAGGTTTGGCCAACCATTGACGGTCCGTTGGGGTTAACGGAGGAAGCATCGGTGGATT  200
            | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  124  CGCAGGTTTGGCCAACCATCGACGGTCCGTTGGGGTTAACGGAGGAAGCATCGGTGGACT  183

Query  201  ACGCTCGTCGATTCTACAAGTTCGGTTTCGCTCTCTTGCCTTGGCTTTGGTTTGTCAATT  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  ACGCTCGTCGATTCTACAAGTTCGGTTTCGCTCTCTTGCCTTGGCTTTGGTTTGTCAATT  243

Query  261  GCTTCTATTTCTGGCCTGTTCTCCGTCACTCTCGGGCTTTCCCTCAAATCCGCAATTATG  320
            ||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct  244  GCTTCTACTTCTGGCCTGTTCTTCGTCACGCTCGTGCTTTCCCTCAAATCCGCAATTATG  303

Query  321  TTGTCCGGTCAGCAATTGGCTTTAGTGTCTTTACAGCTCTTCTCTCCGCGTGGGCATTGA  380
            |||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct  304  TTGTCCGGTCAGCAATTGGCTTCAGTGTCTTTACTGCTCTTCTTTCTGCGTGGGCATTGA  363

Query  381  CGTTCTCGATAGGAGGAGAACAACTGTTCGGCCCTCTTTACGATAAGCTGGTTATGTACA  440
            | ||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||
Sbjct  364  CATTCTCGATAGGAGGAGAACAACTTTTTGGCCCTGTTTATGATAAGCTGGTTATGTACA  423

Query  441  ATGTTGCTGATCGTCTCGGCTTGTCTGGTTTGGCTTAGCTCCCACCGCCTTGtctctc  498
            | |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct  424  ACGTTGCTGATCGTCTCGGCTTGTCTGGCTTGGCTTAGCCCCCACAGCCTTGTCTCTC  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25313616888


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5