BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09320.1
Length=2491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487743 jgi|Araly1|487743|fgenesh2_kg.6__877__AT5G09320.1 1838 0.0
Ahg479493 jgi|Araly1|479493|fgenesh2_kg.3__2194__AT3G19770.1 917 0.0
> Ahg487743 jgi|Araly1|487743|fgenesh2_kg.6__877__AT5G09320.1
Length=2568
Score = 1838 bits (995), Expect = 0.0
Identities = 1184/1273 (93%), Gaps = 21/1273 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACACAGACGTCGTCTCGGGTCTGCATAATTTCTTGAGTAAACCCTCCGCCAAA 60
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGAACACGGACGTCGTCTCGGGTCTGCATAATTTCTTGAGTAAACCATCCGCCAAA 60
Query 61 GATTTCATCAAATCAATCAAAAGTTTCATTGTTTCGATCTTGAACACTGCACCAGACCCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTTCATCAAATCAATTAAAAGTTTCATTGTTTCGATCTTGAACACTGCACCAGACCCT 120
Query 121 GAAAAAGATTGTGATGCAGTTCAGGACTTCTTTTACAAGATGGAGTCTGCTTTCAGGGCT 180
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 121 GAAAAAGATTGTGATGCAGTTCAGGAATTCTTTTCCAAGATGGAGTCTGCTTTCAGGGCT 180
Query 181 CATCCACTTTGGTCTGGTTGTTCCGATGATGAGTTAGACAATGCGGGAGATGGCCTGGAG 240
||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||
Sbjct 181 CATCCACTTTGGTCTGGTTGTTCCGCTGATGAGTTACACAATGCAGGAGATGGACTGGAG 240
Query 241 AAGTATGTCATGACAAAGTTATTTCCCCGGGTTTTTGCATCAAACACCGAGGATGTTATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTATGTCATGACAAAGTTATTTCCCCGGGTTTTTGCATCAAACACCGAGGATGTTATA 300
Query 301 TCCGATGAGAAACTCTTTCAGAAGATTTCCTTGGTTCAAC-AGTTCATATCTCCTGAAAA 359
|| ||||||||||||||||| ||||| || || |||||| | |||||||||||||||||
Sbjct 301 TCGGATGAGAAACTCTTTCACAAGATGTCATTATTTCAACTA-TTCATATCTCCTGAAAA 359
Query 360 CTTGGATATACAACCAACTTTTCAAAACCAAACATCTTGGCTTCTAGCTCAAAAAGAGCT 419
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 360 CTTGGATATACAACCAACTTTTCAAAACCAAACATCATGGCTCCTAGCTCAAAAAGAGCT 419
Query 420 CCAGAAGATAAATATGTACAATGCTCCTCGTGATAAGCTTATGTGTATCCTTAGGTGCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCAGAAGATAAATATGTACAATGCTCCTCGTGATAAGCTTATGTGTATCCTTAGGTGCTG 479
Query 480 CAAAGTCATTAATAACTTACTTCTAAATGCTTCAATTGCTTCAAACCAGAATGAACCTGG 539
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 480 CAAAGTCATTAACAACTTACTTCTAAATGCTTCAATTGCTTCAAACGAGAATGCACCTGG 539
Query 540 AGCTGACCAATTTCTTCCTGTTCTCATATATGTTACCATTAAGGCTAACCCTCCCCAGTT 599
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 540 AGCCGACCAATTTCTTCCTGTTCTCATATATGTTACCATTAAGGCTAACCCTCCACAACT 599
Query 600 TCACTCAAACTTGTTGTATATACAAAGATATAGGCGTCAATCTAAACTGGTTGGCGAAGC 659
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 600 TCACTCAAACTTATTGTATATACAAAGATATAGGCGTCAATCTAAACTTGTTGGTGAAGC 659
Query 660 TGGCTACTTATTCACCAACATACTCTCTGCAGAGTCATTCATCTCAAATATTGATGCAAA 719
|| |||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TGCCTACTTGTTCACAAATATACTCTCTGCAGAGTCATTCATCTCAAATATTGATGCAGA 719
Query 720 ATCCCTCTCCATGGATGAAGCTGACTTTGAAACTAAAATGAAATCTGCACATGCACGTCT 779
||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 720 ATCCCTCTCAATGGATGAAGCTGACTTTGAAAATAAAATGAAATCTGCACGGGCACGTCT 779
Query 780 TTCTGGTC-CGGGAAGCCAGTCTTATCAAACGGATCACGGTGCTGCATTACCCACTGCTC 838
|||||||| ||| ||||||||||||||||| ||||||| |||||| | | |||||||
Sbjct 780 TTCTGGTCTCGG-AAGCCAGTCTTATCAAAATGATCACGACGCTGCACT-C--ACTGCTC 835
Query 839 ATAATACTAAGAGGGAAAACATGCTTCTGCATACAAAATCAACTGATAGTTTCTCTGGTA 898
||||| ||||||||||||||| || ||||||||||||||| |||||||| |||||||||
Sbjct 836 ATAATCCTAAGAGGGAAAACACGCCTCTGCATACAAAATCGTCTGATAGTCTCTCTGGTA 895
Query 899 CCAATGAAACACTGAGTGAAACACCAATAAAGAAAGCTGACCCCATTACCGATTTGGAAA 958
|||||||||||| || | |||||||| |||| ||||||||||||||||||
Sbjct 896 CCAATGAAACAC---------CA--A-TAAAGAAATCTGAATCCATTACCGATTTGGAAA 943
Query 959 ATAAGGGCGCTGCTACGCTTTTGAATGATAGAAGTGAGGCAACCAAAATATTTCAAGAAT 1018
||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 944 ATAAGGGCGCTTCTACGCTTTCGAAGGATAGAAGTGAGGCAACCAAAATCTTTCAAGAAT 1003
Query 1019 ATCCTTACATGTTTGCCAGTGTTGGTGATTTAAAGATAGGAGATGTTGAAGACTTGCTTA 1078
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1004 ATCCTTACATGTTTGCCAGTGTTGGTGATTTAAAGATAGGATATGTTGAAGACTTGCTAA 1063
Query 1079 ATAATTATAAACAGCTAGTTTTCAAATATGTTTGCCTTTCCAAAGGCTTGGGTGATGCAA 1138
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ATAGTTATAAACAGCTCGTTTTCAAATATGTTTGCCTTTCCAAAGGCTTGGGTGATGCAA 1123
Query 1139 CATCTTTAACTCCATGC-ATTTCACCATTGCAAGCGTCTAAAGTCTCTGAGAATCATACA 1197
||||||| |||||| | ||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 1124 AATCTTTAGCTCCAT-CTATTTCACCATTACAAGCGTCTAAAGACTCTGACAATCATACA 1182
Query 1198 ACATTGTCTTCAGATTTTCAAACGAAAAGCGAAACTGACAGGAGCGTTGATAATTTGTTT 1257
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1183 ACATTGTCTTCAGATGTTCAAACGAAAAGCGAAACTGACAGTAGCGTTGATGATTTGTTC 1242
Query 1258 CGAGCTCTACAAG 1270
|| ||||||||||
Sbjct 1243 CGGGCTCTACAAG 1255
Score = 1640 bits (888), Expect = 0.0
Identities = 1060/1138 (93%), Gaps = 31/1138 (3%)
Strand=Plus/Plus
Query 1341 AACGGCGACTATGGAAGGGATTGGACTGCGAAGTTGCGGAGATGATATTCTCCGTCTCGG 1400
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 AACGGCGAGTATGGAAGGGATTGGACTGCGAAGTTGCGGAGATGATATTCTCCGTCTCGG 1517
Query 1401 ATTCAAGCTACGCGGTGGTACCGGTGGCCGGATTCAGATTCTCCAGCGAGCTATGGTG-A 1459
||| || |||||||||||| ||| |||||||||| |||||||| ||||||||||| | |
Sbjct 1518 ATTTAAATTACGCGGTGGTATCGGCGGCCGGATTCCGATTCTCCGGCGAGCTATGG-GAA 1576
Query 1460 TAAAAATGAGAGACCGTAGCAAGAACAGGAAACCATTGCAGAGAGGACGAATGCTCAGTA 1519
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1577 TAAAGATGAGAGACCGTAGCAAGAACAGGAAACCGTTGCAGAGAGGTCGAATGCTCAGTA 1636
Query 1520 TCGAAGCGATTCAAGCGGTTCAAGCCCTGAAGCGAGCCAAtccacttcttcctcctcctc 1579
||||||||||||||||||||||||||||||||||||| ||| | | |||| || ||||
Sbjct 1637 TCGAAGCGATTCAAGCGGTTCAAGCCCTGAAGCGAGCTAAT-C-C-TCTT-CT--TCCT- 1689
Query 1580 ccgttccttctacttccacgacttcttcttcctcAGCTCTGCTTGATCGTGTAATCATTT 1639
|| ||| | | | | | |||||||||||||||||||| |||||||||||||||| |
Sbjct 1690 CC--TCC-T-T-C-T---C--CTTCTTCTTCCTCAGCTCTGGTTGATCGTGTAATCATCT 1738
Query 1640 CTAAATTCCGTCGGCTCTTGAAATTCGATATGGTCGCCGTTCTCAGAGAACTTCTACGCC 1699
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CCAAATTCCGTCGGCTCTTGAAATTCGATATGGTCGCCGTTCTCAGAGAACTTCTACGCC 1798
Query 1700 AAAACGAGTGCTCTCTAGCTCTCAAGGTTTTTGAAGAGATTAGAAAGGAGTATTGGTACA 1759
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1799 AAAACGAGTGCTCTCTAGCTCTCAAGGTTTTTGAAGAGATTCGAAAGGAGTATTGGTACA 1858
Query 1760 AGCCTCAGGTGAGAATGTACACAGATATGATCACTGTAATGGCGGATAATAGTTTGATGG 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGCCTCAGGTGAGAATGTACACAGATATGATCACTGTAATGGCGGATAATAGTTTGATGG 1918
Query 1820 AAGAGGTCAATTATCTTTACTCAGCTATGAAATCAGAAAAGGGTTTAATGGCTGAGATTG 1879
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1919 AAGAGGTCAATTACCTTTACTCAGCTATGAAATCAGAAAAGGGTTTAATGGCTGACATTG 1978
Query 1880 AATGGTTCAACACTCTCTTGACGATTCT-CTTGAATCATAAGCTTTTTGATCTTGTCATG 1938
|||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 1979 AATGGTTCAACACTCTCTTGACGATTCTTCT-GAATCATAAGCTGTTTGATCTTGTCATG 2037
Query 1939 GATTGCTATGCCTTTATGCAATCTATTGGCTATGAGCCTGATAGAGCCTCCTTTAGGGTT 1998
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2038 GATTGTTATGCCTTTATGCAATCTATTGGCTACGAGCCTGATAGAGCCTCCTTTAGGATT 2097
Query 1999 TTAGTCTTAGGTCTTGAATCAAATGGTGAAATGGGTTTATCAGCTATTGTTAGGCAAGAT 2058
||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 2098 CTAGTCTTAGGTCTTGAATCAAATGGCGAAATGAGTTTATCCGCTATTGTTAGGCAAGAT 2157
Query 2059 GCTCATGAGTATTATGGTGAATCACTCGAGTTTATCGAAGAAGATGAAGAAATCTCTAGT 2118
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2158 GCTCATGAGTATTACGGTGAATCACTCGAGTTTATCCAAGAAGAGGAAGAAATCTCTAGT 2217
Query 2119 GGGACTAGTGTGTTGATCTAATGATGGAGCGAAAGA-GTTGAGAGCTTGTAGCTCTTTCT 2177
|||||| |||||||||||||| ||||||| ||| | |||||||| ||| |||| ||||
Sbjct 2218 GGGACTGGTGTGTTGATCTAACAATGGAGCAAAA-ACGTTGAGAGATTGGAGCT-TTTC- 2274
Query 2178 TCATGGTTCTATATTCAGTCGAGCTCGAGGTTTGATCATATCGTAATACTAATACCTTCC 2237
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2275 --ATGGTTCTATGTTCAGTCGAGCTCGAGGTTTGATCATATCGTA-TACTAATACCTTCC 2331
Query 2238 GAGTATGCCCGATGAGATGATGCGTCGTTAGCCAAACCATATCATGTAGGCTTGTAACAT 2297
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2332 AAGTATGCCGGATGAGATGATGCGTTGTTAGCCAAACCATATCATGTAGGCTTGTAACAT 2391
Query 2298 AGGAATGTTACCGAGTATGCGAGTTTTGATTGCCTGAACTTGGATCTGTTCCAAGTCACT 2357
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2392 AGAAATGTTACCGAGTATGCGAGTTTTGATTGCCTGAACTAGGATCTGTTCCAAGTCACT 2451
Query 2358 CAAGTCACTCATGTCTATGGAGACATTTATAGCTTCAAATTCCATTACAATTGAAGTTTT 2417
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2452 CAAGTCAC-CATGTCTATGGAGACATTTATAGCTTCAAATTCCATCACAATTGGAGTTTT 2510
Query 2418 GATATTTGTAAAGCTCTTGTTGATGTTATAAGTACAATTT-GAGTAATCAAATATTTA 2474
| |||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 2511 GTTATTTGTAAACCTCTTGTTGATGTTATAAGTACACTTTTGAGTATTCAAATATTTA 2568
> Ahg479493 jgi|Araly1|479493|fgenesh2_kg.3__2194__AT3G19770.1
Length=2023
Score = 917 bits (496), Expect = 0.0
Identities = 735/848 (87%), Gaps = 25/848 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAACACAGACGTCGTCTCGGGTCTGCATAATTT-CTTG-A--G-T----AAACCC 51
||||||||||| |||||| ||| ||| |||||| |||| || | | | | ||||||
Sbjct 91 ATGGAGAACACGGACGTCTTCTTGGGGCTGCATGATTTCCTGGAACGGATGCGCAAACCC 150
Query 52 TCCGCCAAAGATTTCATCAAATCAATCAAAAGTTTCATTGTTTCGA-TCTTGAACACTGC 110
|||||| |||||| ||||||| || ||||||||||||||||| | ||| ||||| |||
Sbjct 151 TCCGCCGGCGATTTCGTCAAATCCATTAAAAGTTTCATTGTTTC-ATTCTCGAACAATGC 209
Query 111 ACCAGACCCTGAAAAAGATTGTGATGCAGTTCAGGACTTCTTTTAC-AAGATGGAGTCTG 169
||||||||| ||||||||||||| | | |||||||| ||||||| | ||||||||| |||
Sbjct 210 ACCAGACCCGGAAAAAGATTGTGCTACTGTTCAGGAGTTCTTTT-CTAAGATGGAGGCTG 268
Query 170 CTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCCGATGATGAGTTAGACAATGCGGGAG 229
|||||||||||||||||||||||||||||||||| || || || || |||| ||||||||
Sbjct 269 CTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGACAGTGCGGGAG 328
Query 230 ATGGCCTGGAGAAGTATGTCATGACAAAGTTATTTCCCCGGGTTTTTGCATCAAACACCG 289
||||||| ||||||||||| ||||||||| ||||| ||||||| ||||| |||||||| |
Sbjct 329 ATGGCCTAGAGAAGTATGTTATGACAAAGCTATTTACCCGGGTATTTGCTTCAAACACTG 388
Query 290 AGGATGTTATATCCGATGAGAAACTCTTTCAGAAGATTTC-CTTGGTTCAACAGTTCATA 348
|||| |||||| | ||||||||||||||||||||||| || | |||||||||| |||||
Sbjct 389 AGGAGGTTATAGCTGATGAGAAACTCTTTCAGAAGATGTCAC-TGGTTCAACAATTCATT 447
Query 349 TCTCCTGAAAACTTGGATATACAACCAACTTTTCAAAACCAAACATCTTGGCTTCTAGCT 408
|||||||| || |||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct 448 TCTCCTGAGAATTTGGATATACAACCAACTTTTCAAAATGAATCATCATGGCTGCTAGCT 507
Query 409 CAAAAAGAGCTCCAGAAGATAAATATGTACAATGCTCCTCGTGATAAGCTTATGTGTATC 468
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 508 CAAAAAGAGCTCCAGAAGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATC 567
Query 469 CTTAGGTGCTGCAAAGTCATTAATAACTTACTTCTAAATGCTTCAATTGCTTCAAACCAG 528
|||| || |||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct 568 CTTAACTGTTGCAAAGTGATAAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAG 627
Query 529 AATGAACCTGGAGCTGACCAATTTCTTCCTGTTCTCATATATGTTACCATTAAGGCTAAC 588
|||| ||||||||| ||| |||||||||||||| | ||||||||||| || |||||||||
Sbjct 628 AATGCACCTGGAGCAGACGAATTTCTTCCTGTTTTGATATATGTTACAATAAAGGCTAAC 687
Query 589 CCTCCCCAGTTTCACTCAAACTTGTTGTATATACAAAGATATAGGCGTCAATCTAAACTG 648
||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 688 CCTCCACAACTTCACTCAAACTTGTTGTATATACAAAGATATAGGCGTGAGTCTAAACTT 747
Query 649 GTTGGCGAAGCTG-GCTACTTATTCACCAACATACTCTCTGCAGAGTCATTCATCTCAAA 707
||||| ||||||| | ||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 748 GTTGGTGAAGCTGCG-TACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCTAA 806
Query 708 TATTGATGCAAAATCCCTCTCCAT-GGATGAAGCTGACTTTGAAACTAAAATGAAATCTG 766
||||||||||||||| || || || |||||||||||| ||||||| || ||| ||||||
Sbjct 807 TATTGATGCAAAATCTCTTTC-ATTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTG 865
Query 767 CAC-ATGCACGTCTTTCTGGTCCGGGAAGCCAGTCTTATCAAAC-GGATCACGG-TGCTG 823
||| | ||||| |||||||| ||| ||||||||||||||||| || ||| || | |||
Sbjct 866 CACGA-GCACGAATTTCTGGTTTGGGCAGCCAGTCTTATCAAACTGG-TCATGGCT-CTG 922
Query 824 CATTACCC 831
||| ||||
Sbjct 923 CATCACCC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93892453925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5