BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09330.1
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487745 jgi|Araly1|487745|fgenesh2_kg.6__879__AT5G09330.2 2237 0.0
> Ahg487745 jgi|Araly1|487745|fgenesh2_kg.6__879__AT5G09330.2
Length=1873
Score = 2237 bits (1211), Expect = 0.0
Identities = 1468/1584 (93%), Gaps = 50/1584 (3%)
Strand=Plus/Plus
Query 1 GTTCTGGCTCGTCCTTCACGCCActctctcctatatctctctctcgctctcctcCCCCTT 60
||||||||| |||||||||||| |||| ||| ||| | ||||||||||||||||||||
Sbjct 2 GTTCTGGCTTATCCTTCACGCCA--CTCT-CTAAATC-C-CTCTCGCTCTCCTCCCCCTT 56
Query 61 TCCGCCGATCGTCCTTTCCCCACCGTCGAGTTTTTC-C-CTATC-C-ATCTCCGGGCTTT 116
| || |||||||||||| ||||| |||||||||||| | || || | || | ||||||
Sbjct 57 TGCGACGATCGTCCTTT-CCCACTGTCGAGTTTTTCTCTCTCTCTCAAT-AGCAGGCTTT 114
Query 117 ACGTTGCACACCAGATGTCTGTTGATCTCTGCAAGAAGAATCCATCTTTTCTTTGGTGTG 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 115 ACGTTGCACACCAGATGTCTGTTGATCTCTGCAAGAAGAACCCATCTTTTCTTTGGTGTG 174
Query 177 ACTGTGGTTATATGAGCAGGGGGAGGTTGTGGTGTTTTCAGATTATCCTCTTCAGGCACT 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 ACTGTGGTTATATGAGCAGGGGGAGGTTGTGGTGTTTTCAGATAATCCTCTTCAGGCACT 234
Query 237 GGACTTGACTTGTCTTCAATTCCTCGActtctctctctttcttcttctcctctcttcttt 296
| |||||| | || | | || || | ||| || || |||| || |
Sbjct 235 -G----GACTTG------A---CTTG-C--CT-TCAC-TTCGTCGACT--TCTC-TC--T 270
Query 297 ctcgtttctctgttttttttttctGCTTGA-TTTGATCAAAGGGTATTCGTTTCTGCTGC 355
|| ||| || |||||||||| || | ||||||||||||||||||| |||||||||
Sbjct 271 -TC-TTT-TC-----TTTTTTTCTG-TTTACTTTGATCAAAGGGTATTCGCTTCTGCTGC 321
Query 356 TCCTGTTTACTGTGAACTTGAAGACTAAGTTTTCTTTGCTAAACTCTCACTTTACTGGTG 415
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 322 TCCTGTTTACTGTGAATTTGAAGACTAAGTTTTCTGTGCAAAACTCTCACTTTACTGGTG 381
Query 416 AAGAGTTTACAGAAGATTGTTCAAAGTTTTCCCCTTTGGATTCTTCGCCAATGGGGAAAA 475
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 382 AGGAGTTTACGGAAGATTGTTCAAAGTTTTCCCCTTTGGA---TTCGCCAATGGGGAAAA 438
Query 476 CTCAACTCGCTCCTGGATTTCGTTTCCATCCGACTGATGTTGAACTCGTGAGGTATTACT 535
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 439 CTCAACTCGCTCCTGGATTTCGTTTCCATCCCACTGATGTTGAACTCGTGAGATATTACT 498
Query 536 TGAAGAGGAAAATACTGGGGAAAAAGCTCCTTGTCGATGCTATTGCTGAAGTTGACATTT 595
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGAAGAGGAAAGTACTGGGGAAAAAGCTCCTTGTCGATGCTATTGCTGAAGTTGACATTT 558
Query 596 ACAAGTTTGAACCCCCTGATTTACCTGATATGTCTTTTATAAGAAGTGGGGATCTTAAGT 655
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 559 ACAAGTTTGAACCCCCTGATTTACCTGATATGTCCTTTATAAGAAGTGGGGATCTTAAGT 618
Query 656 GGCACTTCTTCTGCCCCAGGGAAAAGAAGTATGCTAGTGGGGTAAGGGCAAACCGTGCAA 715
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 619 GGCACTTCTTCTGCCCGAGGGAAAAGAAGTATGCTAGTGGGGTTAGGGCAAACCGTGCAA 678
Query 716 CTGAGTGTGGCTACTGGAAGACCACGGGGAAGGAGAGACCAGTTCTGTGCAATTCTGAGG 775
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 679 CTGAGTGTGGTTACTGGAAGACCACAGGGAAGGAGAGACCAGTTCTGTGCAATTCTGAAG 738
Query 776 TTGTGGGAAAGATCAAAACTCTGGTTTATCACTTTGGCAAGTCGCCTCGTGGGGAGCGGA 835
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 739 TTGTGGGAAAGATAAAAACTCTGGTTTATCACTTTGGTAAGTCGCCTCGTGGGGAGCGGA 798
Query 836 CTGATTGGGTTATGCATGAATACAGGCTTGACGACAAAGTACTGACGCAGATGAATGTTC 895
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 799 CTGATTGGGTTATGCATGAATATAGGCTTGAAGACAAGGTACTGACGCAGATGAATGTTC 858
Query 896 CTCAGGATACTTATGTGGTGTGTGTTCTGTTCAAGAAAGATGGTCCTGGACCTAGAAATG 955
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 859 CTCAGGATACTTATGTGGTGTGTGTTCTGTTCAAGAAAGATGGCCCTGGACCTAGAAATG 918
Query 956 GAGCTCAATATGGAGCTCCGTTTAAGGAAGAGGACTGGAGTGATGAGGAAGTACGTACTG 1015
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 919 GAGCTCAATATGGAGCTCCATTTAGGGAAGAGGACTGGAGTGATGAGGAACAACGTACTG 978
Query 1016 ATGTTCCTTCTACTAGTAATCCCACAAACCTTCTTGAGCCTAGCAAAGAAACCACTCTGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATGTTCCTTCTACTAGTAATCCCACAAACCTTCTTGAGCCTAGCAAAGAAACCACTCTGG 1038
Query 1076 CTTTGACTGCCCCAGATGACTCCAATAAGGATTGTTTTGGTGGCATGATATCAGAGTCAT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1039 CTTTGACTGCCCCAGATGACTCCAATAAGGATTGTTTTGGTGGCATGATATCAGAATCAT 1098
Query 1136 GTGTCTCGGATTTCCTACCAGCTACAACTAATACCACCAGCGAGCTTCCACATCCAAGTG 1195
| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1099 GCGTCTCCGATTTCCTACCAGCTACAACTAATACCACCAGCAAGCTTCCACATCCAAGTG 1158
Query 1196 ATGCAGCTACCACTCCTATGTCTACTGCACCTCTGGCAGAGACCGTTCAGACCCCCAACA 1255
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1159 ATGCAGCTAACACTCCTATGTCTACTGCACCTCTGGCAGAGACCCTTCAGACCCCCAACA 1218
Query 1256 ATGATGACTTATATTCAATGTTGGATCTATTTGATGATGACGAAGAGTTCTTAGGGTTCA 1315
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1219 ATGATGACTTATATTCAATGTTGGATCTATTTGATGATGACGAAGAATTCTTAGGGTTCA 1278
Query 1316 ACAATAATGAGGTAAGATATGATCCCGGTGTCTCAGCTCCAGTTTGCTTAGAAGAAGAAG 1375
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 ACAATAATGAGGTAAGACATGATCCCGGTGTCTCAGCTCCAGTTTGCTTAGAAGAAGAAG 1338
Query 1376 GCATTTTCAACGGACTACCAGAGTTGAGCAGCATGCCAAGGACGGCCTCTTACGACCTAG 1435
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1339 GCATTTTCAACGGATTACCAGAGTTGAGCAACATGCCAAGGACGGCCTCTTACGACCTAA 1398
Query 1436 TTGAAAACTCGGAGTTATACCTAGAGCTACAAGACCTCACTGCTCCATTAAATCCCCAAA 1495
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1399 TTGAAAACTCGGAGTTATACCTAGAGCTACAAGATCTCACTGCTCCATTAAATCCTCATA 1458
Query 1496 CTGGGCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACAAGACCTCACTG 1555
||||||||||||||| | ||||||||| ||||||||||||||| | |||||||||||||
Sbjct 1459 TTGGGCTACAAGACCTAAGTGCTCCATTGAATCCTCAAACTGGGATGCAAGACCTCACTG 1518
Query 1556 CTCCATT-TAATCATCAAACTGGG 1578
| ||||| || || || |||||||
Sbjct 1519 CCCCATTATA-TCCTCCAACTGGG 1541
Score = 462 bits (250), Expect = 4e-129
Identities = 409/480 (85%), Gaps = 33/480 (7%)
Strand=Plus/Plus
Query 1695 GCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACATGACCTCACTTCTCC 1754
||||||||| |||||||||||||| |||||||| | ||||||||| ||||| | | ||||
Sbjct 1424 GCTACAAGATCTCACTGCTCCATTAAATCCTCATATTGGGCTACAAGACCTAAGTGCTCC 1483
Query 1755 ATTTAATCCTCAAACTGGGCTACAAGACCTCACTGCTCCATTAAATCCTCAAACTGGGAA 1814
||| ||||||||||||||| | |||||||||||||| |||||| |||||| |||||||||
Sbjct 1484 ATTGAATCCTCAAACTGGGATGCAAGACCTCACTGCCCCATTATATCCTCCAACTGGGAA 1543
Query 1815 TCGCAATGACCCGAGAAGCTCCTCCTTTCTGTATAATCAAGGCCATTTTGACTTCTCTGG 1874
|| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1544 TCTCAATGACCCGAGAAGCTCCTCCTATCTGTATAATCAAGGCCACTTTGACTTCTCTGC 1603
Query 1875 TGGTAATGATGATGATCCTTATGGCTTTTCTGCTTCCATGAGACATAGACCAAAAATGTa 1934
|| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1604 TGCTAATGATGATGATCCTTATGGCTTTTCTGCTTCCGTGGGACATAGACCAAAAATGTG 1663
Query 1935 aaaaaaGAAGAAGAGAAGAGAAGCAGGATTTACAAATC--CAACAGATGCAAATCAGACC 1992
||| || ||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1664 AAACGAG--GAAGAGAAGAGTAGCAGGATTTACAAAACAACAACAGATGCAAATCAGACA 1721
Query 1993 GAATAGAAGGAGGAGCAAGCACCTTTGTTTCTTGTCTTTGAATTATGATTTTTATTAGTC 2052
||| ||||||||||| || || || |||||||||||||||||| | ||| | | |
Sbjct 1722 GAAAAGAAGGAGGAG-AACCA--TT-GTTTCTTGTCTTTGAATT-T--TTT--A--A-T- 1768
Query 2053 AAAATCTTTTTAATGTGTCGAAACTTCCCTATCAACATTCTCTGTTTCATCCTTAGAATC 2112
| | || |||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 1769 ----T-T-------GT--CGAAACTTCCCTATCAACTTTCTCTGCTTCATCCTTAGATTC 1814
Query 2113 TCGTATTTCTTC-AGAGTATTCTCAACATTTATTCTTGTTTCTATTTTGCTATGGATTAT 2171
||||| || || | | |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1815 TCGTACTTGTTTGAAA-TATTCTCAACATTTATTCTTGTCTCTATTTTGCTATGAATTAT 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82541560915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5