BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09360.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487747 jgi|Araly1|487747|fgenesh2_kg.6__881__AT5G09360.1 2632 0.0
> Ahg487747 jgi|Araly1|487747|fgenesh2_kg.6__881__AT5G09360.1
Length=1710
Score = 2632 bits (1425), Expect = 0.0
Identities = 1619/1714 (94%), Gaps = 8/1714 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTCAAGCTCAACATTCCAAATACAATCATTAAAACTCTACAGACTATAGTCTTC 60
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1 ATGGAGTTCAAGCTCAACGTTCCAAATACAATCGTTAAAACACTACAGACTATAGTCTTC 60
Query 61 TTTCTCTTTGTTCTTCTTGCATTCCAAATCGCGGAAGCCGAGATTCACCACCACACTTTC 120
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTTCTCTTTGTTCTTCTTACATTCCAAATCGCGGAAGCCAAGATTCACCACCACACTTTC 120
Query 121 AAGATAAAGTCGAAAGCGTACACACGACTTTGTAATACCAACAAGATATTGACGGTGAAC 180
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAGATAAAGTCGAAAGCTTACACACGACTTTGTAATACCAAAAAGATATTGACGGTGAAC 180
Query 181 GGAGAATTTCCCGGACCAACGTTAAAAGCCTACCGTGGTGATAAGCTCATCGTCAATGTC 240
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 181 GGAGAATTTCCCGGACCAACGTTAAAAGCCTACCGTGGAGATAAGCTCGTCGTCAATGTC 240
Query 241 ATCAACAATGCAAAC-TACAACATTACTCTCCATTGGCACGGAGCAAGACAAATCAGGAA 299
|||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 ATCAACAACGC-AACTTACAACATTACCCTCCATTGGCACGGAGCAAGACAAATCAGGAA 299
Query 300 TCCATGGTCGGACGGACCCGAATATGTGACTCAATGTCCGATCCGACCAGGAGAGAGCTA 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TCCATGGTCGGACGGACCCGAATATGTGACTCAATGTCCGGTCCGACCAGGAGAGAGCTA 359
Query 360 TGTGTATAGAATCGATCTTAAGGTCGAAGAGGGAACGATTTGGTGGCATGCTCATAGCCA 419
||| |||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 360 TGTATATAAAATCGATCTTACGGTCGAAGAAGGAACGATTTGGTGGCATGCGCATAGCCA 419
Query 420 ATGGGCACGTGCCACCGTCCATGGAGCTTTCATTGTCTACCCCAAACGTGGCTCATCTTA 479
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 420 ATGGGCACGTGCCACCGTCCATGGAGCTTTTATTGTCTACCCCAAACTTGGCTCATCTTA 479
Query 480 TCCTTTTCCTAAGCCTCATCGTGAAATCCCGCTCATTCTAGGCGAATGGTGGAAGAAGGA 539
|||||||||||||||||| ||||||||||| |||||| |||| ||||||||| |||||||
Sbjct 480 TCCTTTTCCTAAGCCTCACCGTGAAATCCCTCTCATTTTAGGTGAATGGTGGGAGAAGGA 539
Query 540 AAACATAATGCATATACCAGGAAAAGCTAATAAAACCGGAGGAGAACCGGCCATCTCTGA 599
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 540 AAACATAATGCATATACCAGGAAAAGCTAATAAAACCGGAGGTGAACCAGCCATCTCTGA 599
Query 600 CTCATATACCATAAACGGACAACCCGGTTATCTATACCCCTGCTCTAAACCGGAAACATT 659
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CGCATATACCATAAACGGACAACCCGGTTATCTATACCCCTGCTCTAAACCAGAAACATT 659
Query 660 CAAAATAACGGTGGTGCGTGGCCGTCGATACCTTCTACGGATTATCAACGCCGTGATGGA 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 CAAAATAACGGTGGTGCGTGGCCGTCGATACCTTCTTCGGATTATCAACGCCGTGATGGA 719
Query 720 CGAAGAACTCTTCTTTGCAATCGCAAACCACACCTTAACCGTTGTAGCCAAAGACGGTTT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 CGAAGAACTCTTCTTTGCAATCGCAAACCACACCTTAACCGTTGTAGCCAAAGACGGTCT 779
Query 780 CTACTTAAAACATTTCAAATCTGATTATCTAATGATCACTCCGGGACAATCTATGGACGT 839
||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||
Sbjct 780 CTACTTAAAACATTTCAAAACCAATTACCTAATGATCACTCCGGGACAATCCATGGACGT 839
Query 840 CCTCCTCCATGCGAACCAACGG-CCTAACCACTACTTTGTGGCGGCCAGAGCTTACTCCT 898
|||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 840 CCTCCTCCATGCGAACCAACGGTCC-AACCATTACTTTGTGGCGGCTAGAGCTTACTCCT 898
Query 899 CCGCATTTGGTGCCGGTTTTGACAAAACCACCACCACAGCCATATTACAATACAAAGGTG 958
| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 899 CTGCAGTTGGTGCCGGTTTTGACAAAACCACCACCACAGCCATCTTAAAATACAAAGGTG 958
Query 959 ATACCTTAAACCGGATTAAACCGATTCTACCCTATCTGCCTCCTTACAATCGTACCGAGG 1018
| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 TTTCTTTAAACCGGGGTAAACCGATTCTACCCTATCTGCCTCCTTACAATCGAACCGAGG 1018
Query 1019 CATCTACCCGGTTCACTAACCAATTCAGAAGTCAGCGTCCGGTTAACGTCCCGGTTAAAA 1078
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 CATCTACCCGGTTCACTAACCAATTCAGAAGTCACCGTCCGGTTAACGTCCCGGTTAAAA 1078
Query 1079 TCAACACTCGTCTTCTCTACGCGATCTCCGTGAACTTGATGAATTGCTCCGACGATAGAC 1138
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 TCGACACCCGTCTTCTCTACGCGATCTCCGTGAACTTGATGAATTGCTCCGACGATAAAC 1138
Query 1139 CTTGTACCGGTCCGTTCGGTAAGAGATTCTCTTCGAGCATTAACAACATCAGCTTCGTGA 1198
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1139 CTTGTACCGGTCCGTTCGGGAAGAGATTCTCGTCGAGCATTAACAACATAAGCTTCGTGA 1198
Query 1199 ACCCATCGGTCGACATTCTCCGAGCTTATTATCGCCACATCGGAGGCGTTTTCCAGGAGG 1258
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 ACCCATCAGTCGACATTCTCCGAGCTTATTATCGCCACATCGGAGGCGTTTTCCAGGAAG 1258
Query 1259 ATTTCCCGAGAAATCCGCCGACGAAATTCAACTACACCGGTGAGAATCTTCCATTTCCGA 1318
||||||| |||||||||||| ||||||| ||||||| |||||||||||| |||||||
Sbjct 1259 ATTTCCCTAGAAATCCGCCGGCGAAATTTAACTACAATTTTGAGAATCTTCCGTTTCCGA 1318
Query 1319 CTAGGTTCGGGACGAAAGTTGTGGTTCTCGATTATAACTCGAGCGTTGAGCTGATTCTAC 1378
| ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||| |||
Sbjct 1319 CGAGGTTCGGGACGAAAGTGGTGGTTCTCGATTATAATTCTAGCGTCGAGCTGATTTTAC 1378
Query 1379 AGGGGAC-AACCGTGTGGGCTTCGA-ATATTCACCCGATTCATCTGCATGGGTATAACTT 1436
||||||| || ||||| |||||| | ||| ||||||||||||||| |||||||||| |||
Sbjct 1379 AGGGGACGAA-CGTGTTGGCTTC-AGATAATCACCCGATTCATCTCCATGGGTATAGCTT 1436
Query 1437 CTACGTCGTGGGTTCGGGTTTTGGGAATTTCGATCGTCGTAAAGATCCGTTGAGGTATAA 1496
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1437 CTACGTCGTGGGTTCCGGTTTTGGGAATTTCGATCGTCGGAAAGATCCGTTGAAGTATAA 1496
Query 1497 CCTAGTTGATCCACCGGAGGAGACAACCGTCGGTGTTCCTCGTAACGGTTGGACCGCCGT 1556
|||||||||||||||||||||||| || || |||||||| |||||||| |||||||||||
Sbjct 1497 CCTAGTTGATCCACCGGAGGAGACCACTGTTGGTGTTCCCCGTAACGGCTGGACCGCCGT 1556
Query 1557 CAGATTCGTAGCTAATAATCCAGGGGTGTGGTTGTTGCATTGCCATATAGAGAGACATGC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAGATTCGTAGCTAATAATCCAGGGGTGTGGTTGTTGCATTGCCATATAGAGAGACATGC 1616
Query 1617 CACATGGGGAATGAACACAGTGTTCATAGTGAAAGATGGACCGACTAAATCTTCCCGTAT 1676
||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||
Sbjct 1617 CACATGGGGAATGAACACAGTCTTCATAGTGAAAGATGGATCGACTAAATCATCCCGAAT 1676
Query 1677 GGTCAAGCCTCCTCCTGATCTTCCTTCTTGTTAG 1710
|||||||||||||||||||||||||||||||||
Sbjct 1677 TGTCAAGCCTCCTCCTGATCTTCCTTCTTGTTAG 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5