BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09370.1 Length=634 Score E Sequences producing significant alignments: (Bits) Value Ahg487748 jgi|Araly1|487748|fgenesh2_kg.6__882__AT5G09370.2 455 2e-127 Ahg898158 jgi|Araly1|898158|Al_scaffold_0005_2124 346 1e-94 > Ahg487748 jgi|Araly1|487748|fgenesh2_kg.6__882__AT5G09370.2 Length=666 Score = 455 bits (246), Expect = 2e-127 Identities = 374/432 (87%), Gaps = 23/432 (5%) Strand=Plus/Plus Query 3 CACAACTCTCATTTTCTTCTCTCTCGATTCTTGATATATCAGTAACCAAAAACACAGAGA 62 ||||||||||||| |||||||||||||||| | || | |||||||| |||||| ||| | Sbjct 1 CACAACTCTCATTCTCTTCTCTCTCGATTC-T--TA-AGCAGTAACC-AAAACAGAGA-A 54 Query 63 A-TTAAAACATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTT 121 | |||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 55 ACAAAAAAAATGGCTTTCTTCTCCACCGCGACATCTCTTCTCCTCCTCGTTCTCTCTGTT 114 Query 122 TCCTCTCCTTATGTTCATGGA------G--CCT-CCGAC---TGCGACACCCTTG-TGAT 168 ||||||||||||||||||||| | || ||||| || |||||| || | || Sbjct 115 TCCTCTCCTTATGTTCATGGAAACATTGTACCAGCCGACGAGTGTGACACCATTAATTAT 174 Query 169 TACCCTGTTCCCATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGC 228 |||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| |||| Sbjct 175 -ACCCTGTTGCCATGTTTACCTTTTATAACGATCGGGGGTCCGGCGGATACACCCTCAGC 233 Query 229 TTCATGCTGCTCCAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAG 287 ||||||||||||||||||| | | |||||||| |||||||||| | |||||||||| ||| Sbjct 234 TTCATGCTGCTCCAGTCTCCAGACTATTCTCGGTACGAAACCGGA-ATGTCTATGCAAAG 292 Query 288 GGTTGAAGAAGGCACCTTTAGGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCG 347 |||||||||| ||||||| |||||||||||||||||||||| |||| ||||||| |||| Sbjct 293 GGTTGAAGAACCCACCTTTGGGAATCAAACTCAACGTTACTAGATCTACTACTCTCCCCG 352 Query 348 TTGCTTGTAAACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTC 407 ||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| Sbjct 353 TTGTTTGTAAACTTAATGCTCCTCCGGCGTCAGCTTGTGATGCATTGGCTCCTGCTAGTC 412 Query 408 CTCCTACTGCTA 419 ||||| |||||| Sbjct 413 CTCCTGCTGCTA 424 > Ahg898158 jgi|Araly1|898158|Al_scaffold_0005_2124 Length=402 Score = 346 bits (187), Expect = 1e-94 Identities = 313/372 (84%), Gaps = 16/372 (4%) Strand=Plus/Plus Query 71 ATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTTTCCTCTCCT 130 ||||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCTTTCTTCTCCGCAGCAACATCTCTTCTCCTCCTAGTCCTCTCTGTTTCCTCTCCT 60 Query 131 TATGTTCATGGAGCC-T----CC-GACTGCGAC---ACCCTTGT-GATTACCCTGTTCCC 180 |||||||||||| | | || | || || |||||||| | || |||||||||| Sbjct 61 TATGTTCATGGAAACATTATACCAGCCTCCGGGTGTACCCTTGTTG-TTCCCCTGTTCCC 119 Query 181 ATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGCTTCATGCTGCTC 240 ||||||| | |||||| |||||||| ||||| ||||||||| || ||| |||||||| Sbjct 120 ATGTTTATCATTTATAACGATCGGGAGTACGATGGATACACCCTCAAATTCGTGCTGCTC 179 Query 241 CAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAGGGTTGAAGAAGG 299 |||||||| ||||| ||||||||| ||||| | |||||||||||||||||||||||| Sbjct 180 TAGTCTCAAGAATATCCTCGATACGGAACCGGA-ATGTCTATGCGAAGGGTTGAAGAACA 238 Query 300 CA-CCT-TTA-GGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCGTTGCTTGTA 356 | ||| ||| ||||||||||| ||||||||||| || |||||||||||| |||||||| Sbjct 239 CTGCCTCTTACGGAATCAAACTTAACGTTACTAAGGCTACTACTCTTCCCGATGCTTGTA 298 Query 357 AACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTCCTCCTACTG 416 || || |||||||||||||| ||||||||| | ||||| ||||||||||||||||| || Sbjct 299 AAGTTTATGCTCCTCCGGTGGCAGCTTGTGGTGCATTGTCTCCTGCTAGTCCTCCTGCTA 358 Query 417 CTAATGGGCAAG 428 |||||| ||||| Sbjct 359 CTAATGCGCAAG 370 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23216856453 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5