BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09370.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487748 jgi|Araly1|487748|fgenesh2_kg.6__882__AT5G09370.2 455 2e-127
Ahg898158 jgi|Araly1|898158|Al_scaffold_0005_2124 346 1e-94
> Ahg487748 jgi|Araly1|487748|fgenesh2_kg.6__882__AT5G09370.2
Length=666
Score = 455 bits (246), Expect = 2e-127
Identities = 374/432 (87%), Gaps = 23/432 (5%)
Strand=Plus/Plus
Query 3 CACAACTCTCATTTTCTTCTCTCTCGATTCTTGATATATCAGTAACCAAAAACACAGAGA 62
||||||||||||| |||||||||||||||| | || | |||||||| |||||| ||| |
Sbjct 1 CACAACTCTCATTCTCTTCTCTCTCGATTC-T--TA-AGCAGTAACC-AAAACAGAGA-A 54
Query 63 A-TTAAAACATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTT 121
| |||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 55 ACAAAAAAAATGGCTTTCTTCTCCACCGCGACATCTCTTCTCCTCCTCGTTCTCTCTGTT 114
Query 122 TCCTCTCCTTATGTTCATGGA------G--CCT-CCGAC---TGCGACACCCTTG-TGAT 168
||||||||||||||||||||| | || ||||| || |||||| || | ||
Sbjct 115 TCCTCTCCTTATGTTCATGGAAACATTGTACCAGCCGACGAGTGTGACACCATTAATTAT 174
Query 169 TACCCTGTTCCCATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGC 228
|||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct 175 -ACCCTGTTGCCATGTTTACCTTTTATAACGATCGGGGGTCCGGCGGATACACCCTCAGC 233
Query 229 TTCATGCTGCTCCAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAG 287
||||||||||||||||||| | | |||||||| |||||||||| | |||||||||| |||
Sbjct 234 TTCATGCTGCTCCAGTCTCCAGACTATTCTCGGTACGAAACCGGA-ATGTCTATGCAAAG 292
Query 288 GGTTGAAGAAGGCACCTTTAGGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCG 347
|||||||||| ||||||| |||||||||||||||||||||| |||| ||||||| ||||
Sbjct 293 GGTTGAAGAACCCACCTTTGGGAATCAAACTCAACGTTACTAGATCTACTACTCTCCCCG 352
Query 348 TTGCTTGTAAACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTC 407
||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 353 TTGTTTGTAAACTTAATGCTCCTCCGGCGTCAGCTTGTGATGCATTGGCTCCTGCTAGTC 412
Query 408 CTCCTACTGCTA 419
||||| ||||||
Sbjct 413 CTCCTGCTGCTA 424
> Ahg898158 jgi|Araly1|898158|Al_scaffold_0005_2124
Length=402
Score = 346 bits (187), Expect = 1e-94
Identities = 313/372 (84%), Gaps = 16/372 (4%)
Strand=Plus/Plus
Query 71 ATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTTTCCTCTCCT 130
||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTTTCTTCTCCGCAGCAACATCTCTTCTCCTCCTAGTCCTCTCTGTTTCCTCTCCT 60
Query 131 TATGTTCATGGAGCC-T----CC-GACTGCGAC---ACCCTTGT-GATTACCCTGTTCCC 180
|||||||||||| | | || | || || |||||||| | || ||||||||||
Sbjct 61 TATGTTCATGGAAACATTATACCAGCCTCCGGGTGTACCCTTGTTG-TTCCCCTGTTCCC 119
Query 181 ATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGCTTCATGCTGCTC 240
||||||| | |||||| |||||||| ||||| ||||||||| || ||| ||||||||
Sbjct 120 ATGTTTATCATTTATAACGATCGGGAGTACGATGGATACACCCTCAAATTCGTGCTGCTC 179
Query 241 CAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAGGGTTGAAGAAGG 299
|||||||| ||||| ||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 180 TAGTCTCAAGAATATCCTCGATACGGAACCGGA-ATGTCTATGCGAAGGGTTGAAGAACA 238
Query 300 CA-CCT-TTA-GGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCGTTGCTTGTA 356
| ||| ||| ||||||||||| ||||||||||| || |||||||||||| ||||||||
Sbjct 239 CTGCCTCTTACGGAATCAAACTTAACGTTACTAAGGCTACTACTCTTCCCGATGCTTGTA 298
Query 357 AACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTCCTCCTACTG 416
|| || |||||||||||||| ||||||||| | ||||| ||||||||||||||||| ||
Sbjct 299 AAGTTTATGCTCCTCCGGTGGCAGCTTGTGGTGCATTGTCTCCTGCTAGTCCTCCTGCTA 358
Query 417 CTAATGGGCAAG 428
|||||| |||||
Sbjct 359 CTAATGCGCAAG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5