BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09380.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325490 jgi|Araly1|325490|fgenesh1_pm.C_scaffold_6000710 1260 0.0
> Ahg325490 jgi|Araly1|325490|fgenesh1_pm.C_scaffold_6000710
Length=816
Score = 1260 bits (682), Expect = 0.0
Identities = 776/821 (95%), Gaps = 7/821 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAGAAACCACCAGTACGGAAGATGAAGTTTGCCCCAAAAGCTCCACCC-AAACG 59
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 1 ATGGAGCAGAAACCACCAGTACGAAAGATGAAATTTGCCCCAAAAGCTCC-CCCAAAACG 59
Query 60 TGTGCCAAAACCTGAAGTTAAACCTGAAGTGGTTGAGGATAATAGTAACAGTGCACAAGC 119
||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 60 TGTGCCAAAACCTGAAGTTAAACCTGAAGTGGTTGAGAATGATAGTAATAGTGCACAAGC 119
Query 120 ATCGGAATTGCTACGCAGAGTTAATGAAAGATCATTGCGCAAGCCAAAAGCGGACAAGAA 179
| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGGAATTGCTACGGAGAGTAAATGAAAGATCATTGCGCAAGCCAAAAGCGGACAAGAA 179
Query 180 AGTTCCTGCTTCTCAAGTTGCTTGGTTGGGGGGAGTGGTGAATTCAACCAGATCAAATAA 239
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 AGTTCCTGCTTCTCGAGTTGCTTGGATGGGGGGAGTGGTGAATTCAACCAGATCAAATAA 239
Query 240 GTACCTCAATAGATCAAATGGTGCTTATGGATCAACCTCTACTCAGGAGATAGAGTATAA 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTACCTCAGTGGATCAAATGGTGCTTATGGATCAACCTCTACTCAGGAGATAGAGTATAA 299
Query 300 AGAACCATGGGATTACTACAGCTATTACCCTATCACACTTCCAATGAGGAGACCGTATGC 359
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 AGAACCGTGGGATTACTACAGCTATTACCCGATCACACTTCCAATGAGGAGACCGTACGC 359
Query 360 AGGAGATCCAGAGGTTCTTGACGTGGAGGAGTTTATGCAGGCTGGAGGACATCATGAAGA 419
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 360 AGGCGATCCAGAGGTTCTTGACGTGGAGGAGTTTATGCAGGCTGCAGGAAATCATGAAGA 419
Query 420 TTCACTTAACACAGCCGCTAATCTCGGTCTAATGGAGGATAGTGGAGAACAGAAAATGTT 479
||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 420 TTCACTTAACACAGCTGCTAATCTTGGTCTAATGGAAGATAGTGGAGAACAGAAAATGCT 479
Query 480 TTTTATGAGGCTACCTTCTGTTCCTTTGGCATCAACACCAACAGAAAACCTTGAAACAAG 539
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TTTTATGAGGTTACCTTCTGTTCCTTTGGCATCAACACCAACAGAAAACCGTGAAACAAA 539
Query 540 GCCAAATATCAAAGGCCCCGTTGAGAAGAAGACTGTTGATTTAAAAGCCTTGCCAGAAGG 599
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GCCAAATATCAGAGGCCCCGTT---CAGAAGACTGTTGATTTAAAAGCCTTGCCAGAAGG 596
Query 600 TTACATGGGCAAACTGTTAGTCTACAAAAGTGGTGCTGTCAAGATGAAACTTGGG-GAAG 658
|| |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 597 TTTCATGGGCAAACTACTAGTCTACAAAAGTGGTGCTGTCAAGATGAAAC-TGGGTGAAG 655
Query 659 TGCTTTATGATGTAAGCCCAGGGTTGAAGAGCGAGTTTGCACAAGATGTGATGGTGGTTA 718
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 TGCTTTACGATGTAAGCCCGGGGTTGAAGAGCGAGTTTGCACAGGATGTGATGGTGGTTA 715
Query 719 ACACAGAGCAGAAGAACTGTTGTCTGGTTGGAGATGTGTACAAGCATGCAGTTTTGACTC 778
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACACAGAGCAGAAGAATTGCTGTCTGGTTGGAGATGTGTACAAGCATGCAGTTTTGACTC 775
Query 779 CTGATATTGATTCAATCTTGAAAGATATCGAAAATATATGA 819
||||||||||||||||||||||| ||||||||||||| |||
Sbjct 776 CTGATATTGATTCAATCTTGAAAAATATCGAAAATATTTGA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5