BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09390.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487751 jgi|Araly1|487751|fgenesh2_kg.6__885__AT5G09390.1 1740 0.0
> Ahg487751 jgi|Araly1|487751|fgenesh2_kg.6__885__AT5G09390.1
Length=1142
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1145 (94%), Gaps = 9/1145 (1%)
Strand=Plus/Plus
Query 7 CACCGCCTGGAAATAAACAAATCGTCGTTGTTCTCGTCT-A--ACGCTTG-TGCAATGGC 62
|||||||||||||| ||||||||||||||||||||||| | | || || | |||||||
Sbjct 1 CACCGCCTGGAAATCTACAAATCGTCGTTGTTCTCGTCTCATCAAGC-TGCTCCAATGGC 59
Query 63 AGATAGTTCGTCGAGGAGGAACCTTAAACGATCCTTCTTAGAAGATGAAGATTCCGATAA 122
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AGAGAGTTCGTCGAGGAAGAACCTTAAACGATCCTTCTTAGAAGATGAAGATTCCAATAA 119
Query 123 ACAACCTCCCGAAAAGCGAGTACGGTTTCCAAAGGGGAAGAAGTCGAAACCTGAACAGCT 182
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 120 GCAACCTCCCGAAAAGCGAGTACGGTTTCCAAAGGGTAAAAAGTCGAAAGGTGAACAGCT 179
Query 183 CTTAGAGGAAGAAGCTTTAGCCCGCCGCAAAGCCCGTGATGCTGCTAAGGAGCGTGCAAA 242
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CTTAGAGGAAGAAGCTGTAGCCCGCCGCAAAGCCCGTGATGCTGCTAAGGAGCGTGCACA 239
Query 243 GATTCGCAATCAGAATACTACTAAGCTCTTTATCGAAGATGACAGTGATGATATTAAT-C 301
||||| |||||||||||| |||| |||||||||||| | || | ||| |||||| || |
Sbjct 240 TATTCGAAATCAGAATACTGCTAATCTCTTTATCGAAAACGATAATGACGATATTGATGC 299
Query 302 AGGCTCAGGAGACTTATGAGGATGATGGCAATCGCACAGAAGATGGGATCCAGATTGAAG 361
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 300 -GGCTCAGGAGACTTATGAGGATGATGGGAATCGCACAGAAGATGGGATCCAAATTGAAG 358
Query 362 CTTTTAGTCTGGACAGAGAGAAAGAAGAAGGTTACTTTGATGCTGATGGGAACTTTGTAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTTAGTCTGGACAGAGAGAAAGAAGAAGGTTACTTTGATGCTGATGGGAACTTTGTAG 418
Query 422 AATATGTTAGAGAAAAGGAAGTCAAGGATGCATGGCTTGACAGTATTGaaaaaaaTCCAA 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 AATATGTTAGAGAAAAGGAAGTCAAGGATGCATGGCTTGACAGTATTGAAAAAAATCCGA 478
Query 482 TGTATATGGGACGATCTGCTGCAAATGATACTGAGATGGATGATGATAGTGGGAACGAAA 541
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 479 TGTATATGGGACGATCTGCTGCAAATGATACTGAGAAGGATGAAGATAGTGGGAACGAAA 538
Query 542 AAGCAGGGGATGACCTTTCTCAAGATGAAATCGGAGTTAGAAAGAGGCGCATTGCTAATG 601
||| || |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 539 AAGTAGCGGATGATCTTTCTCAAGATGAAATTGGAGTCAGAAAGAGGCGCATTGCTAATG 598
Query 602 TCCTTGAACCAGGAGAAACGGTCTTGCGAGCTTTAAGGAGGTTGAAAGGGAATTCGAATA 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCTTGAACCAGGAGAAACGGTCCTGCGAGCTTTAAGGAGGTTGAAAGGGAATTCGAATA 658
Query 662 ATCGCAAGGAGAAGATGACATCTGAGACCAAGCTTATCTTTGATCAGCTTACTGAGGATG 721
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 659 ATCGCAAGGAGAAGATGACATCTGAGACAAAGCTTATATTTGATCAGCTTACTGAGGATG 718
Query 722 CGGACAAGCTTATCGAGAACGGCGACTACAATGTTTATCATGAGGAGCAAGAAGTTTTCC 781
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 CGGACAAGCTTATCGAGAACGGTGACTACAATGTTTATCATGAGGAGCAAGAAGTTTTCC 778
Query 782 AACGTGAAGCAGAAGGATATGAGAGACTAGCTCAAGCGAAAGAAAATGGGACTGCCAATA 841
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 AACGTGAAGCAGAAGGATATGAGAGACTAGCTCAAGCGAAAGGAAATGGGACTGCCAAT- 837
Query 842 T-AGTATCTTGTGATATGTTTGGCGATGATGAGAATGCTCCTGAACCTTCCTCTGATCTA 900
| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 TCAGAATCTTGTGATATGTTTGGCGATGATGAGGATGCTCCTGAACCTTCCTCTGATCTA 897
Query 901 CAACCGTCTAGCTCCATCTCGGGCACTCAGCTTAATTCTGATTATGTGTTTGATGAATCT 960
| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 898 CTACCGTCTGGCTCTATCTCGGGCACTCAGCTCAATTCTGATTATGTGTTTGATGAGTCT 957
Query 961 TCAGGGTACTACTACAGCAGCAGCCTTGGTTACTATTATGACCCGAACACTGGACTTTAC 1020
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 958 TCAGGGTACTACTACAGCAGTAGCCTTGGTTACTATTATGACCCTAACACTGGACTTTAC 1017
Query 1021 TGCTACGCAACAACCGGAAAATGGTACAGGTACGATGAAGAGACTAAGGAATATAAAGAG 1080
|||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1018 TGCTCCGCAACAACCGGAAAATGGTACAAGTACGACGAAGAGACTAAGGAATATGAAGAG 1077
Query 1081 GTGGTTTCTGAAGTTGCTACTGAAGAAGTTTAATTTTCGTTTGTCTGTACTTTTGACTAA 1140
||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| || ||
Sbjct 1078 GTGGTTTCTGAAGTTGCTACTGAGGAAGTTTAAATTTCTTTTGTCTGTACTTTTAACCAA 1137
Query 1141 CACAG 1145
|||||
Sbjct 1138 CACAG 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5